Array 1 166609-168040 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLGS01000005.1 Escherichia coli strain MOD1-EC5722 MOD1-EC5722_5_length_291347_cov_30.2461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 166609 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 166670 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 166731 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 166792 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 166853 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 166914 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 166975 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 167036 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 167097 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 167158 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 167219 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 167280 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 167341 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 167402 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 167463 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 167524 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 167585 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 167646 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 167707 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 167768 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 167829 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 167890 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 167951 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 168012 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183557-184257 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLGS01000005.1 Escherichia coli strain MOD1-EC5722 MOD1-EC5722_5_length_291347_cov_30.2461, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 183557 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 183618 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 183679 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 183740 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 183801 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 183862 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 183923 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 183984 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 184045 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 184107 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 184168 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 184229 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //