Array 1 2019262-2019491 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020889.1 Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2019262 31 100.0 37 ............................... AAATGCTTTCGACGCGCATAAAGCGCTGGCGCAGGAG 2019330 31 100.0 35 ............................... CTGTTCAAGCTCCGCCGCCTGATCCGCTTGCCGAG 2019396 31 100.0 34 ............................... CTCGGGTTTCGGGATGTGCTTCAGATCTGCGTCG 2019461 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 4 31 100.0 36 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : TGACGCGGCTCAAGTCCCATGATGATTCTTGTAAGCTAGGACGTCAGCACCAGCTCTCCCGGGGGCCAGAAGCGCCTGCGCAAGGTCGCCAAAGCCTGCCGGGACCGTGGCCAGCGCGTGCAGTTCTCGGTCTTCGAGATCGAAGTCGAGCCTGCCCAATGGACTGAATTACGGCAGCAGCTATGCGACCTGATCGACCCGGCCCTGGACAGCCTACGGTTCTATCACCTTGGCGCGAAATGGGAGACCCGCGTGGAGCACATCGGCGCCAAGCCCAGCCTGAACCTCAAAGGCCCACTGATTTTTTGACGCGAACCCCAAGCGCCCCATAAAAACCGGGCAGGTTCGCAGTCTCCTCAAGCAACTGATTTGCAAAAAAAAAAATAAATACATAGCGGATTCACGGGGTCCGCATGACGACTTCTCGACTGCTTTTTTCAGCAAGTCCGCGCAATTGCCCGTGTTTTAGCAACGATGGCAAACACTTATGCTAAGGGGGG # Right flank : CTGTTAGCGCCGATGTAAAACTGACCCACAGCGCCGAAGTAAAAGTGACCCACCTGGGCCACGATGGTGGCCTTTTGAAGGCTGCTGATGTTGACTCAGGAGCAGGCAGTGGAGATACGTGTGATGGCCCGCAGGGGCGAGAGTGTCAGAGCGATCGCGAAGCAATTGGAGTGCTCGCGCAACACCGTGCGCAGGTACCTGCGCGATCAAGATGCGCGGCGGTACGGCCCGCGCGAGTCCAGGGCCTGCAAGCTCGACGGCTACCAGTCCTATCTGCGTGAGCGCGTCGTGCAGGCGCATCCGCGCTGGATCCCGGCGACCGTGCTGTTGCGCGAGATCCAGGGGCGCGGCTACACGGGCGGCATCAGCCAGCTCAAGGCCTTCCTGGCCCCGCTCAAGCAGTCCGAGCCCGAGCCGCTGGTGCGCTTCGAGACGCCCCCGGGTCAGCAGATGCAGGTGGATTTCACTTACGTGCGCCGGGGGCGCGATCCGCTGCTGGC # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2021546-2022830 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020889.1 Xanthomonas citri pv. citri strain TX160197 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2021546 31 100.0 36 ............................... TCGAGCGCATCGATGACGGTCACCCATCCCCCAATG 2021613 31 100.0 36 ............................... GTGCCACCGACAGCGACGCACGTGGACCTGCAGATC 2021680 31 100.0 34 ............................... CTCTCTCACGCCGCGCGTGCGAGATCCTGCGTGC 2021745 31 100.0 36 ............................... GCAGACTGCCGAGGCCGGCATGCTGGAGGGGCGCCT 2021812 31 100.0 37 ............................... GGGTTAACAACGCCTTGAAACGGCTTTGCCGCGACGC 2021880 31 100.0 36 ............................... ACGTCTTGGACCTGGGTGTGGTTGCTGAGATAGTCA 2021947 31 100.0 35 ............................... GCCATCATGCTTTGAATGCGCTTACCCACGGCGAA 2022013 31 100.0 35 ............................... GCGGATATGTGATTAGACCCTTTTACGACTTTCAG 2022079 31 100.0 35 ............................... ATGTCGAAAACGATGGCCTTGACGTCATCGTCTGC 2022145 31 100.0 34 ............................... TTCGCTGGCATCGGTGGATGGAGCCTTGCGCTTC 2022210 31 100.0 34 ............................... TCATTGAACCCAAGGACCACTTCGCAGGGCGACT 2022275 31 100.0 34 ............................... TTGACCACATGTTCTCTCTGTGGGAGGAAGGCAC 2022340 31 100.0 34 ............................... TGTCGAGCGCGCACTGCTGCCGCGATGGCCGGAA 2022405 31 100.0 34 ............................... GGCTGGGAGCGTTACAAGTTTGAGCAGCCCGTAG 2022470 31 100.0 35 ............................... TGGTTCAGGGCTGGAAAGACTTGGATGCCCGCATC 2022536 31 100.0 34 ............................... CTGACTATCCCTGCATAGGCCACGACCTGCGAGG 2022601 31 100.0 36 ............................... AAGAAGACCAGTCTGCGGCGTCGCGGCATCCTGGGG 2022668 31 100.0 34 ............................... CTGAGTTCGTCGCCGTCCCGGTCGTCTGACGCGT 2022733 31 93.5 36 T...........T.................. CATGCCATATGCGGCGAGATCGCACAGCAGAAGGAA 2022800 31 96.8 0 .G............................. | ========== ====== ====== ====== =============================== ===================================== ================== 20 31 99.5 35 GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Left flank : CAAGGACTACTTCAACCGCGCGGTACTCGGGCCGAAGCTGCTGGTGGTCGATGAGATCGGCTACCTGCCGTTCGGGCGCGATGAGGCCAACCTGTTCTTCAACGTCGTGGCCAAGCGCTACGAACGCGGCTCGATGGTGCTCACCAGCAACCTGCCGTTCACGCAGTGGCACAGCGCCTTCGCCGACGACCAGACGCTCACAGCGGCGATGCTCGACCGTCTGCTGCACCATGCCCACATCGTGCAGATCGGCGGAGAGAGCTACCGGTTGAAGGACAAACGCAAGGCCGGGCAAACGGCCGCGAGGGTGACGGCGACGGCATGACCGAGGCAACGCGGTTCGGCTGTCTTGGCCCCGGCCCTGAGCAGTCGAACCGCGCAACGAACAAGACCCCGGGTGGGTCAGATTTACTTCGGCGATCCAACGAAAAGTGGGTCAGATTTAAATCGGCGTTGACATGAAACCGCTGCACGGATGCGCCAGGCGGCGAGGCGATCAT # Right flank : CAATTTAAACTCGCCCCGCCAGCCGGACGCTGACGAGGTGCAGGTTGGACATGCTTGAGGCCTGCGTATGGCAAAGATCAATACGCACGCAGATCAAAAATTGGGCTCCGTCCATCAACGCTTGAGAACCATTATTTGACGATGATGGTCTGAGGCGTGCCTGCAGGCTTGCCGTCCACCATGACCTGCGCGGTGTAGGTGCCGGCCGGCCAGCCATCGGGCTTGCTGAAGCTCAGGTTGGTGGTTTCGGCACCGGTGGTGTTCAACGTCGCGTTCTGTTCGCCAGCCACCTGGCCATCCTGGTAGGTCAGCTTTGCCGACACGGCCACGTTGCTCGCGCTGCCGTCCGTCTTGACCGAGACGATGATGGTGTCTTTGCTGCCGACACTGGTCGCCGGGGTCACCGTCTTGTCGGCTGCGGCCTGGGTGCCGACGGCCACACTGGACACCGTCACTGCGCTACCCGTGGCAGCACCGCCATCGGTGCTGGCCGCACCGGT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //