Array 1 48639-49006 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CAAHXT010000002.1 Streptococcus pyogenes strain 33126V3S1, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     48639	    36	 100.0	    29	....................................	ACCAAATAGCTTGGGAGAGTAAGGAGGAG 	
     48704	    36	 100.0	    30	....................................	AGCACTATTATTTCTTACGATTGCAATATT	
     48770	    36	 100.0	    30	....................................	ATTTGGTTTTACTGGAATAACACTTATTGA	
     48836	    36	 100.0	    30	....................................	ATCGGCTGATATCGCTAAGGTTGTCATTGA	
     48902	    36	 100.0	    30	....................................	TTTGAGGTCATCAAAGCTTTGTTTAATAGA	
     48968	    36	  94.4	     0	.........................G......C...	|                             	T,TT [48997,49001]
==========	======	======	======	====================================	==============================	==================
         6	    36	  99.1	    30	GTTTTAGAGCTATGCTGTTTTGAATAGTCCCAAAAC	                              	       

# Left flank :   AATTTAATGAGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTACAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGGTACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGACTATTTCTTAATAACTAAAAATATGGTATAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG
# Right flank :  CATTGCCGATGATAACTTGAGAAAGAAGGTTCATACCAGCAGTCGGATACCTTTCTATTCTTTCTTTTAAAGCGTTTTCATGTTATAATAGGTAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGAGGGTTAGTTGGAGAGATTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGTGACACTTCTTGGGGACTAAGGTGGTTTTGTCTTTTTGAACCATGCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTAATGATGATGGAGGTGTTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGAT

# Questionable array : NO	 Score: 6.21
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGAGCTATGCTGTTTTGAATAGTCCCAAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:64.86%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 98% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-2.20,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.91,0.37   Confidence: HIGH] 

# Array family : II-A/B/C [Matched known repeat from this family],   
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