Array 1 949-187 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHQZ010000001.1 Streptococcus agalactiae strain SU187 scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 948 36 100.0 30 .................................... ACTTCCATGTTTCAAAATTTTTGGAGGCCA 882 36 100.0 30 .................................... AAATAAACTAACCTTTAAATTGCAAAACGA 816 36 100.0 30 .................................... AATTGACTTAAAAGGTCGCTCGTGTGTAGC 750 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 684 36 100.0 30 .................................... TAATCCTGAAAAAATAAGTGGAATGTCTCT 618 36 100.0 30 .................................... AGTAACTATTAATGATGAGCCTTACTTTGT 552 36 100.0 30 .................................... TTTCCCGCTGTCATGGCATAAAAACAGCGT 486 36 100.0 30 .................................... TCGAACTCTTGCTTAATAAGCCCGTCACGC 420 36 100.0 30 .................................... TCTATGGTTAACCAATTAGTCATCACTTAG 354 36 100.0 30 .................................... TGCTGGAAACAGGGTTTATAACAAAGTACG 288 36 100.0 30 .................................... TTATCAAATTCTTGTGAAACAAATTGATAA 222 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CTTATCAAATTCTTGTGAAACAAATTGATAAGTTTTAGAGTAAGTGTCTAGAGTTTCGGGAAAAACAAAATGAAATATCCTTATAGCTTAAGAGAACGAGAAAATCGTTCTCTTTTTTCGTTGGTCAAAACTAGTGAAAGGATATACGGCAATGTCAGATAATATTGAAATCATCATGGATATTGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 150-712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHQZ010000022.1 Streptococcus agalactiae strain SU187 scaffold_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 150 36 100.0 30 .................................... ATCACAATACAAGGTCTTTTTATCTTGTCT 216 36 100.0 29 .................................... AAAGTTTTTGAGTTTAAGACAATAGCTTC 281 36 100.0 30 .................................... TTTAGGTCGTTGGCGTTTGTTATTGATTAA 347 36 100.0 30 .................................... TGGTTGATTTGTATTAGAACCTGGGGTCGT 413 36 100.0 30 .................................... ACCAGCAGTTGAACAAACAGCGCCAGCAGT 479 36 100.0 30 .................................... AAATGATTATCTATCACATAAGGTTATTAA 545 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 611 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 677 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCAAACAGTATTGTATCATGTCGTAAACAATATCGTCAAGACTGAAGCAGAGAAAACCTTTGTTTCAGTCTTTTTTGGAATAAAAGAACCTAGAGTTTTCTTAGGTTATAAGGGTTAGTTGGACTTTCCCAGAAATATAGACACATACAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //