Array 1 5570705-5571574 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033844.1 Klebsiella oxytoca strain FDAARGOS_500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5570705 28 100.0 32 ............................ AATCACCGCCGTTATTATAACCATAGCCGCCA 5570765 28 100.0 32 ............................ TTCTTCGTGCCGAATACCGAAGATAAACCGGA 5570825 28 100.0 33 ............................ GAAAGCAAAAAGCATCATTGATGGTACGGCGAA 5570886 28 100.0 32 ............................ TACCGATTTGGCGATGTGCGATGCAACGCGGT 5570946 28 100.0 32 ............................ AAAAAGTTGAAAATGCTTTTATGGCGTGGGTT 5571006 28 100.0 33 ............................ GTTCGAATCTTTGGCCTGAATTGCTGGCGACAT 5571067 28 100.0 32 ............................ ATCAAAACCCGGGCAGGTCATTGCTAAAACGT 5571127 28 100.0 32 ............................ AAGAATCGATTCACGAAACGCGCTGTTGATGT 5571187 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCCTGTAAC 5571247 28 100.0 32 ............................ ACCTGACAGACTTGCAGGATATGGACAGCGAC 5571307 28 100.0 32 ............................ TCCACAGAATACGCCTGTGTAAATCCGATCAT 5571367 28 100.0 32 ............................ GTTCCGCGTCCGGGAATGATGGACAGTCAGGA 5571427 28 100.0 32 ............................ AGTCACCTACCACGGGCGCGATGGAATACACC 5571487 28 100.0 32 ............................ TGTGAGGGTGCTGACCTCTCCCTTTCCGGGCG 5571547 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCATCAGCAGCATGCTGGTGGCGAAAGGTTTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCCGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTTGGGGCAGGGCGCTATTCCATTGGTGGAAACTCGGCCTGGCGCTAAGTGCACCAGGGTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTCTCGCCGCTCGTTTTTCAGACCCTTTTTTTGGGAGTTATTTTAAGATATTGATTTTTTAATATTTTTTATTGTTGCCTCAAAAAAAGGTAAAAGGGCTTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5584833-5585401 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033844.1 Klebsiella oxytoca strain FDAARGOS_500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5584833 28 100.0 32 ............................ TGATAGCTCAGGGCGTCGCCCATCGTGAATAT 5584893 28 100.0 32 ............................ GGAAACGTGGCAGATTGACTACAGCGCACGCC 5584953 28 100.0 32 ............................ AGACTTTCTCCCGGGGCCGGATTGTCATTGCT 5585013 28 100.0 32 ............................ GGACGCGGCACACTGGCAGCGTGCGGCAGCAT 5585073 28 100.0 32 ............................ TCGAGCTGACCGGCGACCCCATCATTTTGAGC 5585133 28 100.0 32 ............................ AGATAACCCTGCAATCCTGCACACTGGCAACC 5585193 28 100.0 32 ............................ ATTAGAGATATTCCTCAACGCGCAACCCCAGA 5585253 28 100.0 32 ............................ TGATACCAATTATTGCGTTTATAGCAAAAATA 5585313 28 92.9 33 ...T........G............... AACCTCCCATGCGGCACCATCTTCCGTATGCAA 5585374 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GGTTATCCATCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGTGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTACGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGAACCCTTTTTTATTCCGCTTTTGTAAGCTATTGATTTGATTAAAGTGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAACTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAATGGCGGCCGCGTGGAATATGTTACGAGCGAGGGGAACGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTATGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5593831-5594700 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033844.1 Klebsiella oxytoca strain FDAARGOS_500 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5593831 28 100.0 32 ............................ CACGATGATATTGATACATTACGTATATTTGG 5593891 28 100.0 32 ............................ TTTAACAATAGCAGTTGCAAAAGAATTACTAA 5593951 28 100.0 32 ............................ AGCGGCAAAACTAATATCATCGTCGACAACTA 5594011 28 100.0 33 ............................ TTGCCAAAGGCCGCCCGGTGCCGCCCCTCAAAC 5594072 28 100.0 32 ............................ AGATAGCGAATAGCGTAGGAGTCCCGGATGAA 5594132 28 100.0 33 ............................ TCGCCGAATGAGGCTGGCGGCTATACCGTGCCA 5594193 28 100.0 32 ............................ TGATGATTTTCTTTCTGGCGATATGCCTGATT 5594253 28 100.0 32 ............................ GGCCACAACCGGGTCGGCCTGGGTCGATACGC 5594313 28 100.0 32 ............................ AGTCGTCGTAGTCCTCGGTCATATCCTCGATA 5594373 28 100.0 32 ............................ AACCGGGTATCCGCGACGGAAGGCAACCTGAC 5594433 28 100.0 32 ............................ AGTGGCGGCAGGACGAGCTGCGGGGAAAGTTC 5594493 28 100.0 32 ............................ TGCTGCATCATATTCGCAACTAAATATCTCAG 5594553 28 100.0 32 ............................ TGAAGGCGGTGCAGCTGCGGCTCGATCAGAAC 5594613 28 100.0 32 ............................ TAGCGCAACAATCACTGCGGGCGGCGGTGGAA 5594673 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTGAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCGACAGCGCTCCCTTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTTGTCGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTTAATCGCTAATTAAAACCCTTTTTTATGATGAATCACTATCTTATTGATATTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTAAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGCTTAGGCTTCA # Right flank : ATCGTGGCGGTTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTACGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //