Array 1 2819-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHG01000017.1 Vibrio cholerae strain N2776 NODE_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2818 28 100.0 33 ............................ CATCGCCAGATTCGCCAATGGTGCGACGACGAA 2757 28 100.0 33 ............................ CTCATTCGAGGGTTGGCTTTATGGTGTTTACTA 2696 28 100.0 33 ............................ CGTGTTGCTTTGGGGGTTTTCGATGACTTCTAA 2635 28 100.0 33 ............................ TGTGATGTTGTCACGCTCGATAACCGCAACAGC 2574 28 100.0 33 ............................ TTCTTGAACGTTTACTTTTTCATTTTCATTCAT 2513 28 100.0 33 ............................ CAGCCGCTGATGCTGATCATCACCACGGCTGGT 2452 28 100.0 33 ............................ TCCGCATCGAGTCGGGCGGCTAGATCTTCGCGT 2391 28 100.0 33 ............................ TCCATACTAGATATTTGTATATTAATTTGCCCC 2330 28 100.0 33 ............................ CTAAAAAAAGTGAACGCAGCCAGAAGAGCGATA 2269 28 100.0 33 ............................ CGTAAACAACGCCATGAAGCTCTCAACGGTTTG 2208 28 100.0 33 ............................ CATTGACCTTTTCCTCTGCTACGTTCATTTGCT 2147 28 100.0 33 ............................ CCCTCTTGTAATAGACTCGGCTTTCACTAAAAA 2086 28 100.0 33 ............................ CCGTCACCAAACGTCGCGCTAGGGAACGATAAG 2025 28 100.0 33 ............................ CACCGTCGCGTCTGTAAACACCACGCTCGTATC 1964 28 100.0 33 ............................ CCAAGCAAACGTCCTTAGCGGATACCCGCTTCC 1903 28 100.0 33 ............................ CTTTGTCACGAGGCACTGCCAAGTGCCAATCTG 1842 28 100.0 33 ............................ TCTCAACCACGGCAGCACGGCGTGATTCGATCG 1781 28 100.0 33 ............................ TGACCATTAGTTCTACATTGTCGCCTATCAACG 1720 28 100.0 33 ............................ GCAAAACCTATAGCGTTTGTTAATGATGGGTTT 1659 28 100.0 33 ............................ TAAGTAAGTTTTGTTTGCGGTTGTAGGTAAGCC 1598 28 100.0 33 ............................ TATTAAAGGCGCTGATTGCGAGGATATTGTGTG 1537 28 100.0 33 ............................ TAGCGCAGTTGCTGGACGAGCTGGAAGCAGCGA 1476 28 100.0 33 ............................ TTTGAGAGAGGGCTTTAAGCGCCTCTGATTTGG 1415 28 100.0 33 ............................ TACAGTTGAGCAGTGCTCGGTATTGCAAACCTA 1354 28 100.0 33 ............................ TATCACTTTGTTTCGTACGGGTATATAGAGGAA 1293 28 100.0 33 ............................ TACCATCGCCGGCGATCGCCTCGGTTATACAGA 1232 28 100.0 33 ............................ CGGACTTCAGGATCCTGACCAAGCCAGCCGATT 1171 28 100.0 33 ............................ CACGATGTAATCAAGCTCTCTGTTGAGATCAAA 1110 28 100.0 33 ............................ TCGCTACCTTGGCAAGCAGGCATTACGATTTCT 1049 28 100.0 33 ............................ CGTTCTTCGCCGCTCACATTGAGTCGCTTGTAC 988 28 100.0 33 ............................ CAGCAGAAACATTTCTATTTCGCTAACAGGCTC 927 28 100.0 33 ............................ TGTACATTATTGGCACCACCAACGCTAAGCCCC 866 28 100.0 33 ............................ CATATCCTCTGGTTTGTATGAATACCCTTTACC 805 28 100.0 33 ............................ TCGAGAAGCTAATGGGGGAGAGATTCCCCAATT 744 28 100.0 33 ............................ TCAAATCCGTTTCAGAGACGGCCATCAATCACA 683 28 100.0 33 ............................ CAGATTTGCCTCCAAGCATTTGCATAATGCCGT 622 28 100.0 33 ............................ TCACGGGCTTTCACCTGTTCAAGCTACCTACTG 561 28 100.0 33 ............................ TTATTATAATCAAAACACTTAAAAGCAGGCAAA 500 28 100.0 33 ............................ CCTCGCTAACACTGGCCTTGTCTGGTATCGCTC 439 28 100.0 33 ............................ TCTTACGGCTTGTCTATTTGGCTCGTCATCGGA 378 28 100.0 33 ............................ TACCTTGGGCTAACCAAGGAGCAAGCGGATGAG 317 28 100.0 33 ............................ TGAGCGCAGGTCAGCGCCAAGAAGCCATCGTGA 256 28 100.0 33 ............................ TACCTGCGTCACCTAATTTCGCGGCCATTGCTG 195 28 100.0 33 ............................ TAATATGGCAATCAGTAGAGATATACCTGAAGG 134 28 100.0 33 ............................ CGTTGAGTTAGCCGCATCCTCAGCCGATAGTGC 73 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : CCCAAGTACAAGCTTGCGTCCATCATTCACCCCTGTCTTCCCCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 47-806 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSHG01000063.1 Vibrio cholerae strain N2776 NODE_282, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47 28 100.0 33 ............................ TTTAGAGATCACGCACGAGCCAGTGGTTCGCAT 108 28 100.0 33 ............................ CATGAAATACCCAAACAGCTACACGGGCGGTAA 169 28 100.0 33 ............................ CTCTAGACGCAATTGACTGCACCTTTTCAGCTC 230 28 100.0 33 ............................ TTGGTTGGGTAAGGCTAAGACTTCGGCTAAGTG 291 28 100.0 33 ............................ TTCTCGTGATTGATGCGACGGCGCAGGCCATTA 352 28 100.0 33 ............................ TTAAAAACACAGGTGTTGGCCGCATCAATCTGT 413 28 100.0 33 ............................ TCAAGAAAAGCTTAGGCAGGAATTGGAACGGGA 474 28 100.0 33 ............................ CTGGGATGTTTTCATCTGGCTGCATGTCATCAT 535 28 100.0 33 ............................ TCATTACTTCATCAGCTCTGGCGTCATCTATCC 596 28 100.0 33 ............................ CCTGAGACCTATCTTGGCGCATGTCTAGCAGGG 657 28 100.0 33 ............................ TCAATTTCATTGCCGCCAATGGTTGCCACGTTT 718 28 100.0 33 ............................ CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 779 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 13 28 97.8 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : GTGGGGGTGTTTCCGCAAATGCCACGTCGCTAGATTTGATAGAATCG # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //