Array 1 635434-637263 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNEG01000001.1 Vibrio parahaemolyticus strain F7_10 F7_10_contig001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 635434 28 100.0 32 ............................ CTCGCGGTAAAGGCTGGGGTGTCGATGTTAAG 635494 28 100.0 32 ............................ GTAAATGCTGACGTTGGCATTACGTACCGCAT 635554 28 100.0 32 ............................ ATTACCTACGACTTGCTCAATGACTAATGTGT 635614 28 100.0 32 ............................ CGTAAGCCCACTGTTTACTGCCAACGTTCAAA 635674 28 100.0 32 ............................ CGCATATATGAATGCAGATGGTGAGGTAGTTT 635734 28 100.0 32 ............................ TCCCTAGCTTCGCTGACAGAGCGAATGTTAGC 635794 28 100.0 32 ............................ TAAAGTGGGGTAACGATGCTGGAATGCGAGAA 635854 28 100.0 32 ............................ TCAACGCGGAAGAACTAAAGCGATACAAAACC 635914 28 100.0 33 ............................ AAATTAAATTATAAGCACGTAAAGGTAGCTCAC 635975 28 100.0 32 ............................ TACTAATAACGCCAGTCGTTCTCAATTCAAAC 636035 28 100.0 32 ............................ TTATCGTTTACTCTGGGATAACTGGGAACGTT 636095 28 100.0 32 ............................ TAGTGTAGCCTTAGCCTCGGCTATCTTCTTAG 636155 28 100.0 32 ............................ GTCGCGTAAAATCAGCGGCAAATGGCGTTGCA 636215 28 100.0 32 ............................ TTTCTGTAGGCCATTAGCTTTTCGTCAATGGT 636275 28 100.0 32 ............................ TTCCGTTAAGCGACAAAACTGTGCCAGACAAG 636335 28 100.0 32 ............................ AGTAACAACAAAAATTACTCTGCGTACAAAGC 636395 28 100.0 32 ............................ GTGGCGCTTCAATCAATATCCTTGTTTGATAA 636455 28 100.0 32 ............................ ATTTCCTCATCGGCCTTGCAATATTTGCATTG 636515 28 100.0 32 ............................ AACTAGCGCGCTAACGCTTACTCAAATCAAAA 636575 28 100.0 32 ............................ TCAAAAAGGTGAGCCCGTGTCGTTGTCACTGT 636635 28 100.0 32 ............................ ATTCTCGCCAACTACCCAAACATTGACGAAAT 636695 28 100.0 32 ............................ AAAAGCCCGACGCGCCTAGCTGGATAAAAGTC 636755 28 100.0 32 ............................ CCGGAGCTCCGCCAGCTTTGCCCTCGTTACCC 636815 28 100.0 32 ............................ GCAACAAAATAGACTTTATGATCGCTTGATGG 636875 28 100.0 32 ............................ TTATCGTTTGTTATGGAGTAATTGGGAACGTT 636935 28 100.0 32 ............................ ATCACTCAAGCTCTAAGGGGAAACAGTTAGCG 636995 28 100.0 32 ............................ AACCGCGCGCGCCTTTGATTTCTTTAATCATT 637055 28 100.0 32 ............................ CTAAGCGATGTGTTTCCTCGATTACACATCGC 637115 28 100.0 32 ............................ ATGCGCATTTTAAACCTAGCGCTATCAAAGGT 637175 28 100.0 33 ............................ CAAAGAGTTCATTATCTTGCGCAGTGTCACCTG 637236 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 31 28 100.0 32 GTTAACTGCCACACAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTTAAATCACCTGAGAGAATTGAACGCGATATGCAGAAAAAAGCTGAGCTTTGGGCGGCTGAATCTGGCAGGTCTCTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTTCATTACCGTTTATCTATTTACATAGTCAACAGACCAAACAACGTTCATCCGATAAGAGCAGTAGATTCCCGTTGTTTATTGAGATGAATGACATCGGAATTAAGCAAGAAGGGCAGTTTGATTGTTATGGACTGAATGCCAAACTTAATCAACAAGGCAGTCTGGGAACTGTCCCACAATTTTAACCAACAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGTTATAAAATACATAGAGTTACAATAGATAGAATTTGGCAAGGTAAAAACATGATTTTTATCCTAACTATCTGTTGTAACTTTCTTTTATTGATTTATTCTATG # Right flank : AGATCACAGTTTCATCAGCGAGTAGAAGAGCAGCAATTGGAGCTGGATTAAACAAAGGTCCCTTTTAAAGAGCTCACACAAATTCACCTTCTTTAGAAGGTGGTTATATACATAATACATGAGTCTGAATTTATGGTAAGTTTAACTCGCTTAGATCTGTTACAAATAGTAAAGTGTTAATTACTCGTAATGTTGACTCGTCTGGTTTCATAGCATAAGCGCGTTTGTATGATGTTGCGGCTAAGTAGGTTTTGCCCTCAACTTCAGCGATTTTGCCAGCGATGATGTTACTGAACCAAGACTCTCGTATGTTTACAGCTTTTGCTAATAGAGTTTTAGTGTTGCTCAAGTCATCTCTATCGAAGGAACAGACCGCAAGAGCTTCGTAATATATAGGAGCATGGAGCTCATCTCTTATACTCAACAAACTATCATACATCTCCTTTAGCTCGTTGTCTGGAATTGCGAACGGCTGGATTGAGTTAAGAATTTTAGCGGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCACACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCACACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //