Array 1 10661-9110 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZG01000026.1 Campylobacter concisus strain AAUH-10HCce 1105145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 10660 30 100.0 37 .............................. ACATAACTGGTTCTGTTGATTATCATCCCAGCAAAGA 10593 30 100.0 35 .............................. CATACCACGCCGAAAGCTCATCGAAATCCTGCGTT 10528 30 100.0 34 .............................. ACAAGCTCGTGAGATTTTGGCTCGAAATAAAAAT 10464 30 100.0 37 .............................. ATGAGTAGATAAAATGCTTAGTTTAATCATTGGTCCG 10397 30 100.0 39 .............................. AATGCTTTTTGGTTTAGCAATTTTAAGAGTTGTGAGGAT 10328 30 100.0 38 .............................. GCGTTTGCAATATTGCCGTTGTTGTTTTCTAGCATATC 10260 30 100.0 37 .............................. AAAGATCATAAGCTTAGCTTTAAAGTAGTGCTTATGA 10193 30 96.7 36 ..................A........... CGCCCCTAAAGCTACCAAGCCTAAAAGCCCAAAACA 10127 30 100.0 37 .............................. TATAGGGGCTATCTTATTTTTGAGCTTTGTAGTTGGC 10060 30 100.0 34 .............................. TCTATTGCTTTGTCGATTACGGCGCTAACCCAAG 9996 30 100.0 37 .............................. CTTGGAAAGAAAGCGACGAAAAGCAAACTTGGTCTAG 9929 30 100.0 36 .............................. AACTGGTGAAGTTGGCCTATAAGCTCTCCACTTCCG 9863 30 96.7 35 .........................A.... GCGTCACTTTGCAAAAGTCACTAACCGCTCCGCCG 9798 30 100.0 36 .............................. TTTATCGCCGTTGAAACAAAATCCCCTTATTTTGTA 9732 30 100.0 36 .............................. TCAACAGTCTCAGGCGACCAACAACCAACTGGAAAA 9666 30 100.0 34 .............................. GTAGATTGATTGATTGTATTGTTTGGCTGCTAAA 9602 30 100.0 36 .............................. AAAGCGTGGCAGCACCCTCTTTTCCATAACCAATAG 9536 30 100.0 34 .............................. ATTCGTCAAAAGCAGAATACAAAGATCGACGGCT 9472 30 100.0 37 .............................. GTGGTTTTGTTTCTTGGCGTGGCACCGAGTGGATAAA 9405 30 100.0 36 .............................. CCTATACCACTACCAGCAGTCCAAATGATAAGCTCT 9339 30 100.0 38 .............................. CACACTCAAGATACGTTTAACAACAAAGACTATAACGA 9271 30 100.0 34 .............................. GTTGAGCTTGTAGGTAAATTTTACAAGGCTAACT 9207 30 100.0 38 .............................. GAGATAAAGCTTGCGACACGACAATAAGACTTTTTTGC 9139 30 96.7 0 ...........G.................. | ========== ====== ====== ====== ============================== ======================================= ================== 24 30 99.6 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : AGCTAGATCCTCGTATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTACATCTCGATCTTGCGGAGATTTTTAAGCCGATCTTGGGAGATACGCTGATTTTTAACATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAAATTATCTCGCGCCTTTGTGAGACGCTCACGGTGGGTGGTAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCCTATGAAGGCTTTGGGTCGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTGCACATGGCTAAAATTTAGTCAAATTTAAGGCGAAAAAATATAGACTTCTTGCACTAGAATGCCTATAAAATAGGCTTTTTGGTGCT # Right flank : ATATGTTTTCAACTTAATTTTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGGTTTGAAACTACGTCTTTGCGATCAACTATGTAAGGTATGATAGCTGCGTGGCGAGCTCTCTTGATTGCTTTTTCTACCATCTCTTGATATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTTAAAAGTGAAGTATCCTTGTAATCTATAAAATCAATTTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTCTCTTCATAATACTCTTGTTGCTTTTTATTTTGTGGCTGTGCTTGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 229-564 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZG01000083.1 Campylobacter concisus strain AAUH-10HCce 1105202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================== ================== 229 29 100.0 46 ............................. GTTATTGTGTTTTTTAGTTTTATGATGCCTGCTTTTGTATTTAAAC 304 29 96.6 48 ........................A.... CAGCTTACGGCATATTGCTTTTCACCGATGACTATTCTGTATTTAAAC 381 29 100.0 43 ............................. TTTTCGTAGTTAGTCAAAACTTCTATGTCTGCATAATTTAAAC 453 29 100.0 52 ............................. CCACTTTTTCCGTATGTGTATCCGATCACTTCAAAAAGCGCGGAATTTAAAC 534 29 86.2 0 ............C..T.........CG.. | A,A [557,559] ========== ====== ====== ====== ============================= ==================================================== ================== 5 29 96.6 48 AAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : TCGTTATTCACTTCAACGCTCGATTTTAAAATTGTCTTATTATATATGATTTAAAGGTAAATGTTTATGATTTTTAAATTTTTGTTTAAAAATTATTATTTTTTGTATATTTTGTGCGTACCTTCACCACTTTTGATTTTTAGCTTAAATTTCCATCTTTTTGGCTAAAATTTCAAAAATTTGTGATTTTAAAGATATTTAAAATAAGTTCTTTTACTTATCATTGTTA # Right flank : CCCATACCACATTTAAAAAGGTAAATTCAAAATGTTTACTAAAAATCTAGAACACATATTTACAAAAGCTGCTTTAAGCTCTGCATTTGACGAAATTTCTGCAAATTCTTTAGGTTTAGACGAGATCTCGTATGCTGATTTTAAGAAGAACTTTGACGAAAACGCAGACAATCTCATAAGCTCATTATTAAATGGCACCTACACGCCAGAACCGCTAAGAAAGATCAACATCCCAAAAGAAAATCGCAATGGCGTAAGACCCATAGGCATATCCTCTATAAAAGACAAACTAGTTCAAAAAGTCCTATACTCAGAGCTTAGTCCATACTTCGACGAGACATTTTTATCAAATTCCTACGCCTACCGCCCACACAAATCCACCTACAAAGCCATAAACAGAGCCAGCAGTTTCATAAACGAAAATGACTGCTGGATACTAAAGGCCGATGTAAAAGACTTTTTCGAGTCGGTAAACCACTCCAAGCTACTAAAAATTTTGC # Questionable array : NO Score: 8.76 # Score Detail : 1:0, 2:3, 3:3, 4:0.83, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 3549-4721 **** Predicted by CRISPRDetect 2.4 *** >NZ_POZG01000083.1 Campylobacter concisus strain AAUH-10HCce 1105202, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 3549 37 94.6 37 ......................TT............. TTGTTTTGTTTCTCACCTTTAATAACTACTGAATAGT 3623 37 94.6 35 ......................TT............. GGGATGTAGTTTAGATTCCTAGCGATTTTATCGCC 3695 37 94.6 42 ......................TT............. TTATCTCGACTTCAAGTAATTCAGCTGTTTCTACAGCAACAT 3774 37 94.6 39 ......................TT............. TTTCTTCGCAAGTATTAGAAATATGATTGATCCTACGAT 3850 37 94.6 36 ......................TT............. GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 3923 37 100.0 37 ..................................... GTACTAAGAGATCATATAATCCCCATCTAACCTTATT 3997 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 4074 37 100.0 36 ..................................... GATCTTTAATAAATTGTAACATGTTGAATCCTTTAT 4147 37 97.3 40 ......................T.............. CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 4224 37 100.0 40 ..................................... CCATTATAGTTAGCATTAAGTTTCTTAATATCTAGACCAC 4301 37 100.0 39 ..................................... GTCTTTTGCCATTAGTCTTTCTTTTAGAGATGCCATTGT 4377 37 100.0 35 ..................................... GCCATAGTGTTCTCCTCTGAATAAGATTTAATTTC 4449 37 94.6 43 ....TT............................... GTTATACATATAGCTTCTCTTATTGTAAACTGTAGCTTAGGAT 4529 37 94.6 38 ....TT............................... GTGAATTCGTCTTTGTCTAAGTACCAGAATGGTTTTTT 4604 37 94.6 42 ....................C..T............. ACTCCAGCGATGAACGCTGCAACTATCTTAGCTTAGCGAGAA 4683 37 94.6 0 ...................................TT | T,A [4694,4716] ========== ====== ====== ====== ===================================== =========================================== ================== 16 37 96.6 39 ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Left flank : GCTTTGAGCTATGTGATAAAAAAGGTATCTTTGAGGCGCAAGAGCTCTTTGTCTAGCTTATGTCGTTCTTAAATTTCTTTTGAGTTTTTGATTTGCGAACTTTTTTAGCTGAAATTTGACCCTTTTTGGCTAAAATCTCGCGAAATAGGTTCGCAAATCTGGTTTTTTCAAAATATCTCTCATACATTTGCGAACTTTTAGTTATGCCTAAGTTTAGGATAGCCTATTTTAGGACCTTGCGAAACTTATATACCGCTTAAAGTTCGCAAACCTATAAAATTTGAAATTTTTAAAAGAGATTTGCGAACTTTTTTAAGATGACAAATGCCTAAATTTATGGGTTCTTTCACTTATCATTGTTGATTTTACGGAGTTAGTATTTTTTCATACCCATACATTTGCGAACTTTTTTGAGCTTTTCGCGAATTTTGGGTATCTTTAAAGCCGGTTTCTTAAATAATTTTGCTAATTTTTCCTTTGCAAAAATAGTCTTTTAGGCT # Right flank : TTACATGTATATGTAAAATATTAGAAATAAAGGATATGGCAATAAGAGATCATAGAAGTAATAGTAAAAGTAGTGAATGTAAAAAAACAATCTTATAGTAAGTAAAATGTAAAAAGTATGATGATGAAAGTAAAATCAAAAATACAATGATAGTAACGGCAGTTAAAATAGAAATAAGCTTTATAATGTCGCTGTATATGGAGATATTATCTCTATAATCTATAATAAGTCTTTATTGCTCATCACATATCTCCTCATAAATTTTTGAGCCTATCTTATATAGTGTATATGCTGATATAGCAATTTTAGTTATAGCCTCTATGGTTGGTATTATTAAAATTGGCATGTTATCTACCTTTTTTGTCTGTTAAAACGTCGATAGCCTTTTTGGCAACATAAAACTCAATAGCAGCTTTAGCGAGCGCCTCTAAAATTAAAACAAATGGCATATTTAACCCTCCCATTTTTGATTTTTTACATATTGGCAAGTGACTTGCTAC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:0, 3:3, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAACAAATTTGACCCGATCAAGGGGATTGAAAC # Alternate repeat : ATTTAAACAAATTTGACCCGATTTAGGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //