Array 1 15508-13494 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCES01000039.1 Streptococcus ruminantium strain MO402, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15507 36 100.0 30 .................................... AAATGACCTTAAGGTGTTTGATATTGATAA 15441 36 100.0 30 .................................... ATTGAGGTGTCAAGGTGTGCTCGCTTGATG 15375 36 100.0 30 .................................... TTTATATGGTTTTTCAGGGAACTTCAAGCA 15309 36 100.0 30 .................................... CTATTCATTCAAAGCCTTTTCACCGTTTTA 15243 36 100.0 30 .................................... TGAAGTTGGCTCAATCCTACTTCCAAAGTC 15177 36 100.0 30 .................................... ACTATACAAACCGTTTGACCTTGAAAACAT 15111 36 100.0 30 .................................... TGATATTAAGAACGATAGCACGTCTCAGGG 15045 36 100.0 30 .................................... AATTGCTGAAACAATGTTTTAATGGCTTTG 14979 36 100.0 29 .................................... TTTTAAAAAGGTAAATCAACGTCATCTGT 14914 36 100.0 30 .................................... CGAGGGGTACCTCGTTTTTTATTAGTGTTA 14848 36 100.0 30 .................................... TTTTGATACATTATGCGTAGCCAAAGAACA 14782 36 100.0 30 .................................... CGAAGAATTCTGTCCAAGCATCATTTACCG 14716 36 100.0 30 .................................... GAGGGAGACGAAGATATCGAGGAAGGAGAA 14650 36 100.0 30 .................................... TTGAATATTGAGATACAGAAACCCTGTTTC 14584 36 100.0 30 .................................... TTGAAAGAACATCAGAGCTAAATGTGTTTG 14518 36 100.0 30 .................................... TTGGACTTCATTCAACTTATCCTCATCCCC 14452 36 100.0 30 .................................... TACAATATTGTAATACTGTTTGTGATGGCT 14386 36 100.0 30 .................................... CACATTTGACAAATTTTGTCAAATGTTTTA 14320 36 100.0 30 .................................... CAAAAGCGTGTTATCCATGAAGAATATATT 14254 36 100.0 29 .................................... AAAATCAGTTTTAGAGCTCAAATCACCGT 14189 36 100.0 30 .................................... TTGAATATTGAGACACAGAAACTTTATTTC 14123 36 100.0 30 .................................... CAACGTGCCCGTTTTCTATAAGCTTTCGCT 14057 36 100.0 30 .................................... CAGAAAACACAATTGTAGGCTTTTTGTTAG 13991 36 100.0 30 .................................... CGCGCATTTAAAGTCTTGTTGGATGACTTT 13925 36 100.0 30 .................................... AACAAGACTATGAAACATAATTGACTACCT 13859 36 100.0 30 .................................... TAGCTATCCGGACCGTTACGGTTTTCCATT 13793 36 100.0 30 .................................... TGGGCTTCTGTCTGAGGACGAACTAGAAAA 13727 36 97.2 30 ......A............................. ATTTTAAAAAGGTAATTCGTTATCATCCGT 13661 36 100.0 30 .................................... AACGTGATTTTCAGAAGAATCTGATTAAGG 13595 36 100.0 30 .................................... TTCATCAATAGGACGTGGATATACTGACTA 13529 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAGTTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATGTTGATAGGGATTATAATTGGAATAAAGAGAGTATAAAAATCATTTGAG # Right flank : AATTTTGCGGTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGTTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGCAATGTAAGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //