Array 1 1040975-1042464 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061948.1 Klebsiella pneumoniae strain IR5065 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1040975 29 100.0 32 ............................. CATTTCATAGTGATTCGACTATTTAATTAACA 1041036 29 100.0 32 ............................. AGTTCACGACAGGCAAAGTCTTTACGGTATGC 1041097 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 1041158 29 100.0 32 ............................. TTATTTCTAAACTAAGTTTTGTTTCATGCAGT 1041219 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 1041280 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 1041341 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 1041402 29 100.0 32 ............................. CGTGAGCATCTGGGCATCTTCAGTGATAGCGT 1041463 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 1041524 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 1041585 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 1041646 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 1041707 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 1041768 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 1041829 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 1041890 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 1041951 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 1042012 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 1042073 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 1042134 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 1042195 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 1042256 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 1042317 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 1042378 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 1042436 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 114702-113520 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061949.1 Klebsiella pneumoniae strain IR5065 plasmid unnamed1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114701 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 114640 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 114579 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 114518 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 114457 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [114404] 114403 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 114342 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 114281 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 114220 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 114159 29 93.1 32 ............TG............... AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 114098 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 114037 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 113976 29 93.1 32 ...........CG................ AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [113962] 113914 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [113902] 113852 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [113841] 113790 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 113729 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 113669 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 113608 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 113547 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.4 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.43, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //