Array 1 32470-31343 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLQ01000005.1 Escherichia coli strain G8 NODE_5_length_142076_cov_138.956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 32469 29 96.6 32 ...........................T. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 32408 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 32347 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 32286 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 32225 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 32164 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 32103 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 32042 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 31981 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 31920 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 31859 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 31798 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 31737 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 31676 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 31615 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 31554 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 31493 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 31432 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 31371 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58538-58020 **** Predicted by CRISPRDetect 2.4 *** >NZ_VDLQ01000005.1 Escherichia coli strain G8 NODE_5_length_142076_cov_138.956, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58537 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 58476 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 58415 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 58354 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 58293 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 58232 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 58170 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 58109 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 58048 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //