Array 1 83038-84129 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045960.1 Neisseria meningitidis strain AUSMDU00005726 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 83038 36 97.2 30 ........G........................... GTTTCTTCCCATATACTGCTGTTCAAACCG 83104 36 100.0 30 .................................... CTTCCGTGAGATACATTTCCCAATCTTCTT 83170 36 100.0 30 .................................... TGATTTGCTCGACAGGTGAATAGCCATAAA 83236 36 100.0 30 .................................... AATTTAATACGGCGACCATCTCGTGCCAAG 83302 36 100.0 30 .................................... TCATCAATCGCCCACTCAAACCCAAGCATA 83368 36 100.0 30 .................................... CCGCAAAGCAGCCGAAAAAGCCGACAGGAA 83434 36 100.0 30 .................................... TGACAAATAAAGCACGATTGTTGCAAAAGG 83500 36 100.0 30 .................................... CCAACGGATAAAATTACGCCCAAGCACCTG 83566 36 100.0 30 .................................... GTATTGAGCGTCAAGTACTCGCCATTCGAG 83632 36 100.0 30 .................................... TGAAGGTTCGATAATTCGACCTGAAAAACG 83698 36 100.0 30 .................................... TCACTCTAAAAATCCGATTCTACCACCGCT 83764 36 100.0 30 .................................... TTGGCTCGTCTGCTGCCGTCAATCGTGCGC 83830 36 100.0 30 .................................... TAGATTGCCTCATATACGCCGAGCGGGTAG 83896 36 100.0 30 .................................... CAGGTCGTGCTGGAGCAGGCCGACGATTTT 83962 36 100.0 30 .................................... CATACAGTTCATCTTCACCTGCAATCAGGG 84028 36 100.0 30 .................................... TCTGCGGATTCGTACAAGTCATAAACTTTT 84094 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATCGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACACCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //