Array 1 73904-73471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMB010000012.1 [Clostridium] symbiosum strain DFI.5.64 LHIGEEBO_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 73903 33 100.0 33 ................................. ACATGATTTATAAACGTAGGAGGCGATCACATG 73837 33 100.0 34 ................................. AAGCATCTGTTGGATCTTAGCGTAGTCAATCGCC 73770 33 100.0 35 ................................. CGGCGCATCTAAGTGACTCGTTTTACCAGAAAGAA 73702 33 100.0 35 ................................. GTCTGGCGATGAGACCTATTTCAACGTCGGTCTTG 73634 33 100.0 33 ................................. ACAGCAGATCGTAGAACATGTTGCAAGACTATT 73568 32 90.9 34 .................-...A.A......... ATGCGAAATGTAAAAATGGAGCGGGATGCTATCA 73502 32 81.8 0 ...A.......A.....-...A..A...A.... | ========== ====== ====== ====== ================================= =================================== ================== 7 33 96.1 34 GTCGTTCCCTTCGCGGGGAACGTGGATTGAAAT # Left flank : ACGCATATCCGCCATTTTTGTGGAAGTGAGGAGAGAATTTGCTGGTATTGATTACATATGACGTGAATACGGAGACAGCCGGAGGAAAAACGAGACTCAGAAAGGTTGCCAAGCAATGTGTGAACTACGGTCGCCGAGTTCAAAATTCAGTGTTTGAGTGTATCTTGGACAATGCGCAGTGTGTGCTGCTGAAGTCGATTTTGACAGAGATTATAGATGAAGAGGTCGACAGCCTGAGGTTCTATTATCTGGGCAATAAGTATAAGACGAAGGTGGAGCATATAGGGGTTGATAAAGGAATTGCGGCGGATGACACTCTGATTTTGTAGTGCGAATGTGAAGCACACATGAAAATCCAGGGGGATTCGCACCGGAAAAAGTGCACAAAAAGGGGAGAGAGAGTAGATGTTTGGTTAGATTCTTGAGTGGTATTATGCAGGAAATATTCTAATAATACAAAAATGTGGCTGTGTTGTGATATAATATTGGATATATTTGCT # Right flank : CAAAATCTTCCTCTCCCCTACGCAATACTCTCTATCTGCATCAAAATATCAATACTATGCAGTATAAACAAAATGAAAGCCAGTAACTTTAATTACTGGCCGGCTATAGAGATTTACAGACTCAAAGTAAGTGAATCTAAAAACTCCTCCATTTTCTAATAATAATTACATTACTGTTAATTTAATTTTCCAGAGCAGATAACAAAGCTTCATTGCTCCTTATCCCACCCTTCACTCAACATCAACCCCATGAAACCCAAAAAAATTCCGTGCCGCCTGCGACAGCGGATATTCCTTATTAACAATAAAAGCACTGGTAATAAAAAGATTTTCATCCGAAAAATGTTTCACCGACAGGTCATGAATATGCTGAAAATCGGCCGCTGTCAGGGAGGCCAGGGCAACTGTGCCGAAGGAGCGGGCCCATTCGATTGCGGTTGCATTGGAAGAAGTGATAATTGAAATATTCGGTGCCAGCAGGCAATGCCCAAAGGAAGAGC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTTCGCGGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.80,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 1 110027-110532 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMB010000004.1 [Clostridium] symbiosum strain DFI.5.64 LHIGEEBO_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 110027 33 100.0 36 ................................. TTTCCTTCTGCCAAAAGTGTCGCCCGCTGGGATGCA 110096 33 100.0 35 ................................. TCTGACGATGCGGGAGGATCTGACCGTGGTTTTTG 110164 33 100.0 34 ................................. TATTATCCTTTATATCAAATGGCAGTACAGTACC 110231 33 100.0 35 ................................. TATTTATAATTTGTGTATTAATTGATCCCAGTTCA 110299 33 100.0 33 ................................. TTTATTACCCTGATTCTGATTTTCAATAATATC 110365 33 100.0 33 ................................. AGGTACAAGGATTGATTGCTGAGGATTTATACT 110431 33 100.0 36 ................................. AGATCTAAAGCAAATGATTCTGTGCTTCGGGCAATT 110500 33 81.8 0 .....................ACAA...A...G | ========== ====== ====== ====== ================================= ==================================== ================== 8 33 97.7 35 GTCACAGTCCGCGAGGACTGTGTGGATTGAAAT # Left flank : TTTCCGATTGATATATAAAATAACAGAAAGGGTGTTATAAACCTGACACAACTTTGGATAAGCTAATTCTTAAGGGTATTGTAGAATAGGGAATTCAGAAATGCAGAGCGTAAGGAGATATTCTTTATGTTCTTTAGATAGTAAAGATAGCTTTGAGATATGCTATCTAGATGAAAATATGTGGCTGAATGATGAAGTTGTGTGGAAACGTTGGCAGAAAGAAATAGAAACTATTGTTAAGTGCATACTTAAACAGTATGTGTTGTAGCAAAGACTGATTGAGGATATGGAATAGGCAGTTTGAATTAATTATAATGAAAATGAGGTGTAAGAATTCTGGTGCGAATCCCTAGCAAACATAAAATACCCAGGAGATTCGCACCAGAATAAGGCATATAATATTTGATTTCGAGTGAAGATATAGTATAATATGAGAAGATGATTGTGCATTATGTATGAGAATGCGCTATAATTGGCGGAGAATATCATGCATAATTGCT # Right flank : GTAAAGAAGTAAAAAGTAAGATCCCATAAAAAGTTCTATCCAATAAGCACATTCATACGCCGGAGTGAACGGGAAAGGAAGAAGCTATTTATGCCGGGAAAATTACTTCTAACATGTACTCAGTGCGGCAGGCCTTTCTTTAATGAAGGGGAAAAAGCATATTACGATAAACATCATTTATATCCCCCTAAACGTTGTAAAGACTGCCGCAAAATAAAAAAAGAAAGATCCGACAGACTAAAAAAAGAAGCGGAAGATAGAGCTGGGCAGGAAAGAAAAGAGAAAGAAAGTGCCCGTATCTTATCTTCTATGCCGTATCAAAAATATAGCTTGGCAGAGCTGCCTCTGGATCATTCTAGGCGTACGCTTTACATTATAGGAAATGGCTTCGACTTAATGCATGGTGTCCCGTCAAGATATACGGAGTTTCGGGACTATCTTGGAAAACATTCTGAGCTTAGAAAACAATTGGAGGATTGGAACCTGAAAGAGGATTTGTG # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGTCCGCGAGGACTGTGTGGATTGAAAT # Alternate repeat : GTCACAGTCCGCGAGGACTGTGTGGATTGAAATA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACAGTCTGCGAGGACTGTGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //