Array 1 47952-47525 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGI01000026.1 Ligilactobacillus agilis strain 268A contig26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 47951 30 100.0 37 .............................. TATTAAGTGATACCAGTAAGATAAATAACATATGCTA 47884 30 100.0 37 .............................. ACTGACCCGGGCTATATCGATGCTTTTAGGGCTGACC 47817 30 100.0 35 .............................. TTCTGTTGTCGGGGAGCTTTTTGCTTTTTATTTCG 47752 30 100.0 36 .............................. TTAACGACGGTGTTTTGAACGACTGGAATGCTTACC 47686 30 100.0 37 .............................. ACTGAACCATAGGCTTAGCCGCCATCTGCGTTGCTTG 47619 30 96.7 35 .............................G CAAAGCGCTAACTTTGGGTTGCAATTCCCAGTTAC 47554 30 93.3 0 .................T.A.......... | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 98.6 36 GAATCTATTTAACTTAAGAGGAATGTAAAT # Left flank : TTCTTCATGTTGGTGAAATTAGGCATGCCGAAACTAAGACGTCTGAGTAGTTTGATTTTACGGTTAATTCCTTCAATAGGACCATTTGAGTATTTAGCAAATTTAGAATTAGCTGCATTCAAAACGTGGGCTAAGTTTTTATCTGTTGTTAAAGTGTTTAAGGCTTGAATTAAGTGATTATTGTCGATGTTTTTAATGTTTTTAGGGTAAACCTCATCACATTTCTTAGTTCACTGGACTTTTTTATAAGAAATTGTTTGTACCTAGAGTGTTGCGGTGAAGCGCGTTTTTTACTAGTGATATTTGGTTATAGAGTGCTAGTATCTGTTGACCTAAGATAAGGTGAAATAGTACTAGTATCGACAGACGATAAAAAGGTTGATATTATAGACTTTGAAAGAATTTAGGAAAAAAAGTAATATATAATTGAGAGTGAGATTGGATGATAGACAGAATATATGTAAAAACTAATTGATAGTACAGGTTTTTGGGAGTGCAGT # Right flank : TTAGCTAATAGCGACTCGAAATCAATATTGGTTATCAAGAAAGCGGGTAGCTAGAAATAGTTGCCCCTTTTCATATTCTAAATTGCAAGTACTTCATAATAGCATGTATGTAAATATGCTACTAACACGGACATGGTACAGGGGGACTATATCAAAGCGTGCTTAGCCGAGATTGTAGGAGAAAGGGTTAAGTCCACGCATGTGGGGAAAATCCTAACCGATATTAGGTGCGTCTATCTTAAAATACTACTATAAATATAACTAGTCTATGATTGAAACGTGAGCATTCAATCATAGGCTGGTTTAGTTTAAGCTAGTTATCGTTGTGATAGTAATTAATCAATTCTTCGTAGGTATCGAGGGGCTCGAAATTGAGGGTCCACTCAACTAAGGGCATATCCTCGGGGGTCAGCTTATAGGCAATTTCATTTGGATCTAGGTAGACGGCTTCGGGGTCAGGTAAAGCTTCTTGCATCACTTGGCCAAAATATTCACTATTC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 388-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGI01000056.1 Ligilactobacillus agilis strain 268A contig56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 387 29 100.0 33 ............................. ATCAACCGCAGATTAGGGAGTCTGTTCGGGATA 325 29 100.0 33 ............................. AAAGTCATCTTTGACAGACTTTTTAGCTTTCTG 263 29 100.0 32 ............................. GAGTTAGGCGATTACTCGGGATGGACTAACTA 202 29 100.0 32 ............................. AACTAATAGATAATCTATAACCATAACTTATA 141 29 100.0 32 ............................. AAGCAACTGAAACGCCAAAGAAATTAGCTAGT 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 6 29 100.0 33 CTTCTCCCCACACTGGTGGGGGTAATCCT # Left flank : TGTACGCAGAATAGCATTATTTCAATCAGTGCCGTACGTAAAGTTAGTGAAGAGTATAAAACTTTTAATCGGTACATAAAAATCAGTACATCTATACCTGAAAATATTGTAAAATTAACGGGTATTACAGATACATTATTAGTCAACGAAGGTGTTGAACTGATAGATGGACTTAAGGATTTAATAAGTTTTTTAAGAAAATCAATTGTTGTGGGCTACAATGTTAGATTTGATTTTGATTTTTTACATGCTGCGTACAAGCAAGTAGGCTTAGACTCACCCGCTAATCGAGTGGTTGACTTGGCAATGCTTGTAAAAAAGGATAATGAATTTTTAGATAATTATCGCTTTGCAACAGTTTTAAAAGAATATGAGGTTGATAATACTCATCCTCATAATTCTCTGTCCGATTCTATAGCGACTTACGAACTTGCAATCAAACTGATTGAAAATGATTGTTTACGAATTTAAAAATACCGGTTTATCAACGTTTTTTTAGT # Right flank : TTAATGACTGTATGGCAGGAGGATGGATTTGGAACTTCTCCCCACACTGGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTGGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 4404-4826 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGI01000057.1 Ligilactobacillus agilis strain 268A contig57, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 4404 30 100.0 36 .............................. ATGTAACGCAATGTCACCGCCTGACTGGAATGGTTA 4470 30 100.0 34 .............................. TCCTTGAACGGTATTAACAATCGCCTCCAATTGT 4534 30 100.0 35 .............................. TCCCTCGTAATCGTCATGTTTTGTGACTCTTTTTG 4599 30 100.0 36 .............................. CAACATTAACGAATATGGTAATGGTGATTTCACTTC 4665 30 100.0 36 .............................. ACCCCCAAAAGCCACGTTTTCCAATCGTCAAGGCTC 4731 30 100.0 36 .............................. TTCCGCTCTCTTAAACAATATAAACAAGCAATCAAA 4797 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 7 30 100.0 36 GAATTTATTTAACTTAAGAGGAATGTAAAT # Left flank : CATATTGGTGAAATTAGGCATGCTGAAACTAAGGCGTCTGAGTAGCTTGATTTTACGGTCGATTTCTTCAATAGGGCCATTTGAGTATTTAGCAAATTTAGGATTAGCTGCATTCAAAACATGGGCTAGTTTTTTATCCGTTGTTAAAGTAGGGTATTTAAGGTTTGAATTAAGTGATCATTATCGATGTTTTTAACGTTTTTAGGGTAAGCCTCATCACGTTTCTTGGTTCACTGGACTTTTTCTCATAAGAAAATTTAGCTGCAAAATTGTTATGGTGAAGTGCATTTTTAATAGTGATATTTTGTTATAGAGCGCTAGTATCTGTCGACCTAAGATAAGGTGAAACAGTACTAGTATCGACAGATAACAAAAAGGTTGATATTAAGGGACTTGAGAGAATTTATGGAAAAAAGTAATATGTAATTGAGAGTGAAATTTAGTGATAGACAGAATGTATGTGAAAACTAGTTGGTAGTACGGAGGTTTGGGAGTGCAGT # Right flank : TAATGTTGATAAAACGGGCGCAAACCTCTGATTTTAATCAGGGGTCAAGTCCGCTAAACTAACTTATCTATTTCTACCATGGTAACCTTTAAGTTGCCTTCCTATAGCTTCTGTATATTGCGATTCAATATTTCTCGAAAGGAGGTTACATAAATGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATTTATTTAACTTAAGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 18137-16452 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKGI01000037.1 Ligilactobacillus agilis strain 268A contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 18136 29 100.0 32 ............................. CAACGAGTATAACGAGCTAGTCGCGGGATATA 18075 29 100.0 32 ............................. ACAATTGCTGAACAAGCAAATCTTACCAAGAA 18014 29 100.0 33 ............................. TATGACATCAGAACACGAAATACAATCAAGAAT 17952 29 100.0 32 ............................. GCCACGCAGGCGGTTATATTCGGCAATTACGC 17891 29 100.0 32 ............................. ACAACTGTATCTTCTTTAAAAGAAACTAATCA 17830 29 100.0 32 ............................. TACTCATTTCTTCCAACTGAAATTACAGAAGA 17769 29 100.0 33 ............................. TATTATTGATTTTTAGAAGGTGTCAAAAATCTA 17707 29 100.0 32 ............................. AGCACTCTAGGCGAGAACTCCCTTACTTTAGT 17646 29 100.0 32 ............................. TTCAGTTCTGCAAAATAATTTCACCAAGTAAA 17585 29 96.6 33 ............................A TTGGAGTCATTATCGCCATCGCCTCAGTCTGTC 17523 29 100.0 32 ............................. TTTGACCCGGATAATCTGCTAGAAACCGAAGT 17462 29 100.0 32 ............................. AACTTCCCATTCCGTGGAACTGTTGACGAAAG 17401 29 100.0 33 ............................. AGACGGTAAAAGAAAGCGCTCCAAAAAAGGGTG 17339 29 100.0 33 ............................. TTAGCATCTTGAAATGCTTTAAGGCTGTTTATA 17277 29 89.7 32 ..........................TAA AACGTGGAACAGTAGTTGGTGCCAAGTATGGT 17216 29 100.0 32 ............................. TATCGGAATTGACTCAGCTAGTTTCATTCCAG 17155 29 100.0 32 ............................. AACTTAGAAACGATTTGCTTGGAGTGTCATAA 17094 29 100.0 32 ............................. CACGAGCATTATGCAAGACTTTGGAAGAAGTA 17033 29 93.1 32 ..........................TG. TCTTATAAGCTAGAGTAAACCCAACACCTAGG 16972 29 96.6 34 ............................A TTATGCCGGCATCGTAAAGCAGATTAGCTTGTTA 16909 29 100.0 32 ............................. TTAAAAATCGTACATTCACATGTGTTAGGGTC 16848 29 93.1 32 ..............A.............C TTTAACGACTTCAGCAGCTTTAGAGTTGATAA 16787 29 96.6 34 ..............A.............. GGAGGCATACCAACTCCGGAAAGCTGAGAAAATG 16724 29 96.6 32 ..............A.............. TAACTATGATAGCAAGCCCCTCAAAACGAAGC 16663 29 96.6 32 ..............A.............. CTGTTCCGGTAAGATTTAGCATAATCTTTAAG 16602 29 96.6 32 ............................C GATGACTTATACGATTACATTGCTCTGTATCT 16541 29 100.0 32 ............................. AGGCTGTTCGAGCTTGAACGTTCCCCTCATCA C [16532] 16479 27 89.7 0 ....................--...G... | A [16454] ========== ====== ====== ====== ============================= ================================== ================== 28 29 98.0 32 CTTCTCCCCACACTGGTGGGGGTAATCCT # Left flank : CACTGGTGGGGGTAATCCTACTAGAATATGTTAACAGCTACGCTCATACA # Right flank : CCATAATGAGACGTATGTAAATATTTTCCTAACCCCCCTATACTACTAACATGGACATAGTATAGGAGGATTTTTTATGGAGTGCTTACGTAGTATGTATGTTGATTTGTTAGATGTTTTCAGTAAGTATATACAAGTAAGAAGAAAATAAAGTAAAATAATAACGTAATAGGATGGTGAAAAATAATTTGTGATATATAGAATATTTTGAGGAGGAATACCATGGTGGAAAAGGCAACAAGGGGAACGTTAACACATGTTGTCCACTGGGAAGCAAAATTAGGTTGGCAGCATATCGATGTAGAGGAAGCAGAAAAAATATATGATGGAAAAACAGTCAGAAGTAGTGAACAGGTTTTGATGTGTTCACTTTGTCATGATTATGTAACCCTAACTAGGTCTAGTGCTAAGCGCCCTGCGTATTTTAAACATAAAAGGATGGAGCAAGAGTCTGTAAAAGACTGTCCGGATCGAAGTGAAAATAAAGGGGGTATTAGTCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTCCCCACACTGGTGGGGGTAATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA //