Array 1 7247-5165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFDMV010000031.1 Listeria monocytogenes strain 2226 Contig_33_33.4864_508506bp, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7246 36 100.0 30 .................................... TAATCGAAAACGGAAAATCGAAATTGGTCC 7180 36 100.0 30 .................................... TTAGTATGTCGTTTCGTTTCTGGAAAACCA 7114 36 100.0 30 .................................... TCTGGGCGCTATGTATACAGAAGAAGAACA 7048 36 100.0 30 .................................... CATATTATTCTCCCTCCATTAATCCGCGCG 6982 36 100.0 30 .................................... ACCCCTCTTGAAATTGAGACGAACGGAGGG 6916 36 100.0 30 .................................... AATGAATTTATAGCATTTATCGAACCAATT 6850 36 100.0 30 .................................... CACTGCTGTAGCCGCTGTTTTAGCCGCTCC 6784 36 100.0 30 .................................... AAAAACCTGTTGTCCCCTCCGCAGTGGCTC 6718 36 100.0 29 .................................... AAAATAAATCATTCTATAACACGGATGCT 6653 36 100.0 30 .................................... CTTCGGTGTATCCTGCCAACCGTAGCGCTT 6587 36 100.0 30 .................................... TTTCTGTCAGTGTTTCATCAACACTTATCA 6521 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 6455 36 100.0 30 .................................... GAAAACATCTATCAGACTCAAGACCAAACT 6389 36 97.2 30 .....................T.............. TTGATGAAAGGTGTTAAGGACATCATAAGC 6323 36 100.0 30 .................................... AAAATATAATCAGAAGGTTTCGGGCTACCT 6257 36 100.0 29 .................................... TCCAATGCTTTTTTTACATCTCTCGGAAT 6192 36 100.0 30 .................................... TTGGATATTAACCCTTTTCAAACATCCGCA 6126 36 100.0 30 .................................... CCCTGCTTTGTTGTACAGGAAATATTATTC 6060 36 100.0 30 .................................... TCAGCAAGATTTAGATCACTACTTGTTCAC 5994 36 100.0 30 .................................... TTCATCTGTACCCTATCAAGTATTAGCCGA 5928 36 100.0 30 .................................... GCGGCTAAAGTGATTTGACCTTTACAATCT 5862 36 100.0 30 .................................... TACTGCTCCATTTGTCCCTTTCGCAAAGCC 5796 36 100.0 30 .................................... GCATTAAAGCATTTGCGCCACGCAACGTTT 5730 36 100.0 31 .................................... CAGGCGCGTGCGCGACGTTTCTGTCAGGCGC 5663 36 100.0 30 .................................... AGTTATTTGGAACAATGGTAATGGAACACA 5597 36 100.0 30 .................................... GACTTCGAAATGGAGTTATTGACTCTCAAA 5531 36 100.0 30 .................................... AAGAGCCGGAGCTACTTCCTGGCACCACAC 5465 36 100.0 30 .................................... TAACTCACTGTCACTAGCTCCTGATGTTGT 5399 36 100.0 30 .................................... AGAATTTCTCTTTGATTTTTTGTATAGTAC 5333 36 100.0 30 .................................... TTTTTTGATCTATTAGTAAACTGTTCGAAT 5267 36 100.0 28 .................................... TAATATTCTCCCCCCATCGCTAACAGGG 5203 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5168,5171,5176] ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.5 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAATTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //