Array 1 1127-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWH01000622.1 Salmonella enterica subsp. enterica serovar Hiduddify strain BCW_2882 NODE_622_length_1155_cov_0.882022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1126 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 1065 29 96.6 32 A............................ GGGTTTACTAGTATGAATACCCTGAATTTAAA 1004 29 100.0 32 ............................. CTTTGGTTTTTTCTCTTACTTCATGAACAGGA 943 29 100.0 32 ............................. GTGCACGTTAGCCGCGTAGCTGAATTAGGTTG 882 29 100.0 32 ............................. AGGCACGAAAAGCCATGGCCGCCGCAAAATCC 821 29 100.0 32 ............................. GGCGAGCAGATAAACACCGAAAACCTGCACGC 760 29 100.0 32 ............................. GATTTATCAAATGAAACTCTTCCACGGCAGCA 699 29 100.0 32 ............................. CCCATCAAGATAAACATCATAGCGAGCACCTG 638 29 100.0 32 ............................. CCATTAAGGCACTACTGGCTAAAAATGATGCC 577 29 100.0 32 ............................. TCTCTGTGATTACCCCGGAGCATGGCGGTGCG 516 29 100.0 32 ............................. TGGCCGGGGAAACAAGGAAAGTCCTGGTTTTT 455 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 394 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 333 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 271 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 209 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 148 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 87 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 26 26 89.7 0 ..........................--- | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCGATCTAACCGGCAACGTTTAGCGCCA # Right flank : A # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1139-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWH01000617.1 Salmonella enterica subsp. enterica serovar Hiduddify strain BCW_2882 NODE_617_length_1169_cov_1.02957, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1138 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 1077 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 1016 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 955 29 100.0 32 ............................. CAGTACGACTGGACGGGATTTGATTCATTAAC 894 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 833 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 772 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 711 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 650 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 589 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 528 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 467 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 406 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 345 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 284 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 223 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 162 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 101 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 40 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTTTGTAGCCGAAAACCGGCTGGCGCTGA # Right flank : GGACGAGTTCTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 463-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWH01000708.1 Salmonella enterica subsp. enterica serovar Hiduddify strain BCW_2882 NODE_708_length_488_cov_0.825436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 462 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 401 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 340 29 100.0 32 ............................. AGACACAACTATGGGACTGATAAATAATTCAT 279 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 218 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 157 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 96 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 35 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AATCAACTTGCAACATTTCAGTTGG # Right flank : GATCGGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55-450 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWH01000163.1 Salmonella enterica subsp. enterica serovar Hiduddify strain BCW_2882 NODE_163_length_9171_cov_1.1605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 116 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 177 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 238 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 299 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 360 29 100.0 32 ............................. AAGACAACTCCTGTCTTTCCATCACTCGAAGC 421 29 100.0 0 ............................. | A [448] ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCTCGCCAGCGGGGATAAACCGGAGACGCCAGATGAATTCTGCGGGACAAGAGAG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 42-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXWH01000759.1 Salmonella enterica subsp. enterica serovar Hiduddify strain BCW_2882 NODE_759_length_264_cov_0.841808, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 103 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 164 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 225 29 89.7 0 ......................C.CT... | A [247] ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GATAAACCGTTGTTACAACAGCCGATATAGTCGCAGTTATGG # Right flank : TGAAATACTG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-11.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //