Array 1 53526-57264 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788484.1 Corynebacterium sp. HMSC06C06 Scaffold260, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================================== ================== 53526 29 100.0 32 ............................. CCAGACGCCGCGCCAGCGCGGGTGATTGTGCC 53587 29 100.0 32 ............................. AGCCTGGAGAATATCACCGAGCGCGGGGAAAA 53648 29 100.0 32 ............................. CCCTGGCCTGATTCCGTAGCCGTATCGGGTGA 53709 29 100.0 32 ............................. ACCAGAACGGCATGAGCCTTGCAGCTGCGAAG 53770 29 100.0 32 ............................. CCGTCCCTGGTGGCGCACGATGTCGCCCTCGC 53831 29 100.0 32 ............................. CAGTGGCGAAAGCGTTCCACATGTGGCCGTAC 53892 29 100.0 32 ............................. GCCTACCGAGGCAGCCGGGATGAGCTACGTGC 53953 29 100.0 32 ............................. GAATATCATGGAGCCCATGACCAACGAAACTC 54014 29 100.0 32 ............................. GCCGGTCGCGCCCGAATCAAAGAGGTTGGTGA 54075 29 100.0 32 ............................. CCCAGTGAGGGCACAACAGTGGCGCAGCAAGT 54136 29 100.0 32 ............................. CAGTGGCGAAAGCGTTCCACATGTGGCCGTAC 54197 29 100.0 32 ............................. GCCCTGTTCGCATGCTTCGAGAGCTGCTTGCT 54258 29 100.0 32 ............................. TTCTCGGATGTCAGTACCAAGGTCAAGTGCTT 54319 29 100.0 32 ............................. ATCACGACGAGGGCGATTGCCAGGATGAGTGT 54380 29 100.0 32 ............................. ACGTGCCGTTACGCCGTGCGCAATTTTGTGAG 54441 29 100.0 83 ............................. AACATNNNNNNNNNNNNNNNNNNNNCGCCCCGCGTAAGCGGGGATGAGCCCAACATCATTGCCGACCTTCGCTGCATTCCGCG 54553 29 96.6 32 ............................G TGTCTGGACTGCATGGGAGGCTTGGATAACTG 54614 29 100.0 32 ............................. TGCCTTCACAAAATCGGATTGCTCTCGTGGCA 54675 29 100.0 32 ............................. ATGGCACGCGAACAGCTCGCCACCATCGCCCC 54736 29 100.0 32 ............................. GCGTCGAGCGACCATGCACCCGCGCGGAGTAC 54797 29 100.0 32 ............................. AATCACCACAATCCTCGAAGGACAGCAATGAC 54858 29 100.0 32 ............................. GTACCGATGGCCCGGTATCGCCGTACCATCGA 54919 29 100.0 32 ............................. CACACCGGGGCCTATCGGTAAGACTGGCCCGG 54980 29 96.6 32 ............................G ACGTCGTGCGCTACCTCATCCAGGGTTGTGTA 55041 29 100.0 32 ............................. ATCAAGAAAGAGAAAGAGGAAGAAGATGAATA 55102 29 96.6 32 ............................G GTGTCTAGGTAGCGGTTGACCATTAGCCCGTA 55163 29 96.6 32 ............................G CAAGCTCACACTATCAAGTCGAAGACAATGGC 55224 29 100.0 32 ............................. ACCTGATTAGCGGGGTAGGGGATTGTTACCCC 55285 29 100.0 32 ............................. ACGGCGATGAACCTCTTCAAGTCCATCTTTGA 55346 29 100.0 32 ............................. AGCGAGCAAGACACCGCCCCCGCCGCCGACTC 55407 29 100.0 32 ............................. CGCCGCATCCTTTTGCGCCGACTCCGAATAAG 55468 29 96.6 32 ............................G TAGATGGACATATCTCCCCTGGCTGGTTAGGA 55529 29 96.6 32 ............................G TAATCCAGCGCCGCACCCAACCAGACGCGGAT 55590 29 96.6 32 ............................T ACGGCTAGGTGGCGGGTGCAGGATGAGCTTGA 55651 29 100.0 32 ............................. TACCGTCCGCTGCCATGCTGTGCTGGTAATCA 55712 29 100.0 32 ............................. CGCAATGACCAACCTTGAAAACCTCGCCTACA 55773 29 96.6 32 ............................G GATGGGCGTGGTCGCGTCCGTAAAAAGAAGGA 55834 29 96.6 32 ............................G CCTTAGCCGCCTTCTGTGCCTCAACCACAGCC 55895 29 96.6 32 ............................G GATTCGGGTTTGGTTGGCGAGTTCGTCTGTGA 55956 29 100.0 32 ............................. ATCCAAGCCAATCGTGGACGGCCTAGTGGACG 56017 29 100.0 32 ............................. GCATCATCTCCAGATCGACGCCGGGGAACCAC 56078 29 100.0 32 ............................. CGGTTGCGCTCCTTTTTCATCCTTTTTTTGAA 56139 29 100.0 32 ............................. ACTACCGGATCTGCCATCACCCTAGGCAAGGA 56200 29 100.0 32 ............................. GCGGCGCGGCCTGCCAGTGAGAAGTGATAGCC 56261 29 100.0 32 ............................. ATGATGTGCGTGCGGCTGTCGATATTCGCGAT 56322 29 100.0 32 ............................. CAGACAAACGAGCTGATTAACAAGAGGCTGCA 56383 29 100.0 32 ............................. TGTAGGGCGCGCAGCGCGTCCTCAAGGTGCTT 56444 29 100.0 32 ............................. CGACGAGGCGCGACACCGGAATCTCAACAGAC 56505 29 100.0 32 ............................. GGCGCTGAGGTTATCGACATCACGGAGAATCT 56566 29 100.0 32 ............................. CGGGGTGGCATATAATGGGGTTGTAAGCAAGA 56627 29 100.0 32 ............................. GCAGAGCGGCTTGTTTATCCAGTCTTTGCAGA 56688 29 100.0 31 ............................. CCCGCAGAATTGCAAGACCTCGGGGCGGCAG 56748 29 100.0 32 ............................. GCTAAGTGGATTGAACTCAACGAGGAGGAAGC 56809 29 100.0 32 ............................. CGGCGTGCCGCCCACGTCGGAGTGGTCGCGGT 56870 29 100.0 32 ............................. TATCGATGCGATGAGAGTGCGCAGCGTCGCGC 56931 29 100.0 32 ............................. CTCGAAAACGTCGCCGCCACCATCGTCGGAAA 56992 29 100.0 32 ............................. TGCATCCCTGTCCAGATGCCCTGTAGCGCACC 57053 29 100.0 32 ............................. TGGACGAGGTACGGGGCCTCCCATGTCTGCCA 57114 29 100.0 32 ............................. CTTTCCAGCTGTTGTTCCCGGGACCTTTGGTG 57175 29 96.6 32 ............................T AAAGCGCTGGAGATTCAGGCGGAGATGAATGC 57236 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================================================================== ================== 61 29 99.4 33 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : GTGGACAATAGCGCCGAGTCAATCGATGTAGAGCTGCTTTTGTGGAACGAACTTGAAAATATTGCGGCTGGTACTAATTGGTCAGACTTTGATCGGAGTTCTCCATGATGGTGCTCGTCGTTACTGCATGTCCCGCCGGCCTGCGCGGTGACCTTACTAAGTGGTTACTTGAGATTTCACCTGGGGTGTTTGTGGGTCGTCCATCAGGGCGCATTCGTGATCTGTTGTGGGAACGTTGCGTAAGTTTGTGCAAAGATGGCCGCGCTATTTTGGTTTTTAGCTCCGATAATGAGCAGGGGTTGGATTTTCGCGTTCATCGCCATGAGTGGGAGCCTGTGGATTTTGATGGTGTCACCCTCATGCGAAGAACCACTGCGCCATCAAAAGCTCAACGCCGTACCGGCTGGAGTGCTGCCCGAAATGCTCGCCGACACTGACCGTTACACCATAAGTCGGATCTGCTAGCCTCGTTTTTGGCTCTTCCACGCTGGTCAGTAAGT # Right flank : CGGCA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-1795 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV788516.1 Corynebacterium sp. HMSC06C06 Scaffold83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. TGGGCAGCACCACGGGTACCGAAAATTCCCGC 68 29 100.0 32 ............................. TCGGGTTGACACTGCAACCAGGGTGACATATA 129 29 100.0 32 ............................. TAGCGATAAAGTCAGTAGCACCGGCGGTTAGC 190 29 100.0 32 ............................. TCGGGTTGACACTGCAACCAGGGTGACATATA 251 29 100.0 32 ............................. CGCCCCAACATCCTCGACCCGGAAAACCAGTA 312 29 96.6 32 ............................G CTCTACCGGGCACTAGCCCCGCACCTGATTAA 373 29 100.0 32 ............................. CCCGTACAGTGGGCACGCCTAGCATCTGAGCT 434 29 100.0 32 ............................. ATTGGCGGACAAGCCAAATTCCTAGCGGATGG 495 29 100.0 32 ............................. GCGGCACCGACACCGCCCACGGCGGCACCCAA 556 29 100.0 32 ............................. CGGCAAACTCGCGGGCGGCTGGAACTTCATCA 617 29 96.6 32 ............................T GGAAGGCAATGCTCGACGCGGTGACAGCCGTG 678 29 100.0 32 ............................. ACCGCGGGAAGTTCACCCTCTTGCTGATTGCT 739 29 100.0 32 ............................. GGTTGAGGTCAATCTGAAACGCGAGAACATCC 800 29 100.0 32 ............................. GACTTGGGTGCAGACCCACGCCACGGCATCAG 861 29 100.0 32 ............................. AACTCATCCTTACCCACACCCTGCGCACGCCG 922 29 100.0 32 ............................. GCACCATCAAACCAAGTATTGTGCCCCGGCGC 983 29 100.0 32 ............................. ATACACCGCCCTAGTTGACTTCCTTAGAAATC 1044 29 100.0 32 ............................. GCGGAACAGCCGCCACATAGTACCCATCAGGA 1105 29 100.0 32 ............................. CACGTCCGATGACCCGGGGAATGCATCGGGTT 1166 29 100.0 23 ............................. CNNNNNNNNNNNNNNNNNNNNGA Deletion [1218] 1218 29 100.0 32 ............................. ACCGGCAGGCCCATCACCCTCAGCCCTGATGA 1279 29 100.0 32 ............................. CTTACTCTCTTCTTTACCCCTGGTGGGGTACT 1340 29 96.6 32 ....................T........ CGAGTCGATATAGCCGACGAAATACGTCTCAC 1401 29 100.0 32 ............................. TGATTGCCACCCCACCGCTTGCCGGTTTCTTT 1462 29 96.6 32 ..........................T.. GCCAGCTCCATCTGGTTAAGTTTGTCCAGTTC 1523 29 100.0 32 ............................. CGTGATTCTATTTACCGTAACGTGTTTGAACC 1584 29 96.6 32 ............................T AGGGTGCGCTGCAAATAATCCCGGTCGTGGAA 1645 29 96.6 32 ..................A.......... AGTGGGGTGGACTCACACACCACTGGTATCGC 1706 29 100.0 32 ............................. GACTGGCGGGACAACAACAGCCCATCGGAGAC 1767 29 89.7 0 ................T.....A....G. | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.0 32 GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Left flank : TCATCAG # Right flank : CTTCCATTCTGCTGTGGAAGGTACAGAAAGAAAGTCTGACCTGTGAAACGTGGGGATAAGATTTTTCTGTTAAGAAATACCCGTTTGCCCCACAGTTTTCCGCGGATTTGGAAGAGTGTTTTCTGCGGAACGTAGTTTTCAAAATCGGACCACACGGTCCCTACATCCTCATCACAAGATACGAGCAATCCCCATTTATGTTTTCGCAGAGGAAGCGGATGACCTGGACGTACTCGAGTCTGTTGGAAGAAATGCAACATGGTGCTGGAGTGAAACCCTATACAGCGTCGAAGCGACGTTGGTTATCTTCGCATACATTGATGACGTCCATGTTGCTACTGGGCCAGTGGAAGATCATTGCTCTAGATCTTGAATTGAGTCACCGAGCGCTGTGCGAGGCGGGGTTGTGAGGATTAGCGGTCGGATGCTCAGTGTGGTTTTAGTAAATGTATTTATCTGCCTTGAAAGTTTGAGCCGTCCCAACTTTTAACCGCCAGGGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCGTAAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTAAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //