Array 1 24559-24722 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014687.1 Acetobacter persici strain TMW2.1084 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 24559 32 100.0 34 ................................ AGCCACAGATGCCGTTGGGCAGAAGTCGCCTTTC 24625 32 96.9 34 ..........A..................... TGTTCGTCCACGAAAATAAGCCGGTTGGTGTATG 24691 32 90.6 0 ...........................A.G.T | ========== ====== ====== ====== ================================ ================================== ================== 3 32 95.8 34 GTCGCCTCCCGTGCGGGGGCGTGGATAGAAAC # Left flank : TATCACCTGCGGCAAACTCTGGTGTTTCTGGACACATTTGTGCTGAACAAGCCGGAGGTGATGATCGGGCAGGCCATGAGCAAGTTTGACGCAGAGAACCTGCGCCTGACAGACGAGCCAACCCGTGCCTACCTCACACGCCAGATTGCAGCCCTCGGCGCGCTGGCAAGGCTGGTCTCGCCGCATACGCCAGATGCGGGCTAAACTGGCCGCGTCAGGTGGGTTCAGGAAAGCTAGGAGATAAAGAGCTTTCCTATGACTGGGTGCCATCATCTTTCTGATGGATGATGGCGCAGAGGGAGTTCACCCCTAAAGAGGCGTCTGCGCGAACCTCTATCGGTTGTAAAAAACCGGGGAGGATCGCGGACGGCTTAAGTGGCTGTTTTGGAATGAAAAAATTTTCATACCCCGAGATCGGACAGCCAGAAAAGCCGCCTGAGTATCAGGTTCGCGCAAAACCCCCGATTTTTCTTGTGCGCCTCAGGTGATATGCTCACGCT # Right flank : TAGAAGAGAGCGCGCTTTTTTGCGTCCCTGTGACGTTCTCGGGGCGCAGCAGGCTGGGTGCAGCGTGGCATCCAGCCTGAGTGTTTTCAGGAAGTTAGTGAGATGCGGGCTGAGGCAGAGGTGTGCCTGTTTCAGGGTCAAGCAGAAGAGGAGTGAGGCGCGGAGGGCTGGTGAAATCAAACAGGTCGGTCAGATCATGCGCGACAGTATCAAAGGAGCCGCCGCCAAGGCGCTGGCCGTTCAGCCAGTTATCTTCGATAAAGCGCGGGATTGAGCTTTGCGTGATCTGAACATGGCTCACAGCGTTGGTGCGCGCCCATGGGGAGATCAGAATAAACGGGATGCGGGTGCCCGGTCCGCAGCGCCCGTTGACAGGCTTGCCGCCCACCCCGGCAAAAGCTGTGCCCGTGCCACAACGCCCCGGAGCATTCAGCTGATCAACTTCCGGATCAAATGACCCATGCTGAGGCGGGATAAAAGCGTGGTCATACCAGCCGTCT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCTCCCGTGCGGGGGCGTGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCTCCCGCGCGGAGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.60,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 336571-338215 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014688.1 Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 336571 29 100.0 32 ............................. TCCCACCATGCGATTTTGCATGCCCCGAATCT 336632 29 100.0 32 ............................. CCGGGCCAGTCCTGAAATAAAAAAACCGCCAG 336693 29 100.0 32 ............................. GGGGAGAGATGGAGGGCGGAGCGCAGCAGCTC 336754 29 100.0 32 ............................. CGCATGGTACCGGCAGGCCAGCCCGCAACAGG 336815 29 100.0 32 ............................. CTACCGGTGAACTTCCTCCTGTTCCGCTCTGG 336876 29 100.0 32 ............................. AAAAGCCGTTCAGGGTGCGCCAACACCCCAAA 336937 29 100.0 32 ............................. GGGGCCGCAGGGAACCCAGGAGATCCAGACGT 336998 29 89.7 33 .......T................T...A GGACTGGGCCTCAATCGTGAAGCCAAGGCTGCG 337060 29 58.6 31 TC.......A.AC.A.....T.CCCC..T TCCTCTCTGTGATAGGTCCTGGAGCCACAGG 337120 29 62.1 32 .G...TG.....CA..A..T....TATT. CCTTGAGAGCACGCGAAACCTCTGGCACAACA 337181 29 82.8 32 C.A.........CA...........A... TCCCGGACTGACACCTACCGGAAACTAGCTAA 337242 29 82.8 32 T..........AC.C.........T.... CAGGCTATTACGGGGCTGGCCTCCTATCAACG 337303 29 82.8 21 .........A....C......G...TT.. GGCGCAGAAGCTCTGAAATCG Deletion [337353] 337353 29 75.9 135 CA.....T.AG.......A......T... TCTGGGCTGGACATTCGGAGGTCTGCTCCCCGCTCAAGCGGGGATGCTCCATGGAAAGCGCATTGGACTTCAGTGAGTTCCTTGCTTGTGCAGGGATTGCCCGAGCGCAGCCCTTGATTTCCATCCGATAGCGAT 337517 29 69.0 91 .C.......A......A.A..T...CGTT GCCAGATTTTTGAAGGACAAAAACGATAGATCAATTTGGTAGAATCTTTGAAATCTGAATAATCATTGTAGAACAACAACTTCCGAGAAGA C [337533] 337638 29 82.8 32 .A.......AA.C............A... CCCTCCGCGTCTGGGTTGCTGCACAGTCCTGC 337699 29 82.8 32 .A.......AA.C............A... GATAGGACCCACTATGCCCGCTACGCGAGGCT 337760 29 82.8 32 .A.......AA.C............A... CAGCTTCTTCGTGCCCGGTTTCTTGCCGCCGT 337821 29 79.3 32 .A.......AA.C...........GA... CGCCAGTCTTTAGGTGCAGGATTCGCAATATC 337882 29 93.1 32 .........A....C.............. GGAAAAATAATAATTTCCATTTTCTATGGGAA 337943 29 96.6 32 ............C................ GTGCCAATCGCAATTTGTCTTGCCGTAGCTGC 338004 29 100.0 32 ............................. GGGTGGCTGGTTGCTACGCTGGCGTTTTGAAG 338065 29 86.2 32 .C.......A..C............T... AGATGGGGAAGCCTTTGACCGAATATACCGAC 338126 29 75.9 32 A.A......A.AC.C..........A... TTGAATGCAACCCTCAAGAGATATTGTGCAAT 338187 29 82.8 0 .........AT.CC............T.. | ========== ====== ====== ====== ============================= ======================================================================================================================================= ================== 25 29 86.6 38 GTGTTCCCCGCGTGTGTGGGGATGAGCCG # Left flank : GAATGTTTCCCACACGTGTGGGGATTCCCCTCAGACTTAGCGGATCTCGGCTGACATTCCCCACTTTTGCAGGAATTAAACGCTTGGCACAAACTAGGAGGAGACCTTCCAATCCTCATCGCTCATGACCCGGATGGCGATCCCTTGCTTCATATATTTTTCGGCCTGTCCTTTTTTTGCCGCCAGCATTTTCTCCACAGACGAGGATAGTTGTAGCCTTTGACAGACTGTCTGAGGTTTTTGCACCCAGAGCCTCAGCTTTTTACGGAGATCGGGGCGAGAGCCGCCGTCCGCCATCGAGTTCTTGCGCCCTTCAGTGGGTTCCTTTCTTGTGCAGGGATTGCCCGAGCGTAGACCTTGATTTCCCTCCGATCGCGATGCGTTAGGCACATGTGCTGAGGTTGACGTTGCCAGATTTTTGAAGGACAAAAGCGGTAGATCAATTTGGTAGAATCTTTGAAATCTGAATAATCATTCTAGAACAGTGACTTCCGCGAAGA # Right flank : GTTTGCGATCTGTGAGCGCCCACGAAAGTTAGGGGTCCCCGTAATTGCGGGGATTAAACGCCTCAGACCAACTAGGAGGCGAAGACCTCCCAATCCGCCTCACTCATGATCTGGATGGCAACCCCTTGCTTCATATACTTTTCGGCCTGCCCTTTTTTGCTACCGGCATTTTCTCCGCAGACAAGGATTGTCGTAGCCTTTGACAGATTGTCTGAGGTTTTTGCTCCCAGAGCCTCAGCTTTTTTGCGGAGATCCGGGCGGGAGCCGCTGACCAGCTTCCCCGTGAAAACGACTGTTTCGCCAGTAAGTTTACCTTCAACCTCATCCGGCAAGTCCTGGACCGTGATCTGCTCCAGCAACTTGTGCATGGCGCTGAGATTGTCTGGTGTGGAAAGCCATGTGCTCATATTTCCGGTAAGAGTGTCCCCAAATTCCGGAAGTGCTTTAAGCTGGTCGATGGTCGCAGGGTTTTTGCTGGCGATATTCTCGATATCATCAAG # Questionable array : NO Score: 4.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.33, 5:0, 6:0.25, 7:-0.59, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGTGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 490540-489596 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014688.1 Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 490539 29 100.0 32 ............................. TGCTGTCTATCTTCAACCCCAATCGGACGGGC 490478 29 100.0 32 ............................. TAGATTGCCTTACCCGATGGATCTGTATATCC 490417 29 100.0 32 ............................. GCCCACCCTGACCCCGCAGTTCGTCAAGCCGT 490356 29 100.0 32 ............................. AAATCGAGAACGGCATTGATGCTGCGCTCCTG 490295 29 100.0 32 ............................. GCCTATGCTATTAAATGGCTGCTTGCGTTTGC 490234 29 96.6 32 ............................A CGCTAGCTGGTCAGAGGTGGGCTACCGCCCCC 490173 29 96.6 32 ......A...................... TAGTCGTTTTGAGAGATCATCTAAATCAACTC 490112 29 96.6 32 .........................T... CGCGGGCAGCATCGGCCCCAGAAGTCAGCACC 490051 29 96.6 32 .....A....................... CTGTTTGTAACTTGAAATATCGAGAGTTTATA 489990 29 100.0 32 ............................. CTACGGACACGCAGACTTTTGGACTCGGCTTG 489929 29 100.0 32 ............................. AGGAAGTGTGGGCCGGAGCCAGAGAGCTCTAC 489868 29 100.0 32 ............................. GTGAAAATGGGCCGGGCAACCATGATCAAAAC 489807 29 100.0 32 ............................. GTGAAAATGGGCCGGGCAACCATGATCAAAAC 489746 29 100.0 32 ............................. CATGAATGGTGAAGTTCAGGCTGTATTTCGTG 489685 29 96.6 32 ...............A............. TTAGGTTGCTCATGTATGGGTAGCATAACTGG 489624 29 86.2 0 .......................T..ATC | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 GTGTTCCCCACGCACGTGGGGATGAGCCG # Left flank : CCTCCAGCACGGCGCAGTGCGCCAGCCAGTGGGTCAAGGCCACTGGCCCGGTGGCGGTCATAGAGTGGGATGGTGAGATCTTTGAGCGCCGTACCGGCATCCCGGCGCAGAGTCTGGCAGGCACTACGGACGATTGCTCCATACCCCAGCCGCCAGGCGATCAGCACGGCGCGACTTTCTGTCGGAATGCTGATCGTCTGCATGGGGAGGGCATAATATGAAGAAACCATTGCAGCGACCCGACAAAAACTATTCTATCCTTGCCCCATCAACCCTGTATGCAGGAGGGGCTTTCTTTTTTGATTGTCCGGCGCTCAGGACCGATGATGGCTTTAAACTTCTGGTGTTTTCATGATCAGGCTTGGCGTGTTTAGACACAGAATGCACGAAGCGCTATCTGTCGCTGGTTGAGCGATGGACCACAAGTTTTGTGTGTGGTAAAAATCGGTGAGATCTTTAAGAAAAGAATATGCCAATGATATCAACTTCTTCCAGGAAGA # Right flank : AGCTAGGTAGAGATTTTTCTCAAACATTACGTCGAGAATCTCTACCCTCCAGTGCTTGAATGGCGTAATCACGCTTTAAGCTTGGTCCAGATCCACCACCTCCGGATAGCCACTCTTTGAAAGTCCCGTTCATTTGGCTGGGGTGTGTGATGTGCAGCCAGATCACCCCGCAGCCCTATATGCAACAGGGTTTATGTCAGAGAAGGTTGATGGGTTGAGTGACCTTATGAGCGATCTGCATGACTTGATGTAAGCATCGGAGGTTCCGAGCAGGACAGCCACTTTTACGCTAGACGGCAGTGATCTGAGATAGCGTTCAGCGCAGGTCCTGACAATCTCCTTTGCTGGCTCCCGGAAAGCTTGGGTCATGATCTGGCCAGTGCATTCATACTTCCCGGTCTTACGGTTTAGCCTCGACAGGCTGCATCGCACCAGCGAGCCGAAAGCAAAGTTTTTTTCATCACCCTCAAACCGCAGGTCGAAGCTTTCTGACGTATCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCACGTGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCAGGTGGGGATGAGCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 506741-507074 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP014688.1 Acetobacter persici strain TMW2.1084 plasmid pAC1084_1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 506741 29 100.0 32 ............................. AAAGAGAAAAGAATCTAATCCCCCTGTTGTCC 506802 29 100.0 32 ............................. TGTCAGTCCGTGACATGCCGGTGCGCTGTAAC 506863 29 100.0 32 ............................. GTATCATACGGTGTCTATCAGATAGTGACCTC 506924 29 100.0 32 ............................. GCCCGCGAAGCCGCCGTGTTTTGGGCGACCGA 506985 29 96.6 32 ..............T.............. TTATGGGGAGACAGGTCTAACGGGCTAGGGAA 507046 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCTCGCGCGTGGGGATGAACCG # Left flank : TTCAAAATGACTGAGTTTTTTAAGAGTAACATAACCTCCGATCTGAATGTCGGATGGTAGTGTCCGTATAGGCGTATTACCTATCAATCTGAGGTAGCCAGCCGAAAAATTCTTGGGAAAAGATGTTAACGATGAACAGTTTGCGAAGGCAATGGTAAGGCCTTTCAAATTCAGTCCGTCCGGGAGTTCTCTCAGTTCAGGATCTGTAATCCCATCATACGTCCCATATCCTTTCCCTCGAAACTGTTGAGCAAAATCATAGGGTGTAGGGGCAATTGATGTCATGACATGTGATCCCAAAATAGACGACTGATGTGATAATCTGTTCGATAGTGATGCAAGGAACAACAGGGGCGAAGCCGCCAGATCCTGTGATGATATGATGCGGTTGGGTAACGGGTTGACGGTATTGGCATTTTGAAGGACAAAGGGGTCCCATTAATCTTGGTGGATTTTTCTGCCGTGGAAATAATTTTGTGGATCAATAACTTGCACAAAGG # Right flank : GGAACCGGAAACGATCAGAGCGGAGCTTCTGGCGTATTCCCCACGTGCGTGGGGGCACTTGGATTCTGCGGCTTAAAACTTATTTTCAGAGTTCCCGAATGCATGGGGATGAAACGCTTCGACAGGCAAGGAATTGCCAGATTCGCCGTAAAGTCGGTTCCTTCAGACTCTGTTCTAGCTTAGCTCTAGTGCCTTGCGTGCAGGAGAGATAGCGTTCCCATGCGAATACGGCTCTCCTGCAAACGGGGGCATCAACCCGTTATGCAGGGGTGCCAAAATTGAACCAACAAGGATTGTTATCCATGGCACAAGCAGAGGCTACAAACATCAACCATATGCTCAATTCGGCATTGGAAAAATTCCAGTGCCCCGAGGATGTGAAAGAGGCAGGTCCGGGATCTTACCAGTTCTCCATGGATGTCGATGTTCATGATCCTGAGGTTTTTTACAAGGCGGCAATCGCCCACTACGTGAAGGAAAATTTGCCCGCTGATCGGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCTCGCGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //