Array 1 76709-78095 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKOA010000020.1 Bifidobacterium catenulatum isolate Bifidobacterium_catenulatum_MC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================= ================== 76709 33 100.0 34 ................................. TCGTATATACCGTAGCCATTTTATGTTAATCCTT 76776 33 84.8 39 ............................NNNNN NNNNNATACCGCGACACGCTCACCGTATTGGGGTATGTG 76848 33 100.0 33 ................................. GCTGGTAAGCACGGTGCATTTACCCGTGTCCAG 76914 33 81.8 37 ...........................NNNNNN NNNNGGGCGGTCAATTTGTTGGTTTCGGACGTGGCGA 76984 33 100.0 35 ................................. TTCTTGATTCTATTGCTCAAATGATGCTGACACGC 77052 33 100.0 35 ................................. ATCCAGACGTGCGACTATATCAACGCCAACACCAC 77120 33 100.0 33 ................................. ATACTGTCCGACCTGTTTTTCAAGATCATCCAA 77186 33 100.0 34 ................................. CACCAGCCTGAATCGCCGCGATTATCGCCGTCGC 77253 33 81.8 34 ...........................NNNNNN NNNNCTCCGTCCTCGACTCTCGAACGGCGGGATG 77320 33 100.0 35 ................................. AGGACGTTGGCTTTCATGGAATCGGTGAAGCCCGG 77388 33 78.8 36 ..........................NNNNNNN NNNCGATGATACCGCAAGAAATGCATGGTTTGACAA 77457 33 100.0 36 ................................. TCCACTGTTCTGACGATTTGCAGCCTGTCGCATCGG 77526 33 81.8 36 ...........................NNNNNN NNNNCAACGTGCCCGGCCGACTGCGCGGACTCGGCC 77595 33 100.0 33 ................................. GTCGCCACCGCAAACATGATGCACCTCGGTAAC 77661 33 100.0 34 ................................. ACTAGCGTATCCGAAATCATCGATAGTCAAATCA 77728 33 100.0 35 ................................. CAGTCAACGGGCGTGGATCCGTTTAGGAGACACGG 77796 33 100.0 34 ................................. TACGGCGGATCCCTCAGCGAGCCAGGCCCATACG 77863 33 100.0 34 ................................. CATGGAACGTGGTGGACCGGATCCTCGAAGAGTC 77930 33 81.8 34 ...........................NNNNNN NNNNATTGTATGCGTCGGCGCGGTGCGCGTCAAT 77997 33 100.0 33 ................................. CAGACCTGAAACCCGGCGACATCATCGAACCGG 78063 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================= ================== 21 33 94.8 35 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CCAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAACACAGGTAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGTGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAATGGTGTTTGTGCGAAGTGGAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTGAAAACTAAATAATGGACATTAAAATGAGATAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : GCCATCTGGCAGGCTTGTCGGTCTGGCGTGGCGGGTCGCTCTCCTCATGGAGAGCGTGGATNNNNNNNNNNGGCGTGTGTCATACGGGTAAGCGTAGTCGGGGTCGCTCTTCTCATGGAGAGCGTGGATTGAAATACGACGGCCATGATGCCGGTCCACAATGATTGCAGTCGCTCTCCTCATGGAGAGCGTGGATTNNNNNNNNNNATCTTGTCGACGCTGTTCGACGGATCGTCGTCGCTCTCCTCATGGAGAGCGTGGATNNNNNNNNNNAGATGGTGGGCGACGAAGCGGAAGTGCGCGAAGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATTACCGAGTCGATAGCCGGTGGTGAGTCGCCTTGGTCGCTCTCCTCATGGAGAGCGTGGAT # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 78198-78494 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKOA010000020.1 Bifidobacterium catenulatum isolate Bifidobacterium_catenulatum_MC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 78198 33 81.8 34 ........T...................GAAAT ACGACGGCCATGATGCCGGTCCACAATGATTGCA 78265 33 100.0 34 ................................. NNNNNATCTTGTCGACGCTGTTCGACGGATCGTC 78332 33 97.0 37 ...........................N..... NNNNAGATGGTGGGCGACGAAGCGGAAGTGCGCGAAG 78402 33 84.8 33 ............................GAAAT TACCGAGTCGATAGCCGGTGGTGAGTCGCCTTG 78468 27 81.8 0 ...........................------ | ========== ====== ====== ====== ================================= ===================================== ================== 5 33 89.1 35 GTCGCTCTCCTCATGGAGAGCGTGGATTNNNNN # Left flank : GCGTATCCGAAATCATCGATAGTCAAATCAGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATCAGTCAACGGGCGTGGATCCGTTTAGGAGACACGGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATTACGGCGGATCCCTCAGCGAGCCAGGCCCATACGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATCATGGAACGTGGTGGACCGGATCCTCGAAGAGTCGTCGCTCTCCTCATGGAGAGCGTGGATNNNNNNNNNNATTGTATGCGTCGGCGCGGTGCGCGTCAATGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATCAGACCTGAAACCCGGCGACATCATCGAACCGGGTCGCTCTCCTCATGGAGAGCGTGGATTGAAATGCCATCTGGCAGGCTTGTCGGTCTGGCGTGGCGGGTCGCTCTCCTCATGGAGAGCGTGGATNNNNNNNNNNGGCGTGTGTCATACGGGTAAGCGTAGTCGGG # Right flank : | # Questionable array : NO Score: 5.43 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTNNNNN # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 190-825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKOA010000021.1 Bifidobacterium catenulatum isolate Bifidobacterium_catenulatum_MC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 190 33 100.0 34 ................................. CCGAAAATTCGAATACAGTCATCGCTATGGACAG 257 33 81.8 34 ...........................NNNNNN NNNNCAGGTCACGGCGTCGCCGTAGAACCAGTTG 324 33 100.0 33 ................................. TCGTGAAGCAGCGCATTATCACTATCCCCTCAC 390 33 100.0 33 ................................. GCCTACAATATCGGTTAATCCCTCCACTCCCTG 456 33 84.8 35 ............................NNNNN NNNNNGAAAGAAAGCCGGTAAGAAAGAAAACGAAT 524 33 100.0 33 ................................. TCGCACGTGTCCTAGGTGCGGGCTGGCGCTTGA 590 33 100.0 35 ................................. GTATGAGATAATGGCGTTTTCGCGTGCTTGCGCGA 658 33 100.0 35 ................................. CAATCCGGTGTGACAATCAGCAATGTCACCGTGGA 726 33 100.0 34 ................................. CAAAGTCGTGTCAATGGTGCGCATGGAGCCGTTA 793 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 96.7 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNTGAAAAGCCGCACGGACATGCAAGACTTACGTGTCGCTCTCCTCATGGAGAGCGTGGATNNNNNNNNNNTGACGATCGTGTCGATGATGACGTCCACGAGGTGTCGCTCTCCTCATGGAGAGCGTGGATTNNNNNNNNNNATCTTGCTAACGGTTTGATTGGCGTCATGGTGCGTG # Right flank : TCGGTGTCTGCATCGTTCCGGCCACCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCGCATGTGCGGGACTGCTAGCAACGGAAAACTAGGGTTTTTGTCCGCTCGGGGCGGCTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAACTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTCTGTTTTACTTTGGTCGCTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCGTATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCGAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGACGGGGCGGCCGGTGGGTGATCTGCATACGGTTGGTGACGGGG # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 334016-334192 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAKOA010000003.1 Bifidobacterium catenulatum isolate Bifidobacterium_catenulatum_MC1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================== ================== 334016 24 100.0 27 ........................ TATTCAGCCCAAAAACAACCCCATAGT 334067 24 100.0 27 ........................ AACAGAATCCAAAAACAGCAGCCCAAC 334118 24 87.5 27 ..........AC.....T...... TCCAAACACCCAAAACCAGCCCATGAG 334169 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================== ================== 4 24 96.9 30 TGTCCGATTCTGCAGAAACGGACA # Left flank : GCGCCCGACCGATTTTCGAAGCGCTCAAGCCTGAGGGCGATTCCGGACTGGCGCTCGCAGGCCCGGTCGGCGGCGGCCATTTCGCCAAAATGGTGCACAACGGCATTGAATACGGCATGATGCAGGCGTTCGGCGAAGGCTTCGCCACTATGGTGAAGTCCGACCTCATCAAGGATCCCGCTGCCGTGATGACTTCATGGCGAGACGGTTCCGTGGTACAGTCCTGGCTGCTGGATCTGCTGGCGATCGCATTCAAGTCCGATCCGACGCTGGAATCCATGCCGCCGGTGGCCAACGAGTCCGGCGAGGCGAAGTGGATGATCGAGGCGGCGCTCGAACTGGGCGTGCCGACCCCCGCCACCGCGGCCGCACTTTACGCGCGGCAGACTTCCCGCGGCGGCGCGGATGACATTCTGCGCGTTGTTTCCACCATGCGCGCCCAGTTCGGCGGCCACGTCACCAAGATCGACGAAGTCGCCACCCACTGAGAGTGCTTTGAA # Right flank : ACTCCACACAGCTTAAGAACGCCTATTTCGCTTATACATGGCAGACGCTCTCGGCGAAACAGCACTTCGAGGGTACGATTTGGAGGTTTTAGCCAACCGAACTGCCATATATAAGCGAGATAGCTCCGAACAGGGGCGTGTATCTGCCATATATAAGGCAGACACACGCCCCTTAGCATATTTGTGTCCGGATTGCTCCAGTCAGAGGTTCCAGTCAGGAACTCAGCGGCCGTAGACTTCGTGCACAAACTTTTCGAGCGCGGCGATGGAACGTTCCACCTTCTCCGTGTCGATGCAGTACGCCATGCGGAAATAGCCGGGCACGCCAAAGCTGTCGGACGGAACGAGAATCAGGTCGTAGTCCTTGGCTTTCATGCAGAACGCGTTCGCATCCTCCTCAAGCGCCTTCGGGAAAATGTAGAACGTACCGCCCGGTCGTACTACGTCGAATCCGAGGCGTACCAGCGCGTCGTACAAGAGGTTCATGTTCTTTTCGTACA # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.15, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCCGATTCTGCAGAAACGGACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //