Array 1 143218-144748 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNV02000010.1 Caballeronia concitans isolate LMG 29315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 143218 28 100.0 32 ............................ CTTTGCTTGGATGTCCTGCTCGATCTGATGCT 143278 28 100.0 33 ............................ GCCATCGCACTCGAAGTCTGTTCCACGTCCGCC 143339 28 100.0 32 ............................ GCCTCGTGATCGCCAGATAGATAGATAGCGGC 143399 28 100.0 33 ............................ TCGAAGGAAATTCATCGTGCGCGCGTCCGTCGA 143460 28 100.0 32 ............................ ATTAGAACGACCGAAACGCTCGCTCGAGGCAC 143520 28 100.0 32 ............................ ACTAGCGTCAGACAAATCATGGAAGCGATCGT 143580 28 100.0 32 ............................ ACCTGCGCCAACACAACCACGCCGTCGTGCGC 143640 28 100.0 32 ............................ TGCCCGACGGATTTCCTGAAGAACCCGAGCAA 143700 28 100.0 32 ............................ GTCAGCCCCATCACGTTGCTGAACAGGTGGTC 143760 28 100.0 32 ............................ CGCCCGCTGCCGCATCATCGCCATGCGTGAGA 143820 28 100.0 32 ............................ CATGGAAAACGTCGTGCTGGGACTGGCTAACG 143880 28 100.0 32 ............................ ATCCCGGCAATTTGGATTTTCGCTGCCGCGCT 143940 28 100.0 32 ............................ CGCTCTTGCTCCGCGCTCAGTGCGACCGCCTG 144000 28 100.0 32 ............................ TGCAACACATCGGGGCGCGCAAGCCGCAGATA 144060 28 100.0 32 ............................ CACACGTGCGGCGTGCGGCGCCACGCAACGAG 144120 28 100.0 32 ............................ AACTTGCGGTTGGCCTTGTTCCGCGCCGTCTT 144180 28 100.0 32 ............................ ATGAAAGCAGGAAGAACGATCCAAATCAGCGC 144240 28 100.0 33 ............................ GGTCGTCGCCGAGATGCCCGACGACGGTTGCTC 144301 28 100.0 32 ............................ AATGAGCCAGCAGCAAACCAAGAAGAAGATCC 144361 28 100.0 32 ............................ ACAAGGTCGCGAGCTACGCGAGCGACAACAAC 144421 28 100.0 32 ............................ TTTCGAGTCGGACGACGACGACCGGCAGCAGG 144481 28 100.0 32 ............................ GATGCCGATACGTTCGTTGTCGCCGCCGTGAA 144541 28 100.0 32 ............................ CTCTGAGGTGATCTGATAGATCGGCTCCGCGC 144601 28 100.0 32 ............................ TGCTGCGCCTCTGGGCGATCAAGACCGGGCGC 144661 28 100.0 32 ............................ TTCGAGGCGCAGCGCGCGCAGTTGCAGCAAGA 144721 28 71.4 0 ...................A.CGCTGTG | ========== ====== ====== ====== ============================ ================================= ================== 26 28 98.9 32 GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Left flank : CGGGCCGCGCGGCCGTCCGGTCACCGAGCAGACGCTGCGTCAGCACTTCGCGCAAGAGATGCAGGAGGGCGCGGTGCGCGCCAACAGCAATGTCGCGCAGTCGCTCTACAACAAGGCGACGGGCGGCGACACGATCGCGGCGATCTTTTGGCTCAAGTGCCGCGCGCACTGGAAGGAGACCGCTTAGGCGGTCGAAGTCACCGGCGCAAACGGTGGCCCGCTGCGCGTGCAGTCGATGAGCGATACGGAACTCGAGGCCATTGTTGAGCACGGGCGACAAGGCCGTCGATCCCGGCGAGGCTGATCAGGCGGCGGTGGCAAATGCCGCGCTCAAGCCGTCAGCGGCGATCTCGGGCAGCGTAGCGCTGAACCCTTTTTTCGGGTCGGCCTTTGCGTACCTGACAAATCAATGACTTAGGGCCAAGGTCAAATTTTGGGTGCCCGAGCCCAAACAGCGTCATTCTCGTGGAGAATCAAGAGGATGGCGTAGAACCCGTCTA # Right flank : GGCGGGCTGGTCCTCGATGATGTGATGAGAGGACGCGAGCAGGCCGACTCGGAGGTGATCCGCGACAAGGTGTACGACGCCTATGAGGACGATCTCAAGACGCGGCTCATGCCCGGCGGCTGGATCGTCTACATAGGTACGCGCTGGCACGAGGATGATCTGGCCGGTCGTATCCTGCCCGAGGGCTGGCACGGCGCGAGCGGTCGCATTGCGTGCCGCGACGGCAACACGTGGGAGGTGCTGTGCCTGCAGGCGCGGTGCGAGACTGACACCGATCCGTTGGATCGTGAGAAGGGCGAATATCTGTGGCCCGAATGGTTCGACCGGAAACACTGGGCGCAGTACGAATCGAACCCGCGCACGTGGGCGTCGCTGTATCAGCAGATGCCAGTGCCGCCCGAGGGCGATCTGTTCAAGCCCGAGCGGATCGGCATCGTGGACATCGTGCCGAGCACCTACATCGAATGGGTGCGCGGCTGGGATCTGGCGAGCGTCGAGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 146967-149940 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNV02000010.1 Caballeronia concitans isolate LMG 29315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 146967 28 100.0 32 ............................ GACAATTTACGGCTGCGTCACCGATCCGACGC 147027 28 100.0 32 ............................ AATGGAAGGGATTCGAGCAGCGGCACGGCATC 147087 28 100.0 32 ............................ AATCAGGCACGCACACGGCCCTTTCACCAGGC 147147 28 100.0 32 ............................ GCTCTGGCGCATGTCGAGCTGCCACCACGAAC 147207 28 100.0 32 ............................ AGAACTTCGAGCAGAGTTTCCTGACGCACGTA 147267 28 100.0 33 ............................ AGCAGATGGCAACCTCCGTTTGAGAAACCAAAT 147328 28 100.0 32 ............................ GTGAATCAACTCGATGCCGACTTCCGTGCGAA 147388 28 100.0 32 ............................ AGTTGAAGCGCTGGTTATCAGCCGGTGAACCG 147448 28 100.0 32 ............................ GCGATGCGGACGCCAAGGTACTCGCCGCGACG 147508 28 100.0 32 ............................ ACGGCCCGCGCTCGATGCAGACGTACGCGCTG 147568 28 100.0 32 ............................ AGCTCGCGCTGAATCACAAGCTGAAAGGCATG 147628 28 100.0 33 ............................ TTGCGCCGCTGCGTGTGGAACGGCCCACACAAT 147689 28 100.0 32 ............................ CGGCGCTTTGCGCGCGATAGAACAGCTTCGTC 147749 28 100.0 32 ............................ AATACGGAGGGTCGAGATAAAAGAACGTGTGC 147809 28 100.0 32 ............................ GCTGCGCTCGTCGGCGTCCATCTGAATGCGCT 147869 28 100.0 32 ............................ GCCCAGCGCAGCGCGATCCACGCGAGACCCCG 147929 28 100.0 33 ............................ TCGAATCCGAGATCGCGCAGATCAGGGGGAGGC 147990 28 100.0 33 ............................ TCGAATCCGAGATCGCGCAGATCGGGGGGAGGC 148051 28 100.0 32 ............................ GATCAATGGGCGCTCACGAACGGCTCCGAATA 148111 28 100.0 32 ............................ GTCGCCCCAGAGTGGGTTTCGATGGCGACGCA 148171 28 100.0 32 ............................ AATCGAGCAATCCGCGAGCAAGGAGGAGCCGA 148231 28 100.0 32 ............................ GAACACTTGGCAGACTCCACTGGAGTTCAAGA 148291 28 100.0 32 ............................ CGCTCGAGTCCGGTGCTCGCACCGCCGCCACC 148351 28 100.0 32 ............................ TGCCGCCCAAGCCTTCCGTGAAGTCGGCGCAC 148411 28 100.0 32 ............................ ACCACGTCCCCATGTCGATTCCCATGCCCGCG 148471 28 100.0 33 ............................ CTGCAACGCGCGTTTGATCTTCGCTACTTCTCG 148532 28 100.0 32 ............................ AACGCCTGAATCGAAGCTGCACGAACCGCCTT 148592 28 96.4 32 ..................C......... AGCATGAGCGCAGAGCCGGTTTATCTGATTGA 148652 28 100.0 32 ............................ AGTTCCGCAACAGTTTCCGCACTCTTGCGAGT 148712 28 100.0 32 ............................ GCAGACGTCGATCATCTTTCAGCGCTTGACCG 148772 28 100.0 32 ............................ ACATCGCTCAACCGCCATGCGCGAAACCGCGC 148832 28 100.0 32 ............................ AGCATGAGCGCAGAGAATCGCGGCGCGAGTGG 148892 28 100.0 32 ............................ CGAACGCCCTGCCACGATTCAACGGCGAAACC 148952 28 96.4 32 ......................C..... AATAACCCCTTCGAGCGCAGCATCTAGCACAA 149012 28 100.0 32 ............................ GCGTCATCAGATGCACGTGCGCGGGATCGTAA 149072 28 100.0 32 ............................ TGCTGCGCTGACGTTCGCAGTCGCCGCGCCGG 149132 28 100.0 32 ............................ TTCGTGACATAGAGCGCTCGATGCTGCACATG 149192 28 100.0 32 ............................ TGATCCGTGAGCGGGTCCGTCTTGTAGCTGTA 149252 28 100.0 32 ............................ AACATCAAACGGCGGCACGCCTGTCGAGCCGC 149312 28 100.0 32 ............................ GGCAGATTCACGTTCTCGCAGCCGACTTGATA 149372 28 100.0 32 ............................ AATACGAAACCGCGCATATCCACCTCAGCTTT 149432 28 100.0 32 ............................ GCACGTAACCGGAGAACAGTGAAATGAACGAA 149492 28 100.0 32 ............................ TTCGTCTGCTGACATGGACTACGAACTGTTTC 149552 28 96.4 33 .....................C...... GAGGCAGACGAAACCGCGCTCGCGTTCGACGAT 149613 28 100.0 32 ............................ AGAGGCAATCAGCAATCGAATCCGCCTGCTGT 149673 28 100.0 32 ............................ GTGCACTCCATCAGCTTCGGCGTCGTGCGCAG 149733 28 96.4 32 ...................A........ GTGATCGATAAGCTCTTCCGCGCCGCGCGCGC 149793 28 100.0 32 ............................ GATCAACGCGAGCTCGGTTGCGCTGTACGCGG 149853 28 100.0 32 ............................ GGCTCCGCGCTCGCGGATGCGGCGAGAAGGGC 149913 28 89.3 0 ............A.........A....C | ========== ====== ====== ====== ============================ ================================= ================== 50 28 99.5 32 GTTCGCTGCCGCGTAGGCAGCTGAGAAA # Left flank : GCCGCTTTTCTACGGACGCGAATGGCATAGCGACGTTTTTTGGACGATTGTCAAATGTGGTGAAGGCGGGAGCGGGGGGCTTTGTCCGGCAAAGGGGCGTTTGCATAAGGGAAGTTCGGGTAGATCGCCTCTGGTATCGCGCCAGAAACGTGGCATTAGAGGAGCGGCGCCAAGAAGCTGGCGATGTGGGCAGCATGGTTTGAAGAAGCTCCCGGTGGCATGCGGCACCATCGATTCGCAAGGACGACGGCAGGATGCCGGATCGGACTCTTACTCAGGTCCGTCAAGTTTCATCCTGCTGCCCGCGCGGACGACACGAAGTAACCTCTGGGCAGGCCTCGCCAGCGGTTTCGGTCAGCGTACCGCTGAACCCTTTTTTTGAGTGGATCCTTGCGTGGGCGATAAATCAATGACTTAGCGCCTAGGCTAAAATTTGGGTGTTCGAGCCAAAAACAGCGTCTTCTCGTGAATAATCAATAGGATGGCGTACAATTGCGCTA # Right flank : CCCATGTCCCCACCAACCACATCCCGCCCGACTTTCGAGATACAGCCGCATCGATCTGAAGACGATTTGTTAGTGTAGGCCGCTCAGGTTGGCGCAGCGGCCCGAAGCTGCGCTCTTTAAGAACGCCACACGACGCCAAAACGCAAATCGCGGCAGGAGAACCACATGGAATCCATACGCTCATCAGATCTAAAAACCATTCTGCATTCCAAACGAGCTAACCTTTACTACCTCGAACACTGCCGCGTTTTAGTAAATGGCGGCCGCGTCGAATACGTGACCGATGCGGGCAAAAGAAATCTCTACTGGAATATCCCCATCGCTAACACGACGAGCATCCTGCTCGGCACCGGCACATCCGTGACACAGGCCGCGATGCGCGAACTCGCCAAAGCTGGCGTGCTCGTTGGCTTTTGCGGCGGTGGCGGCACGCCGCTATTCAGCGCCACGGAGATCGATGTCGACATTGCCTGGATATCGCCGCAAAGCGAATACCGGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTGAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 159392-160019 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCNV02000010.1 Caballeronia concitans isolate LMG 29315, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 159392 28 100.0 31 ............................ GCTCGTTGAGCGCGGCGCGGGCGCGGCGCAG G [159418] 159452 28 92.9 32 .........G......A........... TTTCGATCATCCAAGACGTCTGTCAGCGGATC 159512 28 100.0 32 ............................ GGCGAGACTTCAATCTCGAAAGTGGACGATAT 159572 28 100.0 32 ............................ AACGGCACGGTGTACGGCTCTCGCGCTGCACG 159632 28 100.0 32 ............................ GCCGGGGATTTCGTGACGTACAGCATCGAACT 159692 28 100.0 32 ............................ TCAAGACGGCCCGCGCGATCGGCGAGCATCCA 159752 28 96.4 32 ...............C............ TGACATGCAAACCGGCCCGTTTTCCACATACT 159812 28 100.0 32 ............................ AGGTCCAGCACTGATTCACGGCGGATAACCCC 159872 28 96.4 32 ...........................T ATTCCCCCCAACACAGTTCATGCTTGCGAATT 159932 28 85.7 32 ...T........A.......T....G.. GACGAGAAGATCGAGGGTTGCATCGGGACAAT 159992 28 75.0 0 A..T.T.....GC.G....A........ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 95.1 32 GTTCGCTGCCGCGTAGGCAGCTGAGAAA # Left flank : GACCTGCGGTGTCTGATGGCGCGCGCCTGGCTGCAAGGAATGCGGGATCACGTAAAGCTCACCGAGGCGATGCCGGTTCCCGCCGGGATCACGGCGCATTGCGTCGTGCAACGGCGTCAGTTCAAGACGAATGTGGATAGGTTGCGTCGACGGCGGATGCGCCGGAAGGGAGAGACTTGGGCAGAGGCGGCAGCGGCGATTCCTGACAGCGTGGAGCGAAGTCCCGATTTGCCCTATGTGCAACTGCGCAGTGCGAGCACGGGGCAGTTGTTTTGCCTTTTCATCGAGCAAGCGGAGGTATTGGGCGAGGCGCAGGGCAAGTTCAATCGCTACGGGCTGAGTCAGGGTGTTACGGTGCCGTTGTTTTAAACCCTTTTTTCTGGGCTCGCTTTGGGTGCTTGTTGAAACAAGGACTTAGGGCGAGGCTGGAATTTTGGGTAGGCAAGGGCGAAGAGCGTCATTTCGTTGGGGAATCAAGGGGATGGCGGTTTGAGCGCCTT # Right flank : AGGCGAAACCTCGTCGCGATCATCCTGCCTGAGTGTCTGCCACAGCAGTGGAGAACCAACAAACAACGACACTGGCTACCGGAAACGTTCCAGTGAACTTCAGCCCATTCACTCAAAGTGTTTCATGAACAGGGCACCAACCCGTCGAATACTGATGCGACGCGTAGAGAGAATACGCACCAGCAAATACAAGAAAAAAAGTCCTTCGTGACGTCACGAAGGACCGAAGCAAGCCGGCCACGCACGGGGATGGATGGCAGCGGCAAGGGCCGTGAAGGGCAGTTGGACCGAGAGAATCCGACCTTCGACACCGGTAGTGACTCTACTAAGTTTGATTGCGCGATGTCTACCTTCCGGCCGATAGGTCTCTTATTCTGTCGGAATCGTGCGAGCACAGCGTTCGATGACAGTTCGCAACGCGTGGCGCGTTAGAAAACTTCCGCTACGGGGAAGCCCGTGCAAGTTGCAGACTCCGCTACCGCAAGCGGCTCCGCTTTCAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGTAGGCAGCTGAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTGAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //