Array 1 2374888-2379714 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049205.1 Xanthomonas oryzae pv. oryzae strain K1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2374888 31 100.0 35 ............................... AAATGATTGAGCATCAAACATCTATGTTTGATAGG 2374954 31 100.0 37 ............................... GCCGTCACCTTTGGTGTAGCTATGCGGTGAAACGACG 2375022 31 100.0 35 ............................... ATGATCGAACGGCCTACCGGCGCGCCCTCGCCTAC 2375088 31 100.0 34 ............................... CTCAGGGCTATCGCCTGTCAGGTGCAATCAAAAC 2375153 31 100.0 35 ............................... TCAGACACGGACACAGAGTCATTGAACGTCATGTA 2375219 31 100.0 34 ............................... TCCCAGCACGCCTTAACCGCATGGTCTTTGCAGC 2375284 31 100.0 35 ............................... GGGGTTCCTCGGCAAGGTCGGCAGCTGGATCGGCG 2375350 31 100.0 34 ............................... CACACGAGCGCGTCGAAGGCGGCGTTGTGCGCGA 2375415 31 100.0 34 ............................... GAGGACCGGCGTGCAGCATCGGTCAACATTGGCG 2375480 31 100.0 35 ............................... TCGATCCGGCCGTCGGCGACATCGGCTTGGCGACC 2375546 31 100.0 34 ............................... TTTGCAAATGAATCATATTGATCATCAGTCAGGA 2375611 31 100.0 34 ............................... ATCTACAAATACCGGAAGGAAAAGAAACGTGTCC 2375676 31 100.0 34 ............................... GTGTCCCACTGCGCCGACCACTTCGCGCCGCCGC 2375741 31 100.0 35 ............................... TATTCCGCCCGACCAATCGATCCGGAGGTTCGGAA 2375807 31 100.0 35 ............................... TTGGCCTACCAGGCTGCGGCGAAGTGGCCGCTGAG 2375873 31 100.0 36 ............................... CAGAGCCTACGGGGCTGGGGCAGCATCAATTGCAGC 2375940 31 100.0 33 ............................... TGCTGTCAGATCCGCAGTTACTGTATAGACCTG 2376004 31 100.0 35 ............................... CGTCAGCATCTGTGACAGTAGCAATGACATCCCAG 2376070 31 100.0 34 ............................... CCTCACCCCGCCGGATGCACGTCTGACCGTCCGT 2376135 31 100.0 35 ............................... CTCTGGGAGACGGCGGATATGGAGATGTGGGAAAG 2376201 31 100.0 34 ............................... CCTTTCAACTGGGCAAGTCCTAAGCAGAGGTCAG 2376266 31 100.0 36 ............................... TCCTTGCGGGCAGTAAATACATCTGGCCGTCTATCA 2376333 31 100.0 36 ............................... TCCGGGTTCAAGAGTTTGTCTACAAGTACCGGAAGG 2376400 31 100.0 34 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGA 2376465 31 100.0 34 ............................... AGTAGCCAGTGAAGTCTCCCAGATGATCCCACAA 2376530 31 100.0 34 ............................... CGATGATGTTGTACAAGAATGGAATATCCTTAGC 2376595 31 100.0 33 ............................... ATACCACATGAGTCTGTATTAGATGCAATGGAG 2376659 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 2376724 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 2376790 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 2376856 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 2376923 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 2376991 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 2377056 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 2377122 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 2377187 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 2377252 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 2377317 31 100.0 36 ............................... CACACCGACGGCGGCGGCGTGCGTACGTTGCGCCTC 2377384 31 100.0 35 ............................... GGCACGGGGACATCGGCGGTGCCGTCAGACGCTAG 2377450 31 100.0 36 ............................... AACGCGTTGTAAGCCTCGTGCCCGTGCTGCGTGATG 2377517 31 100.0 35 ............................... CGGCAATCGACGGCGATCTAGGCCCCGACGATTTA 2377583 31 100.0 36 ............................... TTGACGGTGACGGTGTACGCGCCACCGGTGTTATTG 2377650 31 100.0 37 ............................... AGCGACGCAATTGCACTACTGCTCGAAGAAGGCTGTA 2377718 31 100.0 34 ............................... GCCAAGGGCTGGACGAACCGGCGGATTCTGGCGG 2377783 31 100.0 34 ............................... TGGCTCCGTTGGGTGGTTGGTAAAGCCATCGGAG 2377848 31 100.0 34 ............................... CAATGGTTAGTGCACCTGGTCCTCGGCAACGCTC 2377913 31 100.0 34 ............................... GCGCAAAACGATAGCGCCAAGGTCGAAATCCCGG 2377978 31 100.0 35 ............................... GCTGCTCGCCGAAAGCAAGCGTCGCTAATAGGAAC 2378044 31 100.0 34 ............................... GTTCGTACGCGCCACGGCGTTCGGAACAAACTCT 2378109 31 100.0 35 ............................... TTCGGCTAATGGTGGTGAGGGCAGGGCGGCGCTTC 2378175 31 100.0 35 ............................... GAGGCGCAATTCGACAATGGGCGTATGCAGGACTG 2378241 31 100.0 35 ............................... GACAACTCCACCACGATCACTGGACAAGCCGGCCG 2378307 31 100.0 34 ............................... GCGCTTGCCCAAGCCTGACATTTCGCACAACTCC 2378372 31 100.0 34 ............................... CACGCGCTATAGCGGCCGTAGTTGCTACGTCCGG 2378437 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 2378503 31 100.0 34 ............................... CTGGCGCAGCACGCACGGTGGACAAGAGGTGGGC 2378568 31 100.0 36 ............................... TCTTGCCCGTAGTGGCGGTCTGGAAGGTGCTCTAAG 2378635 31 100.0 35 ............................... ATTTCATGAGCGCGCATGCGCAGATCAGCAAGCAA 2378701 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 2378768 31 100.0 33 ............................... GCCATCGATGCAGCAGGCCAGGACGTAGCGCCG 2378832 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 2378898 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 2378963 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 2379028 31 100.0 35 ............................... AAGCTGACTAGCTCGAAGAGCCAAGCGGCGATGAC 2379094 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 2379160 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 2379224 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 2379291 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 2379356 31 100.0 35 ............................... TTTGCGACGGTGTTCAACGGCGAGCAGATTGACGG 2379422 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 2379487 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 2379554 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 2379619 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCAGCGCAGGCTGGCC 2379684 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 74 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGGG # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //