Array 1 999-317 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSMZ01000127.1 Clostridium sp. link-BC1 bc1_c798, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 998 29 100.0 36 ............................. TTGTATGATTGGAACTTCCATGACATTTGGAAGTAC 933 29 100.0 36 ............................. GTAAAACTGTTTCTATGGTTGAATATTTAGAACGTA 868 29 100.0 38 ............................. TTCAGGTTTTCTCCGTCTATTGTTACTTGGTTTATTCC 801 29 100.0 36 ............................. GTTGGCTTAGGTTCTAATACATGCATAATCGAAATG 736 29 100.0 37 ............................. TCAAGCCCGTCCCAAATATCCCACCAAGCAGGTTCAT 670 29 100.0 36 ............................. AGTAAAGTACGACATTCTACAACATCAAAGCATTGT 605 29 100.0 36 ............................. GAGAATTGCGAACACAAGGAACCGGCGATAATAAAA 540 29 100.0 36 ............................. AGACTTGACTATATGGACGAAGAATATATCATCGAA 475 29 100.0 35 ............................. GCCAAAAAACTTCAAGAGTTGGGTTGAATACAGAG 411 29 100.0 37 ............................. AGAAAAATTAAGTTGAACACTATTCCAGTTGAAATAT 345 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 100.0 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : AGGATTGCATCGACAGTATCGCAAAAGTCACAAAAAACGAAAACGATGTTTCCAAGTGATAACTCACTAGAAAAGATGCTGTATTTGGCATCAATGAATGTGGTAAAGAAGTGGACACAACGGTATAAGGACTGGGATAGGGTACTCAGCCAACTAATGATTCAGTATCCGGGTAGATTAGAGAACTACATTTAAAAGCATTCACCCCCACCGCCCTCAAGGGCTCGTCCTCATCGCCGGACGGGCTAGACCTCACAAAATTAAAAGCGGTGAGAAAAAGGACAGAATACCCTATTATAATCAATTATGGCCAAATTGAATCAAATTTATGTATAAAACTCGGCAAAACTGGCAATAATATATAATGAAGAAATGATTTAAGGTAACATTCTGTAAACTTCAAAAATTCAAAATTTCTTGCTAAGGAGGATTGTAAAAATTCCGATACACAAAATTATTTACATTACCTTGTTGGACGCAATCAACTTCAGGAATGCAGA # Right flank : GGGAAGAAGCTGAACCGGATCAATGAAATGGCTGGCGTATTGCTGTAGTTCAGCACTTTAAAATCGGAGCAAAAATCAAATTAAAATTCTCTTAATACCAGTGAAAACAGCAAAATAAAATTCTATACGCATAATACTACCGGAAAAAAAGCAAATAAAAAGCAGGTCAAATGACCTGCGAAATCAAAATTCTGGGTAGTCCAGTTCCTTGTATAAATGTAGCAACGCATAATGCAACAGTAGCGCCGTCAACAACACCGAGAACAGTAGTAAGCCTTTCTTAATTCCAAAAAATATCATTAAAATTTACCAAATGA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 19569-15850 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSMZ01000072.1 Clostridium sp. link-BC1 bc1_c33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 19568 37 100.0 38 ..................................... AATGGCTTGTAATCTCCATTGCTACAATCACACAATGG 19493 37 100.0 36 ..................................... TTATCAACTGATTTGTCTTTCTTTTCATCGGCATGA 19420 37 100.0 37 ..................................... AAACGGTTATCAACTATGAGAATGAAAACGGAACCGA 19346 37 100.0 43 ..................................... AGCCTTTCGCATACTCAGGAGCATATTTTGGATTATCAAAACG 19266 37 100.0 36 ..................................... TTATATAAATAAATAATATGAGAAGGTGATTAATAT 19193 37 100.0 37 ..................................... TGAATTAAGAAGAAAACATATTACTGAAAAGCCTAAA 19119 37 100.0 36 ..................................... TCCACTTCAACTTTTGTAAAATATTCTTCCAGATTA 19046 37 100.0 36 ..................................... ATATTTTTCCCTTTTGTATTGGGCTCATATTGTCCG 18973 37 100.0 37 ..................................... TACATAATAGAACCTCCTTAAAATTCAATCAGTAATT 18899 37 100.0 36 ..................................... TTTCTAAGCTCTTGTAGGTATTCTCTCAACTTTGCG 18826 37 100.0 34 ..................................... GAATACAAAACTTTTTCTGATGAAGATGCAGAAA 18755 37 100.0 36 ..................................... ATCTCTATTTCCAAATCTAGTGATGGTATAAAGAAA 18682 37 100.0 35 ..................................... CCCTTCAAGATACTGAATCAATCTGTCTGCGTCAA 18610 37 100.0 36 ..................................... TTCTCACCAAACAAATTCTTCGTTGTATTTCTCGAA 18537 37 100.0 36 ..................................... TTCTCACCAAACAAATTCTTCGTTGTATTTCTCGAA 18464 37 100.0 37 ..................................... AAAGAATGTATATTATTTTGCAGGGTTTAAAACTTTA 18390 37 100.0 38 ..................................... TTGTTGCTGGCGTATTCCACAAGTCAGGGAAAACTGAA 18315 37 100.0 38 ..................................... ATGTCAGAGCCCTTCACATAGTCAATTACCCTGTAATA 18240 37 100.0 38 ..................................... TAAAGTGCTCTGTTGCTGTGTTGAATTCGCTTAAATTG 18165 37 100.0 36 ..................................... TGAATACCACTAGCTATGAGTAGATAAAAATACCTC 18092 37 100.0 37 ..................................... AGTTAACACACATTTTAAAACCCTCCAATTTGATTTA 18018 37 100.0 37 ..................................... AGCCTTGTGCCTGTAGCATTACAATCCATAAAAGATA 17944 37 100.0 39 ..................................... TCTCCTGCTGTTGTAATGCCTATCATCAGCTTATTTGTG 17868 37 100.0 36 ..................................... AATACGCCCAGCTTTGACAATAATTCTATCTGTTCC 17795 37 100.0 35 ..................................... TTCTCATTCTGGCCAAATTTGAAGGTATGCCTTGG 17723 37 100.0 36 ..................................... ATTTTTCATTCGCTTCTTGCACTTTCCCGAGTTCAT 17650 37 100.0 37 ..................................... CTATTGGAGCAGATATGAATTCTAGAAAGTCATTTCC 17576 37 100.0 36 ..................................... CTGATGATGAGGACGCAAAGTTGAGAGAATACCTAC 17503 37 100.0 37 ..................................... GATGAAGTACATCTAAACAAGAAAATGCGGTGTGTGT 17429 37 100.0 35 ..................................... CCTAGTGCTCGGCAACCAATTATGTTGCCTTGTGA 17357 37 100.0 37 ..................................... GTATTTTTGCTATTTCTTTTTGCTTTCCTATTAGGTT 17283 37 100.0 36 ..................................... AACAGGTAGCTAAAACAAGTAGGGAAGTAGCTGGTA 17210 37 100.0 37 ..................................... AAAAAAAGTAGGGGAAATAGCTCCCTATAATTCACAT 17136 37 100.0 36 ..................................... TTTCAAGCCTATTAAGTATATCAAGGATATCCTTGA 17063 37 100.0 37 ..................................... CCCAATCTTGTCCGAATAGACAAGATTTGGTGATACC 16989 37 100.0 37 ..................................... AAATTTTCTTCCAACGTACAAAAACGCTTTTCTATTC 16915 37 100.0 35 ..................................... ATATGGAACATGAGAGTATATTGTTTCATGTCAAC 16843 37 100.0 35 ..................................... GATTATCTGCAGTTCGTCTCCTGCGAATGGAACCG 16771 37 100.0 36 ..................................... AATAAAACCAATAATTGTTCATCAGACAAAAAAATC 16698 37 100.0 37 ..................................... TAACCGGTGATACAGAATTATCAACGTAGTTATTATT 16624 37 100.0 37 ..................................... AATAACTAAATACCAAGAGTGCTTGTGTCAGTGCCTC 16550 37 100.0 37 ..................................... AGGAAACAGGATGCGACTGGTTCCTCAGATGTATCGG 16476 37 100.0 37 ..................................... AGGAAACAGGATGCGACTGGTTCCTCAGATGTATCGG 16402 37 100.0 36 ..................................... GTTTCCATATGCCATAGTAAAGACATGGCAGAGGAA 16329 37 100.0 36 ..................................... GATTTAGTTCATTAAAATCTAAACCAACATTTTCTT 16256 37 100.0 38 ..................................... TTTTTTACTCCAAGCAGATCCGCAAGTTGTTTTTGGGT 16181 37 100.0 38 ..................................... GCGATTCCGAGCATAGCAGCTTCACTCATTTTTACCTC 16106 37 100.0 37 ..................................... ATGTTTTTTCTTCATCAGCAGACGAATTTCTGAAACA 16032 37 100.0 37 ..................................... GGCTGATAAAGAACCCACCATGAAGCTGATGACACTA 15958 37 97.3 36 .........A........................... TTCTCCAGCCGATTGTACCCAAGGCAACTTCCGCAC 15885 35 81.1 0 ..................--......G....A.C.CG | A [15857] ========== ====== ====== ====== ===================================== =========================================== ================== 51 37 99.6 37 GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : GTAGTAGTTCTCGGAACTGGCTTTGGAGACAAGGTTAGCCTTGTGGTAATGGCAACGAAGGATGTTGTAGCAAAGGGCGTTCATGCAGGGAATATAATTAAAGAAGCTGCCAAGGTTGCCGGAGGCGGTGGCGGCGGACGTCCGGACATGGCACAGGCAGGAGGAAAGGACGTATCTAAGATTGACGAGGCTTTAAAACAGGCTGTCAAGGTAATAGAATCGCAAATTGCAGGTTAGTGTGTTGAAAGAATGGTTAATTTATGATATATTTTAGTTGTAGTTTGAGTTATTAGTGGTAAAATGTGGATGAAAAATTATTGAGAAATTTGAGTTGATAGGCTTGAAGACGTTGGGAATACTGGGTTGTATGCCTATGTTGGTAACTCAAAAATGTGTGATTTTTGATGAAAAAGGGGCATTTTTTGATGGGAAGTGAGCAAAAAAGTCTCGTCAAAAAATGCTCGTAAGGCTTGAAAGTTGCGGGATATGGCTTCGAATGC # Right flank : AAATAATTGCAAATATATTGCAAATACAACACAAACTACAATGTAAAACCCGTCAAAAAATGCTGCAAAACAACAAGTTTTGTCGAAAAAAGTTACAAATATTGACACTCCATATTATATAATATACAATGGTGCTATAAAATTTTGCTGCTGTGAAAGAGGGTGACTGCTTGCTTGCAGGTGTATTGCAGTTGGGACAGTATGTAATCAATAACAGAGGCACTGACACTGAAGAGTATCTTCAAGTTATTGAGAACCCTAATGACAAAGGCAATTACAATCATGTCTTAAAGATTGCATTTGATTTTGCAAAAGATAATGTAACCTACCGTGGCATTGAGTATGAAGAATTTTCATTAGGGAAAATAAATAAGTACGCATATAAAAAGGGGAGTGCAAGAGGCGGTGATATAACACCTACGTCAAAGTATACAGATCCAATAAAAACTCTAAACAAGATAACGATATCATTTAATGATGTCTTAAAAACTACAAATCAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: R [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 37146-35681 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSMZ01000005.1 Clostridium sp. link-BC1 bc1_c24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 37145 29 100.0 38 ............................. ATGGCTTTCGCTCTTTCAATCTCTGCAGCCATGCCTGA 37078 29 100.0 37 ............................. TGTTGATGACAGCAATATGAAACTGCTCGAACTTTCA 37012 29 100.0 35 ............................. ATAAAATAGCCCAATATTTCGGTGTGTCATTAGGT 36948 29 100.0 39 ............................. AATTTTATGGACTTAATATATCGCAAGTTTCCAATCCAA 36880 29 100.0 36 ............................. GTATATCAAGGCTGGATTCAAAACTTGGTTTCATTA 36815 29 100.0 35 ............................. ATAACATAGTGTTCATGCCCTCTAACGGCAACCGC 36751 29 100.0 35 ............................. TGGTATTAGCATACACTTCAGACCGCTTTGACGAG 36687 29 100.0 35 ............................. GCGTATTGTTGACTACGTCTTGCGTCATATCCGTA 36623 29 100.0 36 ............................. CTTTACGTGCCGTTCGCTATATCCAACTTCCTTTCC 36558 29 100.0 38 ............................. ATAATCGTTAATATACTTTGTTTCATTTGATATTCTCC 36491 29 100.0 37 ............................. GGATGATTATAGTTTAGCAGGGATTGAAACGAATGTC 36425 29 100.0 35 ............................. TTTTTTCAATCGCTTGTTTTGCTTCCGCAACCTTC 36361 29 100.0 35 ............................. GCGCCAAAAGGGAAATGGCATGGGCTGTATATCGA 36297 29 100.0 35 ............................. TTGCATTGCTCAGGTCTGCGCCTCTCAGGTTTGCA 36233 29 100.0 36 ............................. TGACGTATAAAAATCATGCAGCCTATTTTCTTCAAT 36168 29 100.0 36 ............................. ATAAGTCCGGCATTTTCAATTATACTTATGAGCTCG 36103 29 100.0 37 ............................. ACTGGTAATGGTAGTTTATGCCTTCTTTTTTATTTTG 36037 29 100.0 35 ............................. ACCTTCTGATAAGGTAAGGAAAAAGACAGAAAACG 35973 29 100.0 37 ............................. GTGTGAAATTGATATTCGGGAAATACTGGAACGTATC 35907 29 100.0 36 ............................. GGGAAACATTGGACGCAAGAAGAGGTTGAATTTTTG 35842 29 100.0 37 ............................. TTACAAAGATATGATTATTTTCCTCTGGAGTTTTATT 35776 29 100.0 38 ............................. TTTTTGGCAGAGGACGATGTTCTTAAACTGCTACGAAG 35709 29 86.2 0 .................C..A.CA..... | ========== ====== ====== ====== ============================= ======================================= ================== 23 29 99.4 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : GGATAATTTATTAAAATTTAGCTTGCAAAATATTGAAAATAATCTTATCATAATCTTGTGGGTGTGCTTTTCTAAGCATATTAGCAGGAGAAAGAGTGTTAAGTGGCCAAGCAAAACTGACTCTTTCTCTTTTTATATTATGATAATATACTTTTGGGATTTGGCAATAGATCAGATGGTATTTTGATGTATTTTTCAGCAGATTATTTTCTTGATTTATAGGTAAAAGTAATTTTAATTTGACGCTTTAGCAATCTAACAGGGAAAAACAATTTGTCGCTCTAC # Right flank : ACAGACTGCCCAAAGGAATGGTAACATGGACAGCCAGAGCCTAAACAGCTTCAACTTAATATACTGCTCACAAGGTATGCTAACGCCTTCGTAGCTCCTGCTGTGAAAAAGCTAAATGTCAAATCTCCCCCTTCTCCACAAAAACAGTAAAGGTACCATCCTCATTATTCACAACATCAAGTACTTTATGCCCCTCTTCCTTGAGGCTTCTTGGCACATTCAAAATAGGTTCTCCCTCATTCATCTTAATTTCAAGAATTTGCCCTTCCATAAGTTCCTCTATGGCAATTTTTGCCTTAACAAAAGTCATGGGGCAAACAACATCAGTGATATCTACAAAACCATTTGCTTTAAAATCGCTCATATCCATCCCTCCATTTCAAGCGGTTCTTGTATCCACATAAAATGCTCAATAATCACACCGCTTCCAACAATTCAACAAGCCTATCTTCTAACAAGCCCCAACCCACTCTGTCCAATGTATTTCCAAATCTTTCACC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 94703-100308 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSMZ01000077.1 Clostridium sp. link-BC1 bc1_c34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 94703 29 100.0 35 ............................. CTTCAATAGAATAAGCAGGTTCGATTCCTGCATGG 94767 29 100.0 36 ............................. AAGAATTCAAAGATATAAACAATAACAGAGGCTTCA 94832 29 100.0 36 ............................. AGCGAGGATTTAATCCTCACAAGGCTATAAAAGAAA 94897 29 100.0 35 ............................. TATGATTTCTGTTTGGATGTAACTTTGTGCCGAAG 94961 29 100.0 37 ............................. TTCCGGGCCGAGGTCAAGCATGGCCTTACACACCGGA 95027 29 100.0 37 ............................. ACGCAGTCAATCAAGATAAGCTTCTCTTTGTCCGGAT 95093 29 100.0 38 ............................. CAGATTGCGAGAACGTTCGACTAAATGTAAAATCCTCC 95160 29 100.0 36 ............................. GATGTAAGGTAGACAGACAAGAAATTGACAGCATTA 95225 29 100.0 37 ............................. TTGGTGACTTTGCCGTACTGTTTTTTGACTGTGTTTC 95291 29 100.0 36 ............................. TAGTCTTTTTCTTCAGCTTGCACTTTCAATATCTTG 95356 29 100.0 36 ............................. GTCACAAAAACAAGGCTCGGAGAAGTGGAAGGTCTT 95421 29 100.0 36 ............................. CCAGAAATGGGGGCATACTCCAATAGTTGTGACCCC 95486 29 100.0 35 ............................. GTCACGTAATGAAGCATAGTCAATACCAACCGTGC 95550 29 100.0 35 ............................. TTGCTCTTTTCGCTTGCCATCTCAATTCCAACTGG 95614 29 100.0 36 ............................. CTTTGACGGCTATATGTGCGTTTTGGAGGGGCATTG 95679 29 100.0 37 ............................. ACATGAATGGTTCATTTTGCCCCCAGGCTGTAAGTCC 95745 29 100.0 37 ............................. TGCCGGCATTTTTACAATGTTTGAGATTTTCAGCTTG 95811 29 100.0 36 ............................. ACCTCTGGATTGCCCCATACTGACATAGCAGCCATA 95876 29 100.0 37 ............................. GTAGTTGAAGACAATGTTAATATCTCATCCGCTGCCT 95942 29 100.0 36 ............................. TCAAAATCGATTTTAATTAGCTTTTCTATAACAGGA 96007 29 100.0 36 ............................. TGTTGAAAGATTTTATTTCTTTCTACATGAAGCACA 96072 29 100.0 36 ............................. GTTGGATTTGCAAACATTACCTCGATACCATACTGC 96137 29 100.0 37 ............................. TTTCCTTCTCCGCCTCTTCAGCCCTCTTCTTAGCTTC 96203 29 100.0 37 ............................. GTTGCAACGTCTGTGAGTGTTGCTTTTGCCTTGATGT 96269 29 100.0 35 ............................. TTTTCTTTTCTCCTTCAACCAGGGTTCTTCTGGCC 96333 29 100.0 35 ............................. TAGCTTCTTCCCAACCATAACATACCGTCACATAA 96397 29 100.0 36 ............................. GCGGCCCCGGCTGGCACAAGCCGCTGGACCAGGCTG 96462 29 100.0 37 ............................. TCTCTGTTAATGTGAACGGTGAATCTAATAGAATCGC 96528 29 100.0 35 ............................. ATTAGCCCGTTATCAACTTGTTCGACTGCAATTTC 96592 29 100.0 35 ............................. TTCTTTAAGCACATTTGGGCTACCAACGATTTTCT 96656 29 100.0 37 ............................. TGTTTTAGTGGATGATTATAGTTTAGCAAAGATTGAA 96722 29 100.0 36 ............................. AAATTTGGGTCAATCGGTAAATCTAAAGTAGCAGCA 96787 29 100.0 36 ............................. ATTTAGGATATCTTCGTTGCTCCACGAAATTTCAAG 96852 29 100.0 36 ............................. TTCTTTCGATAAACTTCTTATATTTCCTCCGGCATT 96917 29 100.0 35 ............................. AAGCAAGCTCAGAGGATGTGACTCTGAGCCCTGAA 96981 29 100.0 34 ............................. TCTTTCAGAACTTCTTCCGCGCTTTCATATGCAG 97044 29 100.0 36 ............................. CAAAAATGACTAGGGCAAAAAAGAAAAGCCTCAAGA 97109 29 100.0 35 ............................. ACTTTAGTCGAATGGCTTAAAAACAATCAGCATAA 97173 29 100.0 35 ............................. AGTTGTAGATGAATACGGACAAATTCAGGAAACCG 97237 29 100.0 36 ............................. GAATAGTCGTTGCCCACAATGTTTGCAGTACCATTC 97302 29 100.0 36 ............................. ACAAGGAAGGCTTGGGAATGTGGTTCCTCCCATCCT 97367 29 100.0 37 ............................. AGAATAAGGATAAAGCAAAGATGTTATTTTTCTTCGA 97433 29 100.0 36 ............................. GTCAAATATCATTCTGACAACTTGTGCAGCTTCTTC 97498 29 100.0 36 ............................. TCTGCTATCTGCATATATAAACCTACAGCAGATGCA 97563 29 100.0 40 ............................. TTATTATCAGCCATTTGAGGATTAATCAGCAGATTATCAA 97632 29 100.0 35 ............................. CCATACTCAAAGTTATATTTTTTTAACTCTTCTAC 97696 29 100.0 36 ............................. CCTTTTTGTTATTTCCACTGTATAAAATGGCGTTTT 97761 29 100.0 36 ............................. GTGCAAAAGTTGCCTTGATTATAATCACCACTGTTG 97826 29 100.0 36 ............................. GCACAAGACAACTTCACGCCGGTTGCCCCGTGGGAA 97891 29 100.0 35 ............................. ATAACGTGTTCGGCTTGTTTCTTCATAGACGCCGC 97955 29 100.0 35 ............................. GAACTTTGTTTTAGGTCGGGTTCGTCGTCTCCCCA 98019 29 100.0 37 ............................. TAAACATAAGTTGTATTGCGGTAAGCAACATATCCTC 98085 29 100.0 35 ............................. GTGCTTGGTAGATTCCATTCCAGGATTCTAACGCC 98149 29 100.0 11 ............................. TTATAACTTGA Deletion [98189] 98189 29 100.0 36 ............................. GGCTATATCAGGTATAGCATTTATCCCTGCATCTAG 98254 29 100.0 37 ............................. CATAAGCTGGCATTAGATATACAGTCGTGAGAATAAA 98320 29 100.0 37 ............................. TTCACCTGTTAGAGAGGGAGATTTTAGAGTGTCTGAA 98386 29 100.0 37 ............................. TCTAAATTCTGCTGTAAGTTCGCTGTCAAATGTTTCT 98452 29 100.0 36 ............................. GTTGGTGATTACACTCCAGGGACTGCCCGTGGTTGG 98517 29 100.0 38 ............................. TTTTCAGCAGCAATCACACGAGTTCCAATTTCACAAGC 98584 29 100.0 37 ............................. GATCAAAAATCAAATATATCATAAGAGAAAATATCAA 98650 29 100.0 35 ............................. CATATTGTATTGCTCAGAAGTTACATAGTAAGGAA 98714 29 100.0 36 ............................. GAGTTAAACGGAAAATGGAACAATAAAGCAGACTTC 98779 29 100.0 37 ............................. ATCGATAGAAAAATCTCATAAAACGCTCCGCTAGTAA 98845 29 100.0 37 ............................. CCTTTTGAGAGGAAGATGTAGCTGAAGCTTCTGCTGG 98911 29 100.0 36 ............................. AACAAAAAGGTATCACAGTAGCTCTTACCCCAAAAC 98976 29 100.0 36 ............................. GAACTTTCTTTTACAATAGATACTCTCGTATCATCT 99041 29 100.0 36 ............................. ATTCTGCAGTCAACACAAAAGTATTCTATAGACACA 99106 29 100.0 34 ............................. ATACTTGCTGGTATAGAGAATATAGGCTTTTAAA 99169 29 100.0 36 ............................. ATTGGTGTAAGTATCATGGCTGTCATGATTGGGGTA 99234 29 100.0 38 ............................. GTATTTATTCTACATCGGGTTTAAATTTTCGGATGGAC 99301 29 100.0 38 ............................. ATCAGTAAACAGCATGACAAACACAGTCAGCTCAGCGC 99368 29 100.0 35 ............................. TACTGAAACAAATATACTGACTTTCATGTAGTAGA 99432 29 100.0 37 ............................. GAGCAAAGGAAAGCAGAAGCTGAAACATTAGCAAAAC 99498 29 100.0 35 ............................. CCGCACAAACCACATTCTGTTGTTCCGTTGTCTTC 99562 29 100.0 35 ............................. TTGTGTATAGCACTGTAAATGCGGTCGCGCCCTAC 99626 29 100.0 38 ............................. TGATAAAAATAGTTTGAAACGTTTCAATCCTTATTTTC 99693 29 100.0 36 ............................. AAAGGATCATAGACATGACCGGATTTGTTGCAAATG 99758 29 100.0 35 ............................. AAAAATAATTTTTCTTGGCAATATTTAGAATCTTC 99822 29 100.0 37 ............................. ATAGCCGACTTTAATTGAGGGGGTAAATATGCATAAT 99888 29 100.0 36 ............................. AACATTTGAGAGGACTTGGGATGCTTTGAATAGAGA 99953 29 100.0 38 ............................. TCGTGTGGCAAAGCAAAATTATATTTGCGCTCGCGGGT 100020 29 100.0 36 ............................. AGAAAAACTATATTGTTATTGGACGAAATTCAGAAT 100085 29 100.0 35 ............................. TAAATAAAATTTCGTCACGAGGAACAGGAGCATTA 100149 29 100.0 37 ............................. TAGTAAAGGTTATAAGCCTGTGAAGGGTTCTGTTTTG 100215 29 100.0 36 ............................. TCGGGGTGGCCTGAATATATTTTTATTTGCGCTCTA 100280 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 87 29 100.0 36 GTATTGCCTTAACTATGTGGGATGTAAAG # Left flank : CAAGTATTTTATTGATGATGAAATATATAAACCCTTGAAGGCGTGGTGGTAAATATATTTGTCGTATTAACATATGATATTGAAGTAAAAAAAATCAACAAGGTACGGAAAATACTGAAGAAGTATTTGGTTTGGACACAAAATTCAGTGTTTGAAGGAGAAATCACAGAAGGTAAATTGCAAAAATGTATAGGACAAATTGGTAAGATTATTGACAAGAATGAAGATTCGATATATATCTATATTGTGGAAAATCCCAAGAATATTGTGAAGAATAAACTTGGAAAAGAAAAGGCACTAGACGAATTGATTTTATGAATTTGCAGCAAACCGATTAATTTAAGCAAGCTCTATAATGGCTTAAAAATAGGCATTAGAAGGATTTATGGGATAAACCGGAAAACACTATTGGAAGTTTACTGCAGTTTAATTATGTTTGAGAAAATCTCAACCCTCTGTATATAGCTTAAACAGAGGATTTTAGATTTCTGTCAAATTGG # Right flank : TCCTTTGTTGGAGAGAATGTTGAAAATTTTGTGTATAAGAGAATGAAAAGACTCCTTCTTGGCAAGAATTACAAAATAATATCCAAGGAGGAGATTTTTTATGTCAACATTATCAAAAGAGCAAGTGAAAGAAATAATTAAGGGCAATAATTTCCAAAGTGTTGCCGATGTAAGTGCATACCTAAGAGATATCTTTAAGGACATTATTCAAGAACTTCTTGAAGCAGAACTTGAAGCTAAATTGGGGGTAATGGAAAAGATGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGCCTTAACTATGTGGGATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.07%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 12380-16542 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSMZ01000024.1 Clostridium sp. link-BC1 bc1_c7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 12380 37 100.0 35 ..................................... AACGCTCATATGATGGATATGTTCAACCTGCATTA 12452 37 100.0 36 ..................................... TGAAAACTTGGAGACAATGAATGACAATGACGTATG 12525 37 100.0 36 ..................................... GTCTCCAATGTGGATATAGTACCACTTTTCGCCATC 12598 37 100.0 36 ..................................... TAATTATATCATCTGAAAGAGATATTAAGGCTTTTT 12671 37 100.0 36 ..................................... ATTGTCCCTGTCGATAGATCCATTCTTTCGTTCCGG 12744 37 100.0 35 ..................................... TAGAGTAAGAATTGATGATTTATATATATTAATAG 12816 37 100.0 37 ..................................... TCCAATGAAAAACTTAAAAATTTTTGAAAATTTATAT 12890 37 100.0 37 ..................................... AGATGAACTAAATATTGTACACAAGCCTTAATGTTCC 12964 37 100.0 37 ..................................... TATGTAGGAATTTCATCTCCATCTAAAAAACTTGCTT 13038 37 100.0 35 ..................................... TTGAAATCTACAACACTCTGGAGCTTTTCAATATC 13110 37 100.0 38 ..................................... TTAATCAGTTCGTCTAAAGATATGCCAAAGCTCATTAA 13185 37 100.0 35 ..................................... ATCCATACCAAAACCTGTAATCTGTTTCAGATTTT 13257 37 100.0 36 ..................................... TAGATGGGATAAAATTAAAGAAAGGTTGTGGGTATA 13330 37 100.0 36 ..................................... TATCAGACCTACACTTAGGACATAAAAATATTATTG 13403 37 100.0 35 ..................................... TTATTGCTATCTATCTTTGGGCGAGTATCAGAAAA 13475 37 100.0 38 ..................................... AAGTAGACAGAGAAATATACTCTATTAGTTTTGACGGT 13550 37 100.0 37 ..................................... TAGCCACCATCTTCTAGAATAGTCTTCTTGATTAGTC 13624 37 100.0 40 ..................................... TATGCCACAAGTAAGAGTGAAGCAAGTAAAAAGGCAGAAG 13701 37 100.0 36 ..................................... AAATAGTACAATCAAGTATGAAAATTATATTTCAAA 13774 37 100.0 36 ..................................... GTTAAAAATTTTCTAACTATTTCAATTGAAAACCGA 13847 37 100.0 35 ..................................... ATTGAACAAGCATTATCAAGAGTTCCTGATACCAT 13919 37 100.0 37 ..................................... AATCATCAATTAATAAATTTTCGTTTTTATATCTATC 13993 37 100.0 37 ..................................... TAATATTACACTATAATAAAAGTAACATTATATATTA 14067 37 100.0 37 ..................................... TTACTTGTCATCCCTAGCTTCATACCCATTAAAGACT 14141 37 100.0 37 ..................................... TTTACACGATGCAGAAAACACAATAATATGTGCGGAA 14215 37 100.0 36 ..................................... TTTAATAAATAAATTATAAAATTTCATGTGTGCATT 14288 37 100.0 35 ..................................... ATCCTGATTGGACATGTAGAGGTTTCCAATATGAA 14360 37 100.0 37 ..................................... CTATAAAGGAACTTAGAAATAAGCTGAACCAATTATT 14434 37 100.0 37 ..................................... CTGATACTCCGATTCCCGATTGGGTACGTGAAACCGA 14508 37 100.0 40 ..................................... TTGCTGCTCTGTCAGTCGTGGGATAATCCCACTTCTTGGG 14585 37 100.0 40 ..................................... TGTATAATTCAATTGATGATGTTCAAGGTTATTCAGTACA 14662 37 100.0 37 ..................................... CCCTTTGTCCAAGCGGAGAAAGCTCCACTATCTATAA 14736 37 100.0 37 ..................................... AAGCAATACAGAGACAAGCTAAAAACTTAGGAATACA 14810 37 100.0 37 ..................................... ATCCTAGAAAATGGAGAAACAGTTGTTTTCCCAAGAA 14884 37 100.0 38 ..................................... ATACAAATGGATATTTATCCGAGACCAATTCATAATGA 14959 37 100.0 37 ..................................... ATATTGTTGGAGTATAATTCATCCACTCATATGGGCT 15033 37 100.0 38 ..................................... AATGTATTATCGGTTTTCAATTATCCTTAACAAATCAC 15108 37 100.0 37 ..................................... TATCCATAAAGGATTCTCAATATCTCTTTTTCTTCAC 15182 37 100.0 36 ..................................... TAAGTAATCCTAAACTTGTTGAAGTTGGAATTAATA 15255 37 100.0 36 ..................................... TAAGTAATCCTAAACTTGTTGAAGTTGGAATTAATA 15328 37 100.0 36 ..................................... AAGATCGTATATTAGACAGTTTTAAGGGTCAAGAAG 15401 37 100.0 37 ..................................... AATAATTGAATTATTAATTCTTTTTCATCATCAAACA 15475 37 100.0 38 ..................................... ATTTTTTAGGTAAAGCGTTCCACCAATTCCCCGTATGA 15550 37 100.0 36 ..................................... ACCATCTTTTGCATGAACTGAGGCTTTTAAAATCCT 15623 37 100.0 36 ..................................... GTTCTCACCAAACAAATTCTTCGTTGTATTTCTCGA 15696 37 100.0 34 ..................................... ATTTTTCATTAAATTATTTTTTATCTTCATATAA 15767 37 100.0 37 ..................................... CTAAACGTGTCATCAATGTCGATATCTTCTGCAACTT 15841 37 100.0 36 ..................................... AACTTCTAAGATTCTGCTTTCAAGGTGAGCATACTC 15914 37 100.0 38 ..................................... AAAGTTAGATTAAACGTGTACTTCATGTTTGTAACCTC 15989 37 100.0 38 ..................................... TTTTTCTTTTCAGGATTATCTATTACACAATTATAATC 16064 37 100.0 35 ..................................... TTGGGATAAGTGTCATGTAGGAAACTACTGTGACC 16136 37 100.0 38 ..................................... TACATTTTTCTTATCTAAATAAATAATTTTTTCATTAA 16211 37 100.0 36 ..................................... TGGAGCAGATTGCTGCAGGAGCATTTACAGATAGCA 16284 37 100.0 37 ..................................... TCACTTAAAAATCCATACACCCATTTTCCATCACATA 16358 37 100.0 36 ..................................... TCAGATTTATTATTACTGTTGTCATGCTTATGTTGT 16431 37 100.0 37 ..................................... TAGTCTCGGCGCGTTGTGTGTTCTACAGAAATTGTTT 16505 37 89.2 0 ............T...................C..TA | G [16536] ========== ====== ====== ====== ===================================== ======================================== ================== 57 37 99.8 37 GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Left flank : GGTTTTTCCTTTTCGATATTTGCCCAAGCTGCTGTATCGTGCTTTTCAATCGGTGTTGCCATGTTTTTCTGCTTATACTTGTTTTCTGCCATTTTATCACTCCAAACAATTAACTTACTTTATTATTGCTGTAATGATGTTATTTTATATCCTGACAGATATATTATACTGTTCATTATTAACAAATGATGCTTTTGGTGGAATTTGGTCGTGATTTATTGTCAATTGCCTGTAAGTGTGTTGAAAAAATAGTTAATTTATGATATATTTTATCTGTGATTAGAGTTGTGGGTGGAAAAATGTGGCTACAAAATTATTGCGAAATTTGCATTGGATAGCCTCTGACCTTTGAAAATGGCGGGTTACATGCCTATGTTGGTAACTCAAAAATGTGTGAATTTTAATAAAAAAGGGGCATTTTCTTATGAAAAGTGTGAAAAAAAGTTTCGTCAAAAAATGCCTGTAAGACTTGAAATTAGCTAGATGCAGCCTAAAATGCC # Right flank : AATGTCGTGAAAATGTCATATTAAAAAAAGAAAGAGTCATATCGTAATCTGTTATTATGCCTATCTAAATCTCTCACTAAAGCTTTTCAGAGCATATACAGACTCCTACCATTATTACTACACCTATCTCCTGTATTTACCTAGCAAAAGCTCCTAGAGAACGTGACCATATTGAAGGACGTGGGCTCATGAATTTACTGCGGTTAAAAAAATTTAAGCTATTGATTAATTATTTTCATCGCTTTATAATTATAGTAGCTTTTATTACTTATGTAGTATGGCTTTATTAATTAAAATAAATGCACAGTTTTTAGGTTGTGTTGGTAGAACGGAGGAAAAAGAAAATGCCCATCACTGAATTTTTATCGCGTAATGCTGCGATGTACGGTCATGAAAAATGCCTGACAGAGATTAATCTCGATCTTCAGGAAAGCCATAATGTCATATGGCGTGAGTACGAACTCATCGAAAACAATCCAGCAGGGGAATACCGGAGAGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTAGGACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //