Array 1 304685-306483 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034233.1 Salmonella enterica subsp. enterica serovar Senftenberg strain ATCC 8400 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 304685 29 100.0 32 ............................. TTCAGCACCGGACGGGCCAGCATACGACTCAC 304746 29 100.0 32 ............................. ACCAGCAGACCAACCATTAACCCTGTAAAGGC 304807 29 100.0 32 ............................. AAATCCCCTAAAGGCATAGCCATCGCCGATCG 304868 29 100.0 32 ............................. GCGTAGCCTTCGCTGCAGCGAATCCGACTCAC 304929 29 100.0 32 ............................. GGCATTGACCCATTCGACCCTCCGGAAAACGC 304990 29 100.0 32 ............................. GCAATTCCGGGCTGGCGTCGCTGGACACGCGC 305051 29 100.0 32 ............................. GCTGGCTGCGCGATTGCCCTGGGTGAATTCGT 305112 29 100.0 32 ............................. CGATCGACCTTAAAAGCATATTCAGGCTTCAA 305173 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 305234 29 100.0 32 ............................. ACGATTTGCGTGGCACGCTGCGCACATTAATC 305295 29 100.0 32 ............................. GAGATAAATAAGGTGATAGAAAAAACAAAATA 305356 29 100.0 32 ............................. TCAGACAGTAAACCTCACGGCCTGACCGGGAG 305417 29 100.0 32 ............................. TTTTAAATCACCACTGTATTTGCTAGCCATCC 305478 29 100.0 32 ............................. CAAAAAGTAACTCCGGCCCCGAATATACGGGG 305539 29 96.6 32 ............................A TCACGATATGAATATGGGGCTTACGTGCAACC 305600 29 100.0 32 ............................. CGCTGCGAGGCCGTGACCATGTTTTCAGTACC 305661 29 100.0 33 ............................. GTGTTGCAAAAGGAGCTGGCCGGTACTGATGAC 305723 29 100.0 32 ............................. GGCTGACAAAATCTGCCGTCGTCTTTCTTCGC 305784 29 100.0 32 ............................. GGCGCTGTATTAACCCACCGGTACTACAACAG 305845 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 305906 29 100.0 32 ............................. AGACAGGTTTTAGTATTTAGTGACCGGGTGCA 305967 29 100.0 32 ............................. GTGAGCGAATTATCAGTAGTTTCATTGGTGTT 306028 29 100.0 32 ............................. GCGCTGGACGTAACCGAAACGGGATTAAAGCA 306089 29 100.0 32 ............................. CTGGGGATCTGCATGGACTCCCGCACGTTGCG 306150 29 100.0 32 ............................. TTGTCAAACGTGGGAGCAAGTTGCCCGGAAAC 306211 29 100.0 33 ............................. TTTTTCGATGCGTTCACGCTCCAGACGTTCGGC 306273 29 100.0 32 ............................. GAGGCGCGCACGGAGGCTGTGCCGCTACGTGA 306334 29 100.0 32 ............................. GGTTTCTGAACTACTCATCTGCCATTCGTGAG 306395 29 100.0 32 ............................. TCCGGGAGCGTGATTACCTGCCCAGCGGGAAA 306456 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATCGCCTGATGCATTACTAATCCTAGGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 322733-323922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034233.1 Salmonella enterica subsp. enterica serovar Senftenberg strain ATCC 8400 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 322733 29 96.6 32 ...........................T. TCTATGTATTCATCAAAAAGTTCTTTTATCGT 322794 29 96.6 33 ...........................T. ACGTTGGTGATACGGAATAGTGGCAATAAAATC 322856 29 96.6 32 ...........................T. ACCAATAACAAACTAACAGGTGTAGAGCACAA 322917 29 96.6 32 ...........................T. ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA 322978 29 100.0 32 ............................. ACCAATAACAAACTAACAGACGATCGCATCAA 323039 29 100.0 32 ............................. GTGAGATTAAAACGGGCTAACTATTTGTGAGA 323100 29 100.0 32 ............................. GCGCTTTTCAGTGACAAAAATGCCTGGAAACT 323161 29 100.0 32 ............................. CGCACTGACGGCGGGTTAGCTCGCCACTTGAT 323222 29 100.0 32 ............................. CGTGATTACGGCAAGGTGCATACGTCCTTTTG 323283 29 100.0 32 ............................. CCGTCGCCGAAATTATTCAGCCTGGACATGAG 323344 29 100.0 32 ............................. TTGACGAATCAGACCGACTCGCACGTTTACCT 323405 29 100.0 32 ............................. TGAACGCGCTACCTACAATATTTCCACGGTCT 323466 29 100.0 32 ............................. ATTTTTTGATGAGCAATCTTGACAAAATTAAT 323527 29 100.0 32 ............................. ATGATTACTATCGCCTGAAGGTGAACGAGTTA 323588 29 100.0 32 ............................. CCATCAGTGATAAATGCTGCAATCGCAGTTTT 323649 29 100.0 32 ............................. CATTCGAGAGCAAAACCGCTGACTAAACTTGG 323710 29 100.0 32 ............................. GATTAACAGTAAACCCGGGGTCTTCTATTCCA 323771 29 100.0 32 ............................. GATACATCTGATAATCCCAGGGATTTCGCTAA 323832 29 100.0 32 ............................. ACTAATACACTGACAATTGACGCAATCCGCGC 323893 29 100.0 0 ............................. | A [323920] ========== ====== ====== ====== ============================= ================================= ================== 20 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGGGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAGATGATTTGGCAACAAATCACGCAGCTTGGCGGTTGCGGGAATGCCGTCATGGCCTGGGCGACCAACACGGAATCAGGATTTGAGTTCCAGACATGGGGTGAAAACCGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //