Array 1 88424-89306 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPC01000009.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-119-15 119_15_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88424 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 88486 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 88547 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 88608 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 88669 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 88730 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 88791 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 88852 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 88913 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 88974 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 89035 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 89096 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 89157 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 89218 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 89279 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 105589-107486 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAPC01000009.1 Salmonella enterica subsp. enterica serovar Infantis strain UZH-SAL-119-15 119_15_contig_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 105589 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 105650 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 105711 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 105772 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 105834 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 105895 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 105956 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 106017 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 106078 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 106139 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 106200 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 106261 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 106322 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 106383 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 106444 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 106505 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 106566 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 106627 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 106688 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 106749 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 106807 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 106868 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 106929 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 106990 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 107051 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 107112 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 107173 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 107234 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 107335 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 107396 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107457 29 93.1 0 A...........T................ | A [107483] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //