Array 1 199812-198155 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPQH01000002.1 Vibrio parahaemolyticus strain WY3 contig.2.cir, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 199811 28 100.0 32 ............................ GTCATCAAAATTTATCGATAAATTAAAAGAGT 199751 28 100.0 32 ............................ TTAGCCTTAGCTTTAGCCTCTTGCTTGGCCTT 199691 28 100.0 33 ............................ GATGAGGAAATGGCTGAGTTAGCTCGAAACCTT 199630 28 100.0 32 ............................ GTCACAAGGGTGATTTCCACTCCTTGCTGATC 199570 28 100.0 33 ............................ ATCCGTCTAACGCTTCATCAAATGGGTGGTATT 199509 28 100.0 32 ............................ TTTTTTATTGGATTGAAGTTATGACATACCCA 199449 28 100.0 32 ............................ TCGTTGCGTGTGCCTGGTGTTTATAAGGTGCA 199389 28 100.0 32 ............................ GTCAAAACGCGATTGTGATGCAAAACCTCGAC 199329 28 100.0 33 ............................ TATGACAGCTCAATGAGTCTAGCTAAGAAGTTT 199268 28 100.0 32 ............................ CGTCAAGGCTGGTACTCAAACAGAAGCGAAAG 199208 28 100.0 33 ............................ ATACCGCAATATTCACATAAACGAAAGAAATCT 199147 28 100.0 32 ............................ TGGCAGCCTGATAAGAATTGGGCTTCTGGTGT 199087 28 100.0 33 ............................ CAAAGAAAACCGAACTAAAGCTAGCTGCTTCGC 199026 28 100.0 32 ............................ TCGGCGTTGACGCCTGCATTGCAGAAGTTGTT 198966 28 100.0 32 ............................ AACTAGCGCGCTACGCTTACTCAAATCAAAAA 198906 28 100.0 33 ............................ TGAGTTTCTGTTAATGAGCAAGAAACCTCCCTT 198845 28 100.0 33 ............................ AATAGATCGTCGCCGCTGAATTGTGCTAGGTCT 198784 28 100.0 32 ............................ AATAAACCCTGCCAGTGAGTCTGAGAGAGGCT 198724 28 100.0 32 ............................ TTTGCCTTGTGGCAAGTGCATTGGTTGTAAAA 198664 28 100.0 32 ............................ TTTGCGCTTCTTCTATGTACCAACTAGGTTTT 198604 28 100.0 32 ............................ TTAGACAGATTGTAAACCTTGTAGAAGTCATC 198544 28 100.0 32 ............................ TGCTGCCAACAGACTGGCTCGTCGTAACCTTG 198484 28 100.0 32 ............................ TACGTAATATATATTGAAAAATGCGGTAAAGC 198424 28 100.0 32 ............................ ATTAACTCACAGCTGCAACACCAATATTTTGA 198364 28 100.0 34 ............................ ATCATCGATTAGCGTTGAGCGCTATGTTGATTCA 198302 28 100.0 32 ............................ TGTCACAGCCACGAGCGCGTCCCTGGTTAACT 198242 28 96.4 32 .............C.............. TGCCCGTTGTTGTAGCGTTGACCATGCATCTA 198182 28 89.3 0 ..........A..C............G. | ========== ====== ====== ====== ============================ ================================== ================== 28 28 99.5 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : GAACGATGTGACTTACGTTAGCTTTACTCGGAAACAAGTCAAATCCCCTGAGCGAATTGAACGCGATATGCAGAAAAAAGCGGAGCTTTGGGCGGCTAAATCTGGCAGGTCATTACAAGAGTGTCTTGTGGAGCTGGAAAAGACTAAGCCGACCTCGCTCTGTCCATTACCGTTTATCTATTTACATAGTCAACAAACCAAACAACGTTCACCGGATAAGAGCAGCAAATTTCCGTTGTTTATTGAAATGAAAGCTATCGGAGTAAAACAAGAAGGTTATTTCGACTGCTATGGGCTGAATTCCAAACTTAATCGGCAAGATTGCTTAGGGACTGTTCCGCAATTTTAATCAATAAAGGGTAAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATAGGTATAAAATACAGCTAGTTACAATAGATAGATTTTGACAAGGTAAAAACATGATTTTTATCCTATCTATCTGTTGTAACTTTCTTTTATTGATTTATTCTGTT # Right flank : GGCTGAAACGGTGTCCTCAAGTGTAAGCTTTATTCATATCGAGAGCTTTACGCTAAGTCGTAAAATTTAGATTTTATTCTCATAATATTTAGCCAAATAATTTCCTACATTAAGTTTAATAATAACCTTACTTAAAGGTATTTTTTATTTTCCATGTAGGGTAATAAATTTTTTGAAGTGTTACGAAAACCCATGATTATTCATATTTAATTTGCCAAAATTTAACAAAAAACAAAAGTCAAAAGATATGATTGCTTGGAAATAATCGGTGAATAATGCATAAATTAATATTATGTGTATTATTATTGAAATTAATGATTGAAGTGTATCGTCTCGCGATAAGGAATAAAATAGTGTTGTGTAATGTTTGTAAATTGAATTATGACAAAACTATAAGGCTAGGTAGGATAGCCATTTGTGATGAATGTTTGATTTCTGCAAGTGATTTTTATAAAGAGCATAGTCATGAAAAGTTTGAAATTATATTTCATGCAGATATG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //