Array 1 908317-909610 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077959.1 Streptococcus equi subsp. zooepidemicus strain SEZ_14-145 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 908317 32 90.6 36 .........CA.A................... ATTTTGTTGCCCTTGCTTGTTGGCATCTTTAGTACC 908385 32 90.6 34 .........CA.A................... TCTAAGCGACTGCTTTTTACTATCCAATAGAAAG 908451 32 90.6 33 .........CA.A................... GTATTTATCCATATTATCTAGACTACTAACATT 908516 32 90.6 34 .........CA.A................... TTCTCCTTTTCAGGAATCAATGGTTTCAGCGTAT 908582 32 90.6 35 .........CA.A................... AATGACTGAGAAGGAAAATTTTGTTGAAGAGTTTA 908649 32 90.6 33 .........CA.A................... TTTTCAGCCTCAGCCTTAGCTTGTACAGCTTGA 908714 32 90.6 33 .........CA.A................... ATAATTTATCTTTGATATTGTACAATATATTGT 908779 32 90.6 36 .........CA.A................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAG 908847 32 90.6 35 .........CA.A................... TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAG 908914 32 100.0 35 ................................ TTTGGCATGCCTCACATCAGACTCATGTCTAGCAT 908981 32 100.0 35 ................................ CCGACACTGCGAACTAATCATTTGTGACTCCTTTC 909048 32 100.0 34 ................................ CTAAAGAGGTGAACGAATGAATAAAAGCGAAATC 909114 32 100.0 33 ................................ CTCTAATTTTAATAACTCCTGAGCACCAGTTTG 909179 32 100.0 35 ................................ TTTGGCATGCCTCACATCAGACTCATGTCTAGCAT 909246 32 100.0 35 ................................ CCGACACTGCGAACTAATCATTTGTGACTCCTTTC 909313 32 100.0 34 ................................ CTAAAGAGGTGAACGAATGAATAAAAGCGAAATC 909379 32 100.0 34 ................................ ATAGGCGCGGCCTACCTTGGATAAATCCTTGACA 909445 32 100.0 35 ................................ CAATCGTTGAAGATCATCATGCCACCGTTTTTAGT 909512 32 84.4 34 ........T..CAT.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCA 909578 32 87.5 0 ........T..CAT.................. | T [909608] ========== ====== ====== ====== ================================ ==================================== ================== 20 32 94.4 34 GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Left flank : AAGGCTATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCA # Right flank : TGCGATACGTGACTTTACGATGTTGCGACTCCGTTTTGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAG # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCCATACGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : NA // Array 2 1234303-1234865 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP077959.1 Streptococcus equi subsp. zooepidemicus strain SEZ_14-145 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1234303 36 100.0 30 .................................... AGTGTCAGGTTGTTTTAGATTCAACTGATT 1234369 36 100.0 30 .................................... CTGAGAACGCTAGTAACGTTGCAATTGTTT 1234435 36 100.0 30 .................................... AAGCTTGAGTGCAATAGCTGATTGATTCGT 1234501 36 100.0 30 .................................... TCATGTGTCTCCAATCCATCAAAACGACCT 1234567 36 100.0 30 .................................... ACGTACAACCAAAGGTATTACCATATACAA 1234633 36 100.0 29 .................................... TGCCCTGAACTTCAATCAGAAGCAAGACA 1234698 36 100.0 30 .................................... TAAGTATTACGCATTATCAGTCTTATGATA 1234764 36 97.2 30 ........A........................... ATTTAAATGTCATTAGAAATCGTTTCAAAG 1234830 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 97.8 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAAGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATATATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGCTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGAAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTATTTGCAATTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : TCAGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCCAATGATGAGTGATACTGCGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTACCCACCAGAGGGGATTTATGCTTGCGATAGCTTAGGTTGCCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACTCTTACTTTTATTTTCCTACCCTACTATTGGCAGAAAAGTACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAGACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTACCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //