Array 1 149689-151517 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAVK01000012.1 Yersinia pseudotuberculosis strain NCTC10278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 149689 28 100.0 32 ............................ CTAAAAAGAGTGTTGAACTTAATGCTGTAGCA 149749 28 100.0 32 ............................ AACTCTATCTACTAATAGTTGGCCCTCGGTCG 149809 28 100.0 32 ............................ GCAATATCTTTTAGCTCTAATGTAAATTGCTC 149869 28 100.0 32 ............................ TCTTGATTGCCTATCGAGCTATCAAGGTCAAA 149929 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 149989 28 100.0 32 ............................ GTATCAAGGGGCTGATAGACACGACCCTAAAA 150049 28 100.0 33 ............................ CGCCACGGTGAAAGAGGCTTACATCAACGCATT 150110 28 100.0 32 ............................ GCCTCGTCGAGCAGGACATCAACAAACAGCAC 150170 28 100.0 32 ............................ TTACCGCGCCGCCGCAGAATCTCAGCGTAAAT 150230 28 100.0 33 ............................ CTAAACCCAATGTCTGATTATATAATCTAACCC 150291 28 100.0 32 ............................ TTAACAGACTCAATAAACTGTAGAACGTTTTC 150351 28 100.0 31 ............................ TTTACGAGGACTATTTCTGTATGTATATTGA 150410 28 100.0 32 ............................ ATCGAACAAACCAGCTCTGCCGATCATGAAGA 150470 28 100.0 32 ............................ AGATTATTTAATGAGTGTCGGAAATATGAATC 150530 28 100.0 32 ............................ GACAAGCTAGATAAACAACCAAATGAAATATC 150590 28 96.4 32 .................C.......... AATTCAGCCGACCGAGCAAGAACCAAACCAGT 150650 28 96.4 32 .................C.......... TTCTGCAACAGTTCCAGTAGTCGGCGTAACGG 150710 28 96.4 32 .................C.......... ATGCTTGCTCCGCCTTCGCTGCGTCCATGACA 150770 28 96.4 32 .................C.......... AGAATCCGCCGTACACATCACGCTTACTTAAT 150830 28 96.4 32 .................C.......... ACCATATTCATCCAGCGGGACCGCTGATGTTT 150890 28 96.4 32 .................C.......... AGAAATGAATCTGGAATTTATCAAATAGATGG 150950 28 96.4 32 .................C.......... AAAAAAGTTGTCGATATTAATGGAAAAACAAC 151010 28 96.4 32 .................C.......... AATCGTATACATATCAAACTTATTAACTCCAA 151070 28 96.4 32 .................C.......... GCACTGCCGGTATTCGAATCAAGGGAGAGGGT 151130 28 96.4 32 .................C.......... AAGGGATTATTACCAGATACAGGTGAAACCAT 151190 28 92.9 32 A................C.......... ATTTAACATCATATAAATCAATCACAGATAAC 151250 28 96.4 32 .................C.......... CTGCAAGTTCCTTAACACTAATCGAATTGAAT 151310 28 96.4 32 .................C.......... ATTAAAGGTGAGACTGACGGAAAATTAAAAAC 151370 28 96.4 32 .................C.......... AACTTGAAACCTTCCCAGCAGTGACACTGGAT 151430 28 92.9 32 A................C.......... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 151490 27 85.7 0 .................C...CC.-... | T [151516] ========== ====== ====== ====== ============================ ================================= ================== 31 28 97.6 32 GTTCACTGCCGCACAGGTAGCTTAGAAA # Left flank : TTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGTCAGAGCGTATTGCCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAGACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCACCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCGATTCTTGTGACCCTCTTTTTATCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGATTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGTAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 193229-196380 **** Predicted by CRISPRDetect 2.4 *** >NZ_UAVK01000004.1 Yersinia pseudotuberculosis strain NCTC10278, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 193229 28 100.0 32 ............................ AAGTTGGAGGTGTTTGTGGAAATAATGCTTTC 193289 28 96.4 32 A........................... GTAATCAAGAGAGTATATCTAGGGATTTACAA 193349 28 100.0 32 ............................ AATACTCGTAAGCGCGTTATACAAGATTATGG 193409 28 100.0 32 ............................ ACAATCTCAAATTAAAGAAGACACCGCTTTTA 193469 28 100.0 32 ............................ ATGAAGCCCCACCCATTCCAATTAAATAAGGT 193529 28 100.0 32 ............................ TTGATAAATATAGTTAAATGGAAAGTGAAAAC 193589 28 100.0 32 ............................ CTAACTTTAAATAAAGGTGATTTTGTTCTAGT 193649 28 100.0 32 ............................ AATTATTACTGTTGATAAACTTATCGATACTG 193709 28 100.0 32 ............................ TACTCTGAAACTACGGAGTGCGATTATATTTC 193769 28 100.0 32 ............................ CTACTAACCCAGATTATTTAATGAATGACATA 193829 28 100.0 32 ............................ ACTTACATCAAAAACATTTCTAGATGCCCATG 193889 28 100.0 33 ............................ CGGTTGGGCCATCTCGTGCACTGACCTGATAGC 193950 28 100.0 32 ............................ TGCTGCAAACTTAGCTACTTCAGGCAAACATA 194010 28 100.0 32 ............................ ATCCGCATGCATTCGTTGAAGCCACTCAATGC 194070 28 100.0 32 ............................ AAGTAACGAATAGGCGCTATTCCAGCTCCCGC 194130 28 100.0 32 ............................ TTGATATGGTCATGCGGGGTTATCACATTGGC 194190 28 100.0 32 ............................ ATTACCGGCAGTCAATCTGCTGAGGAATAGTT 194250 28 100.0 32 ............................ TAAAAATACTGTAGTAAACAATACTTTTAGTG 194310 28 100.0 33 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGTA 194371 28 100.0 32 ............................ GCCCCAAGTACCACCAATAGACTCCCAATACT 194431 28 100.0 33 ............................ CAGTCTGGCGGCGCATTATCTGGTTTTATGTAT 194492 28 100.0 32 ............................ CTATCAGCTTCGAATACAGAGCGCAGATAGAA 194552 28 100.0 32 ............................ ACTCAGAAATATTTTTATTTGGCCCTATTTTT 194612 28 100.0 32 ............................ AGAGAGTCCGCTACGGCTGGCAATGATTGTAT 194672 28 100.0 32 ............................ TGATAATAAAACAGGTTTTTTGAGTCCATTTG 194732 28 100.0 32 ............................ ACACGATTCAACTACAAAAATGACTCGTTTTA 194792 28 100.0 32 ............................ GTGTAGACGCTTATGCTCAGGTTCTACTAATA 194852 28 100.0 32 ............................ TATCTCGGCTGTGAAGAGGTCGAATACACCGA 194912 28 100.0 32 ............................ GTTAGCGCCACCGGTCTTAATAACGCTACAAC 194972 28 100.0 32 ............................ CCCTCTATGTTTGACTCACTACACTCTGAGGG 195032 28 96.4 32 .C.......................... GTGCTAGCTAATCACGCTAGTAGTGTGCAAGG 195092 28 100.0 33 ............................ TTCTCCGGCTCGGCGGCTAGCTGCCTGATTATT 195153 28 100.0 32 ............................ ATGAAACATGCAATCAGCACGGCAATAGATTT 195213 28 100.0 32 ............................ ACAGGAAAAAGATGAAACCGAGAGGCTTGAGG 195273 28 100.0 32 ............................ TTCACACACTGCAAATGGACCTTATTTCTAAT 195333 28 100.0 32 ............................ ACCGTGCAAGTCTGGCGGGTTGGTTTCGCCAC 195393 28 100.0 32 ............................ GTTTTAATGTGAGAAATAGAGCGCATCCACGC 195453 28 100.0 32 ............................ AATCTGGATAGCGCATATTTATCCTGTTTATT 195513 28 100.0 32 ............................ ATGGTGTCATCATCAATAATAAAACCAAATGA 195573 28 100.0 32 ............................ TTTATTAATTGAGTTTGCGCGTATACCCATTT 195633 28 100.0 32 ............................ CATTAATAGAGGTATAAAAGGGATCATATTAT 195693 28 100.0 32 ............................ ATAGACTCCCAATACTCACCCAACAATTTAAA 195753 28 100.0 32 ............................ ATTATAATAATCGTGATTGTCTTTAAACGCTA 195813 28 100.0 32 ............................ AGTGTTCTGTATTAATTTGCCTTCACATCTAA 195873 28 100.0 32 ............................ AAGTTAAACAGTATGTGGACGATGAAATAAGT 195933 28 100.0 32 ............................ AATTGAAATAATGGTTACTGGCAACGGGCAAG 195993 28 100.0 32 ............................ ATTAAAGAATAAATTGTATTCTAAATAGTTGT 196053 28 100.0 32 ............................ TACAGGAGGTGATCTAAATCTCAATCCGGTAG 196113 28 100.0 32 ............................ ACGTAAACGAGAATATAGACACCTTCCTGATC 196173 28 100.0 32 ............................ GCTAATCATGCTGCTAATGGTGCCGCGCGAGA 196233 28 100.0 32 ............................ ACTAATAGTTGGCCCGCTGTAGGCTCGTCCGC 196293 28 100.0 32 ............................ ATCCGGCAGCGCATCAAACTCAAGAACATCGC 196353 27 85.7 0 ...................-A.A.C... | T [196377] ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGTTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCGAGGGGAGAGACATATTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGGCTATGCGCTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGAATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //