Array 1 52398-53158 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVEP01000013.1 Carnobacterium sp. PL26RED25 13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52398 36 100.0 30 .................................... GGTTTGGTGTAAGCGGTGATTACTTTGTAG 52464 36 100.0 30 .................................... GCTTAGCCCCACCGTTCAATCTGTGCATTA 52530 36 100.0 29 .................................... TAAACTACCAGGAAGGAGGACAACATGGC 52595 36 100.0 30 .................................... GTATCATCAAGCTCAATTGCTGATAATTCA 52661 36 100.0 30 .................................... AGGACGATTTGTTTATTTTTATATAAGTCA 52727 36 100.0 30 .................................... CAACGTCAGAATAGATAAAATAATTTGCTA 52793 36 100.0 30 .................................... TCTTCTTTAAACTTCAGGAACTCCACAAAT 52859 36 100.0 30 .................................... AGCGTGAGGTTGATTCAGAAGGCAATATGG 52925 36 100.0 30 .................................... GTCGAATTATATGCACTTGGATAGTATGAG 52991 36 100.0 30 .................................... TATAATTCAGCCATCACAATAAAAGGGTGG 53057 36 100.0 30 .................................... AGCATAATATTTAGCATCTTATCTGGCGCT 53123 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTACTGATAGGAAATTATTGAGAGTACAAAAAC # Left flank : AACCACCATACTGCTGATGATAGCCTCGACCGATAATTTGGCTATTCTTTACGATAACTGCACCAACCATAGGATTAGACCTTGTCCAACCCTGTCCTAATTTGGCTAGGTCAAGTGCTTCTTGCATATAGTCTTTCATTCACTCATCCTTTCTCTAAACAACAAATAATCCAGTCAGAGTGACGAAAAAAGCCCTAGAAATAAGATTCCTAGGGCACACAAATAAACTATAGACTTATAGTATTCGTTTATTTTGATTCTACTCTTCTTCCATCCAGACTCTACTGTCGGTCTCGGAATTACACCGAGTCAGCCCCTAATCAAAGGAGGTCGCGGACTTTACCGCCGGTCGGGAATTACACCCTGCCCTGAAGATTTTATTTGAATGTTTATGGTGATATCATACGGTATTAAAAAGAAAATGTAAACCCAAATGTATTTTTTAAATTAAAAATATATACTATAGGGTATTTAATATCAATTAACATAACAGTGATATT # Right flank : TATCATGTTATTTTTAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACTGATAGGAAATTATTGAGAGTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [85.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1953-69 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVEP01000005.1 Carnobacterium sp. PL26RED25 5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1952 36 100.0 30 .................................... ATGAAATATTTAAAAAGATATCCAAATCGG 1886 36 100.0 30 .................................... AAAAAGTGGCAAATGAATGGTATAAGTCCT 1820 36 100.0 30 .................................... CATTAGTTATCACAGTCATTCCAACAAGTG 1754 36 100.0 30 .................................... TGATAGCGTTCAAGAAGATAACGCATTTAT 1688 36 100.0 30 .................................... ATTAAATACCAATAAATTGTCTGAAGTATT 1622 36 100.0 30 .................................... CGTAACGCAATTGACTTTGAAGCCCGTACA 1556 36 100.0 30 .................................... TAATTGTAGCAATAGACATAATTCTCGTTT 1490 36 100.0 30 .................................... CGTAGATAATTTTTAAGTCACCATCCGGGC 1424 36 100.0 30 .................................... ATTAGCAAATTTACCTGATCATTGTATGTT 1358 36 100.0 30 .................................... GTGGTTTAGTAAACCCAGCCACTTCACGGT 1292 36 100.0 30 .................................... CATTCAACTCACACTCCTAACTGGTTCAAG 1226 36 100.0 30 .................................... CTGTATTCACTTTAATTTGACAACCTTCAT 1160 36 100.0 30 .................................... TTCAGGTACTATGAACTATGTGTATCTGGA 1094 36 100.0 30 .................................... CTGGTAAACCAAAACAAGAATTACTCGATA 1028 36 100.0 30 .................................... GAAGAACTGAAAAAGTTAGCTGATGGCTAT 962 36 100.0 30 .................................... TTTCATAATGTCGCCCCTTTCAATATACTA 896 36 100.0 30 .................................... CAGTGGGCACGCCCGTGCGATCTTTGTTGT 830 36 100.0 30 .................................... TTATATTATAACGTAGTAATGTAGTAATTG 764 36 100.0 30 .................................... TAAAAACGAGCAGCATTTAACGGATAAGAT 698 36 100.0 30 .................................... CAAAAGCATATTATTCTTACTACTCAGACT 632 36 100.0 30 .................................... AGGGCAACGTAGCTGGTAGCTTTGGATTAA 566 36 100.0 30 .................................... AAGTACTCAAGGAAATATCATTGCAAGGTA 500 36 100.0 30 .................................... AAATAGCTAGTTGTTTTTCTTCCGATGCAT 434 36 100.0 30 .................................... TAGGTACGATATCATTACCGTATCCTCTAA 368 36 97.2 30 ...........T........................ CGATCCAGATACAGTTAAATGGTTTGAACT 302 36 100.0 30 .................................... CCAATCTGGGATTACATCAAATAACCTACT 236 36 100.0 30 .................................... AAGTAATTCAGAACGTGATACATTCTTTAA 170 36 100.0 30 .................................... TTAATATCAGTATTAGCTGATACTAAACGC 104 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 29 36 99.9 30 GTTTTTGTACTCTCAATAATTTCCTATCAGTAAAAC # Left flank : GTGTCACGCACTATTAGTCAGAGCGGTAATAGAGTTTGGATTATTCTTGATGGGATTGATAGACATCTTTCACAAGATGACTTTAAATACTTATACGATTCTCTAGTAGATATTTCTAGAGATACTCAACGGTTGAATGTAATTTTATTCAATGTGGATTATGCATTGTGGCGATTAAATATTGCACTAGAAGATTTTATTGTAGTCTATAAGGAAATACAGCAGCTCTATCCAATAAATGAAATGTACCAAAGCATTGAGAGACATTACCCTGATAGTTTCATAATAGATGAGGAGAATTTACAGCAAAGAATTTTGACCGTAATTCCATATATAGGATATTCTGAAGTAGTTTCTTTAAGCAATAAAAATATGGTAATATTAAAGGTGCTGAAGAAGTTGTTAGGCGATGAAACAAAAATTGAGACGTCATTTGAATCGCTAAGCAGCTTGGAAAAATTATTTCTTGAAGACTAAGGTCGATAATTTTTGAATTTGAG # Right flank : CTTATGTTTACACCGACGAATTTACAATTTAAGTGCAACAACAATAATAAAATAAAAAAGATCCATAGT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCCTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 20185-15926 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVEP01000012.1 Carnobacterium sp. PL26RED25 12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20184 36 100.0 30 .................................... GGTGGCTATTATGATACAACAACAGGTTTA 20118 36 100.0 30 .................................... TATCAGCTTTTTGGGACTTCCTAGAAAATT 20052 36 100.0 30 .................................... AAATAATCCTAATCTTGAAACGGTTCTACC 19986 36 100.0 30 .................................... TTGACGACATGATGTAAGGAAAACTGAATA 19920 36 100.0 30 .................................... AAAGGAACCGTTCAAAACTAGTAGTAGCTT 19854 36 100.0 30 .................................... TCCATATGAGCAATCACATCTGCTAAATTG 19788 36 100.0 30 .................................... TGCTTTCGAGTTTAACGATGGTACTACAGT 19722 36 100.0 30 .................................... TACTGGCTTAGAGAGCATATACAATTGCTC 19656 36 100.0 30 .................................... TTACCCTTGTACCGTCCAAAGTCAAAGGGT 19590 36 100.0 30 .................................... AATATTGAGGATTATGCCACGTATGGAGCA 19524 36 100.0 30 .................................... TCCTGCGACAAGACTTCCGGCTCGTCGAGT 19458 36 100.0 30 .................................... TCATTCGTGACAGTAGCATATTTCATTGGT 19392 36 100.0 30 .................................... AATTCTATTTTCAGTTGTTTGACGAACACT 19326 36 100.0 30 .................................... TTGGTTGCTAAACATCCCAATGGAGCGCCA 19260 36 100.0 30 .................................... CCATCAGCTTTACCGTCCATGTTTCTGTTT 19194 36 100.0 30 .................................... ATTAGTCCTTGTTTTTCCCAAGCTTTTATG 19128 36 100.0 30 .................................... ATTAAAAATGCTGATGGAACTCATGCTATG 19062 36 97.2 30 ............A....................... AACTCTGTATGGCATTCGTTCAAATAAACT 18996 36 100.0 30 .................................... TTGGGCATCGGCTATTGAATTTAACTTCAA 18930 36 100.0 30 .................................... AGACAGTTATTAGAAACTTGTTGAGTAAGT 18864 36 100.0 30 .................................... CTTACTTCGCAATCTTCACGCATTTTGGTT 18798 36 100.0 30 .................................... TGAAGTCAGAGCATGATGTTAAACGCATCA 18732 36 100.0 30 .................................... AAGGGTAAAGTTTTTTGGTATAGATATGAA 18666 36 100.0 30 .................................... ACGAAAATGGTGGAGAAAACGGAAAGTAGG 18600 36 100.0 30 .................................... CACTCCTTGGGTCGCCAAACTTTCGGGAGT 18534 36 100.0 30 .................................... AATAAAATCAAAGTAAAACTATTTAAAGGA 18468 36 100.0 30 .................................... ATAGAATTAAATACTATGACTATCCTGAAA 18402 36 100.0 30 .................................... TTAATATAGAAAAAAGCCCCTATAAAACAA 18336 36 100.0 30 .................................... ATCAACTGAGATGAATAGGCATTTCCTGTA 18270 36 100.0 30 .................................... AGCGGTTAGAAATGGCATCCAAGAGATTAA 18204 36 100.0 30 .................................... TTGTTGTGTAACTGTGGTTGTGGTTAGGAA 18138 36 94.4 30 .........T...............A.......... TTAAAATCTAGTTAAAAACGCTGATTTTAT 18072 36 100.0 30 .................................... TGTAACCATTTCATAAATCACGTCAACTTG 18006 36 100.0 30 .................................... GACGTTAAGGAATTCAAAATTTAGAAGTTA 17940 36 100.0 30 .................................... CAAAAAATTCAATAGTAGAACCTTGCATAG 17874 36 100.0 30 .................................... TACCTTTTACTGTAATATCAACGTTTCTGA 17808 36 100.0 30 .................................... ATTGGGAAAAGATACAATTAATTAAATACT 17742 36 100.0 30 .................................... ATCTTTAAATCAACTGACAATGGTAAAACA 17676 36 100.0 30 .................................... TCTAGATTTCTTACCTAGTTCATCATCCAT 17610 36 100.0 30 .................................... AAGGTGACGCCTTATTCGATAACGTTATAC 17544 36 100.0 30 .................................... TGATTGTGTATGTTTGACTTGCTGTTACTT 17478 36 100.0 30 .................................... TGATTGTGTATGTTTGACTTGCTGTTACTT 17412 36 100.0 30 .................................... GCGTACGAAAATTGGACAACAAACTATTTG 17346 36 100.0 30 .................................... TTACCCTAGTGCTCGCCAAAGTCAAAGGGT 17280 36 100.0 30 .................................... AAAAGGAATTACGGCTGTTTCGTTGTTCTT 17214 36 100.0 30 .................................... CGAAAAAGAGAACAAAATCAAACTTTACAT 17148 36 100.0 30 .................................... TCGAGGATAACTTATTCATCGACGCTGGTA 17082 36 100.0 30 .................................... TGCGTGATGGTGAAGTATTAGTTGGTGATG 17016 36 100.0 30 .................................... GATCGTGCTGAATTTTCTGTGCAAAATAAC 16950 36 100.0 30 .................................... TGCGATAGATCATATCATCCCTGTTTCTAA 16884 36 100.0 30 .................................... TCTTAACGTGCCTAATATTTTAGTGTGCTA 16818 36 100.0 30 .................................... ATTTATCGGTTGAACTATCGCCTACTAAAT 16752 36 100.0 30 .................................... ACAATACCACCCTTAACAATTGTTTGGAAG 16686 36 100.0 30 .................................... TAAAAACGCAACATACATACCTGACTGAAT 16620 36 100.0 30 .................................... TACAAAGCTCATGATTAAGAAGGATGGGCT 16554 36 100.0 30 .................................... AGCCAATGACACAAGAGAGCCAATCAGCAT 16488 36 100.0 30 .................................... ATTTACATTTTGAAATTAGTGACCAACCAT 16422 36 100.0 30 .................................... TTCTTGCATAAATTCTTTCAAGGTGACGTT 16356 36 100.0 30 .................................... CAAAAGCTAATTTACGAAAAAAGCAGCACA 16290 36 100.0 30 .................................... ATACTCGTGAAAGCGAATCAATCAAAGCGT 16224 36 97.2 30 .............................T...... TGCAATGCCTTGAATAACAATTAAAAAGGA 16158 36 100.0 30 .................................... TGAAGTTCTATCGGGAACGACTTTATCATT 16092 36 100.0 30 .................................... ATGAGATTGGCTTACTTTGATTAATATCGG 16026 35 77.8 28 ............A...A....-.....T..TG.T.T TTAATTACATTGTATTCCCCGCACCAGC A [15998] 15962 36 75.0 0 ......TT...A....A...TC.G...G..T..... | C [15929] ========== ====== ====== ====== ==================================== ============================== ================== 65 36 99.1 30 GTTTTAGAGCTGTGTTGTTTCGAATGACTCCAAAAC # Left flank : AATGATAGACAAAATGTTATCAACAATACAAGACTTGATTGACTATGAACTAATAGATAATGAATTAGATCTTGAAAGTGATGAAATTACAATTCAAGAATTGTTTAAAGTTTTAGGTATTCAAATTGAGGTGTTGAGTGATACAATAATCGAAAAAATATTTGAGATTATTCAAGTTTTTAAATATTTATCAAGTAAGAAACTACTTATTTTCATCAATATAGGTGCATATTTGAATAAAGAAAATTTAAGTGAATTTTCAGATTTCGTTTCTTTGAATCAGTTAAAAGTTTTGATGATAGAACCAAGAAAAGTTGCTGGAATCAAACAATATATACTAGACCAAGACTACTTTCTAACCCATGAAATGGTATAATGTAAGAGAGAATTTGTCCTTTGAAAACTAAATAATTATCTTATAACAACAAACGATTCATTCGAAACTGAAGCTTTGCTATGGGCTAATGGCGCGATTACGAAACCTTATTTTTTTCTACGAG # Right flank : TTTTGTTTATAAGACAATTATTCAAAACCGGCATGCCATCTAGTACTGGATGACATGCCGGTTTTTCTATAGCCTTATTCTCTTAATTTTCTAGAAAAATCGCTTTTGTTTCTAAGTAGTCTTCAACACCAAATAGACCGTTTTCGCGACCTAAACCGGATTGTTTGTAGCCACCAAATGGCGCAAGCGGATTACGTTCTGATTTGTTTACAAAGATATTACCAGTTCGTAATTGCTTAGCCACTTTATAAGCATCTTCAGTAGGTCCAACTACTGCACCTGAAAGGCCGTAAATTGAGTCATTTGCAATTTCAATGGCTTCTTCTTCAGTATCGTATGTGATGATGACAAGTACAGGACCAAAAATTTCTTCTTGGGCAATCGTCATATCATTAGTGACATTTGTAAAGACAGTAGGTGTTACAAAATGACCAGTTTCAATGGCTGGTTTTTTATCACCGACTAAAACTTTAGCACCTTCTGCTTTACCTTTTTCAATA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGACTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.30,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //