Array 1 340568-340840 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRF01000007.1 Salmonella enterica subsp. enterica serovar Tennessee strain FSF0063 contig0006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 340568 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 340629 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 340690 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 340751 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 340812 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCGTGTTCCCCGCGCCAGCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 214725-212315 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRF01000009.1 Salmonella enterica subsp. enterica serovar Tennessee strain FSF0063 contig0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214724 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214663 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214602 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214541 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214480 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214419 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214358 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214297 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214236 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214175 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214114 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214053 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 213992 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 213931 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 213870 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 213809 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213748 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213687 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213626 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213565 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213504 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213443 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213382 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213321 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213260 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213199 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213138 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213077 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213016 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 212955 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 212894 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 212833 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212772 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212711 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212650 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212589 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212528 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212467 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212405 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212344 29 96.6 0 ............T................ | A [212317] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232230-231348 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWRF01000009.1 Salmonella enterica subsp. enterica serovar Tennessee strain FSF0063 contig0008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232229 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 232168 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 232107 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 232046 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 231985 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 231924 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 231863 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 231802 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 231741 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 231680 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231619 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231558 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231497 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231436 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231375 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCAGCGGGGATAAACCGGGCCACTTATCAGCAAACCGGGCATCCAGAA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //