Array 1 8438-12483 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVFT01000053.1 Xanthomonas oryzae pv. oryzicola strain BAI20 contig_53, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 8438 31 100.0 34 ............................... ACGATGATGGAGGAGATTGAGCCAGATTATAAAG 8503 31 100.0 34 ............................... CAGATCGTCTCCCCCAACGGGGGAGCACGGCTGG 8568 31 100.0 35 ............................... AGGAACATCTCGGCAGCTTCCTTGGCAGCAGGCAG 8634 31 100.0 35 ............................... CGCTGGCGGCTTAAGGAGTTGCAGGATCACATGCG 8700 31 100.0 34 ............................... ATGCCGCCGGCCACCAGGGTGGTGGGTTGAAGCA 8765 31 100.0 37 ............................... TTGCATGCTCGCATGCAATGAATTATGCATGCGGACA 8833 31 100.0 33 ............................... TCGCATGGTCTGCGACATCGGCATGGGTAATGT 8897 31 100.0 37 ............................... TGTCGCCGAGCAGTCCAGGCAACCTGCCCCACAGGTC 8965 31 100.0 35 ............................... ACTGGACCCGCAGAATGATCCCGCTCCGGAAGACC 9031 31 100.0 36 ............................... ATCAACGTGCTTGCCGACCACTCGGAAGGACTACGC 9098 31 100.0 35 ............................... TGGCCTCGCGCGGAGTTCCCTCGCCGTGGTCCAGA 9164 31 100.0 34 ............................... GGTTCGAGCGTGTGTTGCAGGACGGAGGTAACCC 9229 31 100.0 34 ............................... GTACCCTTCCAAGAATGGCGGTCAACCTGGGATA 9294 31 100.0 35 ............................... AACAACGTCACGGTCGAACAATACACCCTTGACCA 9360 31 100.0 35 ............................... ATCAACGCCATCGCGGCATTGGCCTCAATCTCCAA 9426 31 100.0 34 ............................... TTCTCCGCGATATTCGCATTCGCGGCCCGACTGC 9491 31 100.0 35 ............................... CTGTGCACTGGGCGCGGTCGCCCACTTTCGCGGAA 9557 31 100.0 35 ............................... AGGCCCTCCACCTACCGTCATACCCACGTGCACTG 9623 31 100.0 34 ............................... TGGTACCGGCGGAAGTCCGTCTGCCACAGTAACC 9688 31 100.0 35 ............................... ATCACGTCAAGCGGTGCGCCGAACACCTGCACTTT 9754 31 100.0 33 ............................... GTCAACAATGGATGGGGAGGCCACGCGTTATGC 9818 31 100.0 36 ............................... GGTGATCTGCAAGTTCGTCGACGCAGCCCACGCCAG 9885 31 100.0 35 ............................... CTGTCGACCGGTGGTACCTGGCATGGGGTTATCCT 9951 31 100.0 34 ............................... ACGTACAACGTAGGGGCGGGCAACTGGCGGAGCA 10016 31 100.0 36 ............................... GTATCATCATACGGCGGGGCAATAATCACCACACTT 10083 31 100.0 36 ............................... ATTAACGGGACATGGCCTGAAGATCAGTTAGATCAC 10150 31 100.0 36 ............................... TCAACATGGGTACCCAACTCAAAGTAGCCCACCAGT 10217 31 100.0 34 ............................... TTTGGTGCGCGGCTGGCGTCCAAGCGCAATGACA 10282 31 100.0 36 ............................... AACCTCTACCGCGACAATCGGAACATCGGCGCCCTC 10349 31 100.0 34 ............................... AGGTCCAACGCGGCGGCAGTCCCCACGCTCAACA 10414 31 100.0 37 ............................... ATAGGTGTCTGCAAAGCGCCCGCGCCAACTCGCGCAG 10482 31 100.0 36 ............................... TGAATAAACCCTGGTTCGGTGAAATGGTCCGCGCCG 10549 31 100.0 33 ............................... CTGAAATGGCCTTTCTGCGTTCCAATGCAATAC 10613 31 100.0 35 ............................... ACCGTGATGCCCCTCTTGTCCATTGCTGGTGCAAT 10679 31 100.0 33 ............................... TTGCCTAGGTTGACCTCACGGTTTTTCTGCCGT 10743 31 100.0 36 ............................... CAAGCATGCCCCCAACTCTTCCTCTGCTGGCAGCAC 10810 31 100.0 36 ............................... TCTGTGTACATCTGCACAAAGGTCTCCCGAATGATG 10877 31 100.0 35 ............................... TGGAGGTGACGCCAACCACGCCACCTCCCGTAGCA 10943 31 100.0 34 ............................... CAGCGTGTTGCCATCCATGGTGCCTTGGCCCAAC 11008 31 100.0 35 ............................... CCGCGAGACGTTGATGACGGTTTCGACGTTCGACT 11074 31 100.0 35 ............................... CTTAAGTCCTGCGCCAACCACTTGTCACACTGGGG 11140 31 100.0 36 ............................... GATTACCTGGAGCCCAAGCTATTCCACAGCCTCAGC 11207 31 100.0 34 ............................... TTGGCCCAGGCCGAGAGCTATATTGCGGGCAACA 11272 31 100.0 34 ............................... AAGGTACTGCTTCGGCGGCGCCCGAAGGGTGCTG 11337 31 100.0 32 ............................... TGGTTATTATAAACCTGTAGTCCGGCTGGCAT 11400 31 100.0 35 ............................... CTGATCCTCAACTGGCGCAGGTCCGCCCAGTTTGT 11466 31 100.0 36 ............................... ACCGTGGTCATCTTGGGCTTGCTGTGGTCATCCACC 11533 31 100.0 35 ............................... TCATTTGCCCATTCACTGTCATCAAATGATGACTC 11599 31 100.0 34 ............................... ATACTCAAGGTCAAGTCTGTAATACACTGGGCAA 11664 31 100.0 35 ............................... CTTCTAAGAGCTTTAAGAGCGAAAGCGAAGCTTGA 11730 31 100.0 34 ............................... AGGTTAGTACACCTGTAGGGATGGCCTGTGGGTG 11795 31 100.0 34 ............................... TCACCTGCCCATTCACTGTCATCAAATGATGACT 11860 31 100.0 36 ............................... CTCAGCAAACACGCAAACGTAGAGGTGGGATTAAAC 11927 31 100.0 35 ............................... CATATGCAAAACGATGATGCCCCACGCCAAGGTAG 11993 31 100.0 35 ............................... TAGCCCCTGCGGCATATCATGACCCCCGTGGAGGA 12059 31 100.0 33 ............................... AGTAAACGCCTAGGCGGACCCTGAGCGTGCCGT 12123 31 100.0 35 ............................... ATGGTCTGTTCCTCCGGTTGATGTCCATAGATTGC 12189 31 100.0 36 ............................... CAAAATTCGTCACTCTCCGGCACAACAGACACCTGC 12256 31 100.0 35 ............................... TCACCTGCCCATTCACTGTCATCAAATGATGACTC 12322 31 100.0 34 ............................... CACCACCAGGATGGAGTTGTCATCAAATGTGTAG 12387 31 100.0 35 ............................... CTCCAACGATGATCGGCCATGCCTCTACAGGCACC 12453 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 62 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCAAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTCGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATCGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCTTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTTATTGATTTTAAAATAAAATCACTTCACCTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGATTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CCAACCACACCCCCGCCAATGCGACTTGTTAATTCTACTGTGTTACTAAATCCGAATCCGTTGGTACGGTGAGACCCCGCAACACGGGCAGTGTGGGAGGCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4540-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVFT01000103.1 Xanthomonas oryzae pv. oryzicola strain BAI20 contig_104, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4539 31 100.0 35 ............................... TCTTCTTCACGGCGGCAAAGCCGGGCAGGGGAGAC 4473 31 100.0 34 ............................... TCTTTAACGGAAAGTTCGATCTATTGCACATCCT 4408 31 100.0 33 ............................... ACGAAAACCATGCTGGGGCCTACCAAAGCGCAC 4344 31 100.0 36 ............................... ATTGCGCCGTTGAAATCCTCAAGCTGCGGTGGAATC 4277 31 100.0 35 ............................... ATGATTCGTCTGTTTGGGCAGGTAAACCAAGCGGT 4211 31 100.0 34 ............................... CCTACAGCCGGCACGCAACCGTATCGCACGCTCA 4146 31 100.0 34 ............................... CCAGTCAGAGGCTGCCATGATGGTTTCTTGGAGG 4081 31 100.0 34 ............................... TTGGCAGTGCTGCCAAGGGGCAAGACTCTGTCGC 4016 31 100.0 33 ............................... TTGGAACACTCGCGGCAATGCCGGGGGTTGTTG 3952 31 100.0 36 ............................... GCGTGCTTGCACGGCCGCGTTGCGCTGCTCGGCAGC 3885 31 100.0 35 ............................... CAGAGGATTGGTTCCGCCGGGTGCTAGACGAGAAC 3819 31 100.0 34 ............................... TGTGCGTGAGGACCAATGTGGTCTAAGCCATTGA 3754 31 100.0 38 ............................... TGATGGAACTTCTTCAAAAAATGTTTGGTCCTTCTATG 3685 31 100.0 36 ............................... TTCTTACCGTGCAAGCGAGTTTTGCACTTGATTGCA 3618 31 100.0 34 ............................... TGTTCCAATGAATTCGGCTTAACCAACAGATTCC 3553 31 100.0 34 ............................... ATCACTGGGCTGGCGGGAAAAAACCAGTCAATGG 3488 31 100.0 34 ............................... ATGCAAGTCGAGCCCCCGAAACAACCCGCCGCAT 3423 31 100.0 34 ............................... GACTTGGTGATAGAGGCCGCCCCAGGGGCGTTAG 3358 31 100.0 35 ............................... ATCACGGAACGTGTGCAGTACGGTGCGCCAGGCAA 3292 31 100.0 35 ............................... TGCACGTAGCTCGGCTGGCCCGCCTTGTCGGGCCG 3226 31 100.0 35 ............................... TCGCTGCGTGCTGTAAACACTTCAGGAAGGCTGTC 3160 31 100.0 36 ............................... TGTTCCAATGAATTCGGCTTAACCAACAGATTCCAG 3093 31 100.0 34 ............................... CGGCGAAAGCGCCATCCCCTGGCTCGCCGCGAAG 3028 31 100.0 34 ............................... GATCAGTCAGCGCCAGAGTCGCGATTGCGCGGAT 2963 31 100.0 34 ............................... AGATGCGGCCGCATGGGGTGTAGGGGCAGCGCCC 2898 31 100.0 37 ............................... GAACCACCACCAGTTGCCATCCTTGTCACGCGCAGGC 2830 31 100.0 35 ............................... ATGCAGATCCGTTCCGCAATGCGCAGCGGCAATTG 2764 31 100.0 37 ............................... GGGTCTTCCTTCGTGCCGACGCCGACGGGGCTGCGGC 2696 31 100.0 35 ............................... CCGGTATCGTCCCGGTACCTGCACTTGGCAGCAAA 2630 31 100.0 33 ............................... ATCCCGCAGCAGAGCTGAGAAGTTTTGCAGGCC 2566 31 100.0 36 ............................... CTTCCTTCGGCAGGTATGTTACGAGGCAGGGCTTCA 2499 31 100.0 34 ............................... TCACGCTCAGCCTTGCGGATATTCACTAGGTTGG 2434 31 100.0 35 ............................... TGCACTGCGGAGCAGTCAGACAGCGCCGCGCAACC 2368 31 100.0 33 ............................... TCGGCACTTGAGGTCTATGTGCAAGCGAACCTC 2304 31 100.0 34 ............................... CTCTTTGACCTTGCCGATTTGGAGATGTGGGACA 2239 31 100.0 34 ............................... TGCATCTGCAACGTGATCAGCTGATCGCTGCAAA 2174 31 100.0 34 ............................... GCGGTCCAGGCGTGGTAGTGCGATGCCCAGATCA 2109 31 100.0 36 ............................... AGGACGTTGTTGACGAAGCACGGACCCTGACGCCAA 2042 31 100.0 36 ............................... CCTCAAGATGCCACCGATACTGAGCGCACTGAAATA 1975 31 100.0 37 ............................... CGCATTTCGGCTGAGGACTATGCTAACGCTGAGGACG 1907 31 100.0 37 ............................... CCATGCATTGAACATATAGTCGAGAAGCTCTAAAGCT 1839 31 100.0 33 ............................... TTGATAGCAAGGATGTTCCACCTGAGTACCTTC 1775 31 100.0 36 ............................... TCATTCCCCCTAGATTACGTGGCGTAAGTAATTCAG 1708 31 100.0 34 ............................... ATGCGCTCCCGCAACCAGATGGGCTGCGGTGGCT 1643 31 100.0 33 ............................... CTGCACGTTGTCGCGACGCGCAGCCACTCCGTT 1579 31 100.0 36 ............................... TTCGCGGTCGATGCTCATGCGGCCATCGACAACGCC 1512 31 100.0 34 ............................... CGGTGTAGCTGCCCCGTAGCTGCACAGCCAGTGT 1447 31 100.0 35 ............................... ACTGAGCGCCGGCAGCGCGTTGCCGACGCCCACGC 1381 31 100.0 35 ............................... CGGTGGAGGCTCAAGGAGTTGCAGGATCACATGAG 1315 31 100.0 36 ............................... GTCCTTCACGCAGGCGCAAGCACGCCGTCAGCCGGC 1248 31 100.0 35 ............................... ACCCAACGGGATGCTGGCCTGTACATAGGCCCACG 1182 31 100.0 33 ............................... TCCGAATAGGTACCACTGCCGCCGCCGCCGCAC 1118 31 100.0 35 ............................... ATGTCCATGAGGGCATGTCACGGAGACACTGCCAC 1052 31 100.0 34 ............................... GTAGACTGCATGGGCAGAGGGCCTCAAGGGTTGT 987 31 100.0 35 ............................... GCGATCAAGCGCAGCAACCCCGCGTTGAGCTGCGT 921 31 100.0 36 ............................... GGCATGATGTTCGCCGCGATGACGTTTTGTGCATTG 854 31 100.0 36 ............................... AGGATAGTGGTTGTGCCTGGCGCAGCAACCCGCAGC 787 31 100.0 34 ............................... CGGCTCAAGCTGCCCACAGATGCAAGTGGGCAGG 722 31 100.0 34 ............................... AAGACCCACAAGTGGCTTGACCGTGAGGCTGATG 657 31 100.0 33 ............................... TTGCCGTAGGGGTTAAGGATGCGGTCTATGGAC 593 31 100.0 36 ............................... TCCATCGCGCGAATCAGCGTGCCCTCGGTGAAGCGG 526 31 100.0 35 ............................... ATCGTTGCCGAGCCGGTCGGCCAAGTTGCGACGTA 460 31 100.0 35 ............................... GCTGGGAAGGCATTGTGGCGGGAGTGCCAAACGGG 394 31 96.8 0 ...............A............... | ========== ====== ====== ====== =============================== ====================================== ================== 64 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : AGCTCTCCCGCGCGGCCTGAAGGTCTTCCAATAGTGGCACAAAGGTACGATTATTTGTAACACAGTGGAATTAAG # Right flank : CCGTAAATACGGAGTGCGGGCTCATAATCATCTAGGTCATGTTAACACATCCGAAGCCCATCAACGGTGAGCACAAAGCTGAGGAATCCAAGGAACATGACGTCCAGCTTCTCGAAGCGTGTGAAAATCCGGCGGTAGCCCTTCAGGCGACGGAACAGTCGCTCCACGTCGTTGCGTCGCTTGTACATTTCCCGGTCGTAATCCCAAGGGTCGACCCGATTGGACTTGGGTGGGACCACCGGCACGAAGCCAAGATCGAGCGCCAACTGGCGGGTTTCATTGCCTTCGTAAGCCCGATCCATCAGCAAATGAATCGGGCGCTCCACCGGCCCCAGGTGTTCAAGCAACGTGCGGCCTGCCGGTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //