Array 1 952920-954106 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011396.1 Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391 isolate CFSAN000736 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 952920 29 100.0 32 ............................. AATACTATCCTGCAATGCGCTACCACGTTACT 952981 29 100.0 32 ............................. TGATAACGCATGGGAGTCCAGATTACAAATTC 953042 29 100.0 32 ............................. TGCTGGATACACGCGTTTCAATGGTCAGAGTT 953103 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 953164 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 953225 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 953286 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 953347 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCAGACCGATCGACTA 953408 29 100.0 32 ............................. TCCGCGGTGATAGTATGCGGGGAACTATAGAC 953469 29 100.0 32 ............................. TGCTGAATCTTTGCGAGTGGGATGATGGCACT 953530 29 96.6 32 .....T....................... CCGCTACGATCTATTCGAATCATAGTGGTGCG 953591 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 953652 29 100.0 32 ............................. TCCTTTTATTCTAATGGGTTAGATAGGGTAGA 953713 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953774 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953835 29 100.0 32 ............................. AAAACTGCACCGCCGCTGCCACTGAGTTTGCT 953896 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 953957 29 100.0 32 ............................. GGCGTGGTGTATATCGGTCTTGATGCGTTGTC 954018 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 954079 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGAAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970277-971956 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP011396.1 Salmonella enterica subsp. enterica serovar Thompson str. ATCC 8391 isolate CFSAN000736 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 970277 29 100.0 32 ............................. AGTTTATTACCCCGCCATTTTTCAGTCGTCGC 970338 29 100.0 32 ............................. CGGTACGACGTAAACTGCGCGCCCGGACTGAT 970399 29 100.0 32 ............................. GAGGCTATCGGGACACAGGCAAACGTCGTGGC 970460 29 100.0 32 ............................. TTTGGTTGATGCGTCAAACCTCGCTAACTTTG 970521 29 100.0 32 ............................. GCGGAATAATAAATGGAGTGCCATTTGTAGCA 970582 29 100.0 32 ............................. GAGCGATGTTGGCATGGCATTGGTTTACTGTA 970643 29 100.0 32 ............................. TAGAGCCGTGTGTTAGCAGATAATCAGTATTA 970704 29 100.0 32 ............................. AAGCCGGACCACATTTTTCTTGCCGAACTCAC 970765 29 100.0 32 ............................. GCTGTTGCCGACGTCGGGCTTAAACACCACTG 970826 29 100.0 32 ............................. GACGCTTCACCTGCATCAAATTCTCCTCCAGT 970887 29 100.0 32 ............................. GCGGGCAACAATTTTAGAGGGGCTGCATTCGC 970948 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 971010 29 100.0 33 ............................. CGCACGCGGGTTGCGTAACGGATATACGACAGC 971072 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 971133 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 971194 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 971255 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 971316 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 971377 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 971438 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 971499 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 971560 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 971622 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 971683 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 971744 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 971805 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 971866 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 971927 29 93.1 0 A..............A............. | A [971953] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //