Array 1 103015-105398 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070243.1 Streptomyces californicus strain FDAARGOS_1209 plasmid unnamed2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================== ================== 103015 37 100.0 37 ..................................... GCCGACGGCACCACCGCCCAACTCCGCTACTCACTGG 103089 37 100.0 34 ..................................... ACCGCCCGGGCGGGCGCCGAGCTGGCGGTCATCG 103160 37 100.0 36 ..................................... GCGTCGGCCGTCCGGGCGCACGGCACGAACACGCTC 103233 37 100.0 35 ..................................... GGCCCGCTCCAGCAGTCGGGGGTGGGGCGGCGGCG 103305 37 100.0 35 ..................................... CTCGCGGTCGCCCTGGCGGCCGTCGCCGTGGGCGT 103377 37 100.0 37 ..................................... GCGTCCCGCACCGCCCGGCAGGTCCGTGCCGACGGGC 103451 37 100.0 35 ..................................... GCCACGTCGAGCTGTCGGCGGCCCGTACGGGTCAT 103523 37 100.0 35 ..................................... GTACTGTCCAGGGTGCCCCAGCCGCACAGCGGAGG 103595 37 100.0 34 ..................................... TGCGCGGTGGCGGTGCTGATCCCGTACTGCGCCG 103666 37 100.0 36 ..................................... CACCCGTCGGTGAGGACCGCGACCAGGCCGTGCCGC 103739 37 100.0 35 ..................................... GGCAGGGGAGAGAGCCGGCGGCGAGGTTTCCGGTG 103811 37 100.0 37 ..................................... TGTGCCCACTGGACGGTGATGCTGCCGGTGGCCCCGG 103885 37 100.0 37 ..................................... CCCGCCCCCGGGCAGGTGGCCGCCGCCTACGCGGGCG 103959 37 100.0 35 ..................................... CGCATCGTGTCCACGATCGCCGGGCAGCCCGCCTA 104031 37 100.0 35 ..................................... TCCTCGACAGCCGGGACGCGGGCCTGTGGGCCACC 104103 37 100.0 33 ..................................... GGGCGTCCGCTCGGGTACTGCCCGCTGGCTGGT 104173 37 100.0 36 ..................................... CCAATGCCGAGGAGCGGAGACGCCCCATGCCCTCAT 104246 37 100.0 35 ..................................... AGCACGCCCGGGGCGTTGATCGCTCGGACGAGGCT 104318 37 100.0 35 ..................................... TTCACGGTCCACTCGCCGTCGAGGCGGATCTCGCA 104390 37 100.0 37 ..................................... GACGGTCACCTCCTGGTCGTCGTAGGCGGGTGCGGCC 104464 36 91.9 37 .................G..-....C........... AAGGGACGCCTGCGCGCCTGGAAGAAGGACTGGGCCA 104537 37 97.3 69 .................G................... ATGGTCGAGGCGTGCAGGTCCACCACAGCGATCAACCGTCTCCGTCAGGAGACCGGCGGCGTGCGCCTC 104643 37 97.3 36 .................G................... CGTTCAGTGACGCGGTGGGTGTGCGGGGGAGGCGGT 104716 37 89.2 36 ............T...AC..C................ TCCTCGTCCACCCGGGCCACCGTCGCCTGCAGCACC 104789 37 86.5 35 ............T...AC..C.........C...... TTCAGCCAGTCCGGGCCTCGGCCGCAGAGCTGCGC 104861 37 83.8 37 ............T...ACA.CA............... CCGTGGATCAGCACCCGCCCCGACCCCGTCCCGAGGC 104935 37 89.2 34 ............T...AC..C................ ACGAGGTAGCGGGCGATGTAGGTGGCGCCCTTGG 105006 36 81.1 35 .C..........T..A..-.C.A........G..... ATCAAGCAGTGCAGGCCTGACCACGTGTACGAGGA A [105020] 105078 37 89.2 32 ..........T....T.G....A.............. GGCAAGGCCGGCTACGGCAAGACCGAGATGGG 105147 36 91.9 36 .................-.AC................ GACGAGGTGGTCACCAGGATTCGTCACCACCTGGTT T [105162] 105220 36 78.4 35 ....T.....TT...A.-.AA.A.............. TTGCGCTCGCGGGGGGCTGTGGCCTGGTCGGTGAG 105291 36 86.5 35 .....A..T.T......-..G................ AGTCCAAGGGACAGGCTGTAGAGAGCATCCGCGTT 105362 37 73.0 0 ...........TT...AG..C.A..A........GGG | ========== ====== ====== ====== ===================================== ===================================================================== ================== 33 37 95.0 36 GTGGCGGTCGCCCTCCGAGGTGGCCGAGGATCGCAAC # Left flank : GCTCGCCATAGCCGATGTGCCCCGGAGCCTGGCTTCCTCCAGGAACGCCAGCGGAGCCCTTCTGCGTTTGCAGCCGACAAGGCAGAGGGCTGGTCAGCCTGCGAGCGTCCGTTCTACCTCTCCCGGGACAGGGCGTAGGCTGTGGGTTTCCGGCCGCTGGATGGCTTCACTGCCCACGCCCTGCTCCGAGCCACGACCGGAGCCCTGGCCGTGATGGCGTCGGAGGTCTGGTCGCATTGAAGCCGAAGTTGATGTCGTAGCCTCTCCGGCGATCAGGTGCTTGCCGCCAACACTGCGCTGCGGACCGGAACCGGAGGCTCCGACGTTTGCCGCGAAATCCCCCTCGGATGTGGCTGTAACCTCCAGACTGCTTCGGAACCGGAAGAACACACGCGACACGCGGACCACACCGAAGCTAGATGCCCGAATCGACCAGAACTGTCACCTCCAGCAGGCTCCCTATACGAAGAGCGCTACGCTCTTTGCACTGTTCAGTCAGG # Right flank : GCTCTCGACTTCGGACTGTAGCTGCAGCCCGAAGTCGAGGCGGTCGGCCTATGGGACTGCCGAGGGGCCGTGCGCTGAGCTTGATCCGGTGTCAGTGACGGCCGTTACGGTCCGTGCCAGATGCAGAGTTCCAGCGGTGTTGTGGAGGGGGAGTGATGGCTGGCGGCGAGCAGCGGCTGTATGCGCACAGTCCGGGCGGTGCGTCGGGGGTGTGGCATTCGCTGGAGGAGCATTTGCGTGGTGCGGCGGCCTTAGCGGGTCGGTTTGGGGGTGTGTTCGGAGCTAGTCAGTTGGCCGAGTACCTGGCGTTGGTGCATGACGTGGGTAAGGGGTCGTGTGCGTGGCAGGACAGGCTGAGGGCTGTCGGTGTCTCGGGGGGGAGGGTGGGGGTTCCGCATAAGCACGCGGGCGCTGTGCTGACGGAGCAATATGTTCGACCGGCCGTGTGTGCAGCGGTGGTGTTCGGACATCACGGCGGTCTGCCGGACATGGAGCGGCTC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGAGGTGGCCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-58] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 114907-115522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070243.1 Streptomyces californicus strain FDAARGOS_1209 plasmid unnamed2 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 114907 37 100.0 35 ..................................... CAGTTCCTGGACCGGCTGTGGGCGATCGAGCACGA 114979 37 100.0 36 ..................................... TTCCCCCGCAGCAGCAGCACGGTGGGAGGCCAGCGG 115052 37 100.0 35 ..................................... GTCGTCCGGTCGAGCGTGCTGTCGTGGAGGCAGAC 115124 37 100.0 35 ..................................... CACCGCCCCACGCTCGTCGCAGTCGCCCGGGGGAG 115196 37 100.0 34 ..................................... CTCGCGTGGGTCCGGGCCAACCGGCCGTCCGAGG 115267 37 100.0 37 ..................................... ACCCAGCACGAACGCCGCGGACCCGGTGACGGACGCA 115341 37 100.0 35 ..................................... CACTGCTGGAGGTCGACCTCGATCGTTGCCGAGTC 115413 37 100.0 36 ..................................... TTTCCGCCGCAGTACGTGCCCGCCGGGGAGAAGCGG 115486 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 9 37 100.0 36 GTGGCGGTCGCCCTCGCGGGTGACCGAGGATCGCAAC # Left flank : AACTGCCGGGCTACCTCCCGTGGACGGTCACTTGATGGACCTGCTGCTGGCCTACGACGTCGACACCACCACTCCGGCGGGCAGACGGCGACTTCGCCGCGTCGCCAAGACCTGCGAAGGGCACGGCTTACGCGTTCAAAAGTCTGTCTTCGAGATCGTCGCCGACGACAAGACGGTTCTCCGGCTCCTCCACGACCTCGAGCAGATCATCGACACGGCTACCGACAGCATCCGCCTCTACCGACTGCCACCCGACGGCTTCAACCATGTCCAAACACTAGGCACCGCCCAGGTACAGCCTCACCGTGAAGACCTCGTGCTCTGACAAGCAAGCCGACCGTCCTCAAATCGCCCCAGACCTTCTATCTGCTTCGGAACCGGAAGCACACAGGCGACACGGGAATCGCACCGAGGCCAAATGGGCGAATTCGCCAGAAATGTCACCGGTAGCCCGGTACCCGCTCAACGAGCACTATGCTCTTGACGCAGGTCAAGCAAGG # Right flank : CGCCCTGACCCGGGGCGACTACCGCGGTGTCATCGCGGGTGGCGGCGATTGCGGCGGGAGCTGTAAACCCTGTCACCGCTGACGTGCTCGGGCCTTGTCCGGGGCCGCCCGACCAGTGAGCGAGGAACCCTGACCCGGTCCAAGACCTCGATCATCTGCGGGGCATCACCCCACTGACCTGGAGTGATCAGTAGAGCCATGGGCCGGCCGCCGCCTTCACCAGCGAGGTGAATCTTGGAAGTCAGACCGCCCCGGGACCGTCCGAGGCCCTCATCGGGGCGGTGGTGCCGGGGCGTCGTCCTTCTTTCGGGACCCGCGGCCTGGCCTTGCGGGCGCCGGCCTCATGCTGGTGGGCCCGGCAGGACGTGGAGTCGACGCCGACCATGCCCCAGTCGACCCGCCCTGCAAGGTCGGCGTCTGCCTGGACCGCCTGCAGGAGGCGGTCCCAGGTACCGTCCGCCGACCAGCGGCGATGCCGTTCATAGCCGGTCTTCCACGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCGCGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-15.60,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3296643-3296369 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3296642 30 96.7 31 .............................A TCGGGTTGCGCAGCATCCGGGTAATGACAGC 3296581 30 100.0 31 .............................. TCACCCGGCCGCGCCGGGCCCACATCCGGTA 3296520 30 96.7 31 ............C................. CGCCGTTCTCCTCCTTGAGGGTTCCGGCGAT 3296459 30 83.3 31 ...........TGG............T..A GCAGGGGCAGGAAGTCCAGGACTGCGGCGCC 3296398 30 70.0 0 ..............GC.T....CT..GAAT | ========== ====== ====== ====== ============================== =============================== ================== 5 30 89.3 31 GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Left flank : CCGACAAGATCCCGCCCCGCCTCCCCGGGGCGGTGGAAGTCCGTTCGCCGGGCGCCAAGGAACCGATCTACGAAGCCCTCGTCGAATGCACCAACTGTCGCCGTCCAGGCCCCCCGCAAGCCCTGCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACGGGCAGCGACGACACTGCCGCACCCACCCCGGACGAGGTCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAGCCCGTCTGACTCCCCGACCACCACACCCTCGTCGGGCAGGTCGGGCATACCGCAGCCCCGGGGCCCACGCCTGCGAAAGTCCTGACCACAGCTCTTCCACCGAAGCCGGGCCGATGAGACCGGCGGCGGGCAGAATGGCATCAGCCGAACCACACGTGACCACACTGCGGCAGAAGGCGAGATATGTCGGCTTCTCAAGAAGTAAGCAAAACCCGCCTTCCCACCACCTAAACCCCCAGGTCACGAAGG # Right flank : GCCGCTCCTCAGGTTCTTGCCGTGCTCACCGACATCCTTGCCGCCGTCGAGGACGGTGAGCGGGGGGCCTTGTGGAATCTCTCCGAAGGCGGGCGGGAGTTGGACGCCAATCTGGTGTGGCTGCCCGCCGGGGCCGAGGTCGGGGAGCATCAGGAGGACGTGCTCGACGTGTTCCTCGTCGTTCTGGAGGGTGGGGGCACGGTGAAGGCGGCGGGCGGCCGTGAGCTGGGGCTGGAGGCCGGGGCCGTGCTCTGGTTGCCGCGTACGTCCCGGCGCGCGCTGGCCGCCGGGCCGGACGGGCTCGGGTATCTCACCGTCCACCGCCGCCGCCCCGGCCTCGCGATCTCCGCGCCGAGTGCGGCGTACGAGGGTGGCGAGGGGCCCTGCATGCTGGACCGGGTCTGCCCCGAGTGCGGGCGGCTGTCGCAGGACCCCGCCCCGGTCTTCTGCAGCCGGTGCGGGGAGCGATTCCCCGAGAGGTGAGCCCGGCGGTGAGCCGA # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3387306-3387823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3387306 30 100.0 31 .............................. CGCGGGCCTCCGCGTCCACGGCGAGAGTGAG 3387367 30 93.3 31 ...A.........................G GTCCGTCGCTGCCGACGCCGAACCCGGTCAG 3387428 30 93.3 31 ...A.........................G CCATCAGCGGCACCCACGCGGGGCGCTGAGT 3387489 30 93.3 31 ...A.........................T CGCGGCGGTCATCGGGTTGCTGGGTCATGCG 3387550 30 96.7 31 .............................G GCTGGCACCCGCACATCCACGCCATCGTCCT 3387611 30 96.7 31 .............................T CCCAGATGGCGGTGCAGCGGAGCCTCGCCGC 3387672 30 100.0 31 .............................. GTGCCGAGGCCGGCGTGCGCTGTGATCTCGC 3387733 30 93.3 31 .....................A......T. CCGGCTCGTCCAGCAGCTCGTGGTAGCAGGG 3387794 30 86.7 0 ...........A...........AA....T | ========== ====== ====== ====== ============================== =============================== ================== 9 30 94.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Left flank : AACCGGGAGGTGTACTACCCGAACTGGGCAACCGCCGAGCCGGGCGAGCACGTGGCCGACGTCGCCATCCCCTTCCGCACCGGCTCGATGCCCGGCCTCTGAAAACCAACCGACGACGGTCGGCACACACCGCAGGTTGCAACCGCCGACCTGCGCAAACACCTCGGGAGACCGCCATACCGGCCTCGAAGGAATAGCCGCGCCCCAAGCACACACCATCAACCTCCGCCACCCCCTCAAACCGTCGAACCCGTCGAACCCCAACCACGAAGCCCCTCCCGAAACGGGGGTAGACACACCGCACACCGACGCCCAAAGCCACGAAAGACAGAGCCGCACCTCTTCCATCGAAGCCGGGCCGATGAGCCCGGGTGGCGGGCAGAATGGCATCAGCCGAATCACACCTGTGGCCACTTTGCCCCGGAGAGCAAGATATGCCGGTTTCTCAACAAGTTAGCAAAAACCGCCTCCCCGACACCTAAACCCGCAGGTCACGAACA # Right flank : TGCTCCAGGTCCGGGCCGGGGAACAGGAGGTCGTGGTCCCCGCACGCGGGTTCCCCGCCACAGCGGAAGGCCGCAGGCAGGGCAGTCCCCGCCGTACGCGGCGGAGACCGCTCGCCGCCGCCTACGAACGGGACCGGCGGTCGCCCGTACGTCACCGCGCCCAGCGGACTACGTCGCAGGTGCCGGTTGGCCACCGTCTTCCGCCTGATACGCCCCCGGGGCCCGCTGGCTAGCGTCGTCCTCATGCGTATCGGACTGCTCGGCACCGGAAATGTCGCCCGCGCCCTGGCCCACGGCTGGCGCGCCGCAGGGCACGACGTCCTCCTCGGATCGCGCCACCCGCAGGAGCGGGGTGACCTCGGTCTGCCCGTCGCGGGGCTCGGCGAGACCGCCGCTCGCGCGGACGTCCTGGTCAACGCCACCCCCGGTGGCGTCTCTCTGGACCTGCTCCGCTCCATCGGAGCGCCGGTCCTGGCCGGCACCCTGCTGATCGACGTCGG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCC # Alternate repeat : GTGATCCCCGCGCACGCGGGGGTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3411772-3412045 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3411772 30 93.3 31 .......T................T..... GGTGCGGGGCGGTGCCCGGGTGGTCGACGTA 3411833 30 93.3 31 ........................T....C CCGCCGCAGGAGCAGCCGCCGTGGGCGTGGC 3411894 30 96.7 31 ............................T. CCCCGGTCGCCCACCGCCGGTGAGGCTTCTG 3411955 30 100.0 31 .............................. GCCTCGCCGCCGTGATCGAGCAGGTGGTCGT 3412016 30 86.7 0 ...........T...A.........C...T | ========== ====== ====== ====== ============================== =============================== ================== 5 30 94.0 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGGCAAAATCCCACCCCACATCCCCACGACGACAGAAGCCCGATCACCGGACACCAAGGAACCGACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGACCACCCGGGGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCCACGACAGCGACCCCACCACCCCCACCCCGGACGAGATCGCCGCCGTCAAAGCCCACATCACCAACCTCCGCAACCTCCTCAAACCCGTATAACCCCCGCCCCAAGAACCCCCGTTAGGCAGAACAGACACACCGCATCCCCAGGACCAGCCCCACAGAGAGCAGAACCGCAGCCCACCCGCCGAAGCCAGACCCAGATAGGACCGGCAGCGGGCAGAATGGGCAACAGCCGAACCACACGTGACCACTTTGCGACGGAAGGCGAGCTATGCCGATTCCTCAAGAAGTAAGCAAAAACCGCCTTCCCGCCACCTAAACCCCCAGGTCACGAAGG # Right flank : TGCGCCCCGAGCAAAGTGGCAGGTCACACCCCGCGCGGGTACTCCCCCTCCCCCGTCCCGATGATCCCGCCCGGGTCCCGCAACCACACCTGCTGACCCCGGCCAGTCACCGTCAACCCGAACTCCTCCGCACCAGGGCGACCGGCCGACTCGTACTCCCACCAGGTCTGCTCGATCTCCTCCCACAGCAGCCCGATCCCGTACTGCCACACCTCCTCTCCCGAAGCCGTCGAAGCGCCACCGACCTCGCTCGTCACCCACACGCGCACCCCGCCACCGGCGACACTCTGGTGAACCATCCGCACACCGGGCAGTCGCGCCCCCGCGAACAACGCGAACCCGAGGTCCAGCAACCGGGCCGGGTCCAGACCAGCCGCCCGCGCTCGCCCCCTCCCCCGTACCTCATGCAGATCGGGCACGCGGTGCGAGCGCATCGGCATGTACGTGGCCCCGCCGCAGAACGGCCCGACCGCGCTGCCGTCCCCCTGAACCCGTAGCCG # Questionable array : NO Score: 3.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 3892013-3892225 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 3892013 30 100.0 31 .............................. GTAAGATCACCATCCGGAATGCGGCGAACGT 3892074 30 96.7 31 .............................C TACCCGCAACTTCCGGGCGGTGGGCGGCTGT 3892135 30 100.0 31 .............................. TGGAGTGCCTGGTCTGGGACATGGACGTCAA 3892196 30 90.0 0 .........................CA..T | ========== ====== ====== ====== ============================== =============================== ================== 4 30 96.7 31 ACGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CTGTGCTGATCACGACGATCGGCACGGTGCTCGGCACCTGGCTGGGCCGGACGAAGACCACGGTGCAGGAGATCCCGGCGGAGGGGATGGACCCGGCGCCCGCGCAGCCCGAGGGCACGTGGACGGTGTCGCCCGAGATGTACCGCTGGTTCCAGGACCAGATGGCGTCGATGCACGCCCGCATCAGGACCCTGGAGGACGCGGAGGCCGAGGCCCGGACCCGGGCGGACAGGACGGACCGGCTGCTCGGCCTGGCACTCGACCACATCAGTCAGCAGGACTCGCGCCTGACCGCCGCCGGCATGCCGCTCGTCCCCATGGACCCCGAGCTCGTCGCCGCCCGCGACGCCCGATGAAACGCCCCCGCCCCGGCTTCGGCCGGCGGCGGGGGCGTCTTCGTACATTCCGGGGCCGTGGCGCAGGATCCACCGGCTAGCATCACGTGAGACAAACTTGCCGATTCTCGTGCTGGTGGCAGAAAAAGTCGCAGGTCACGAACT # Right flank : TTCAGACTTTCCGCAGGGGCGGAACAGTACGACTTCCCACTCTGCCGAGTGAAGCGCGCCAGAATAAACAGCGCCATGGGCCCGTAGGCCGATAGCAAGACTCCGTGATCACCAAGACCATGCGGGGCCTCGCCGCCGCCACTCTCGCCATCCTGCCCCTACTCTCCGCCACCCCCGCACAGGCAGTCCAAGCCCTTCCTCTGGCCGATGCCATCCAGGAGCTCCCGCTTGCCGTTGAGTCCCGCGAGGGCTACCAGCGCACGTCGTTCAAGCACTGGGTGGATGAGGACCGGGACGGCTGCTCCACCCGGGCGGAGGTGCTGATCGCGGAGTCCCGCGTGCCGGCCACGGTGGAGCCACGCTGCAAGGTGCTGGCGGGTCAGTGGTACAGCTACTACGACGGAGTCACTCTTGAAGCTCCGGGCGGCCTTGACATCGACCACGTAGTCCCGCTGGCCGAGGCTTGGGACTCCGGGGCCTCTGGCTGGACGGCGGCCCGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4623094-4622638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4623093 30 100.0 31 .............................. CGACGGCATGCGCCCGGCAGAACCCGTACGC 4623032 30 90.0 31 ..A...............A..........C ACTTCATGACCTCGCGGACGGTGGCGCCCTC 4622971 30 100.0 31 .............................. ACGGGTTGTCGGCGAGCTTGAAATGCCATGC 4622910 30 96.7 31 ...........T.................. GGCGGCAGTTGGGCGCCTCGGTCGCCATGAC 4622849 30 90.0 31 ............AT...............T CGTGGGTCGGCCAGATGTCCATGGCAGGCGT 4622788 30 93.3 31 C............................A CGCTCACCATCGGGGAAATGGCCCGGCATCT 4622727 29 90.0 31 ............AT...........-.... GCGACAATGGTCGGCGTACCTGTACGACGGT 4622667 29 80.0 0 ........-..C.GG......C.....T.. | T [4622653] ========== ====== ====== ====== ============================== =============================== ================== 8 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CGTCGGGCGCGGGTTGAGCTTCGACCGTGGCGCCGGGAGGACTTCGTCGCCGACCTGGACGATCACTTGATGGACGCCCTCGGGGCCTGACAACGGGCTTCGCTCACTGCTTCCTGGCCACTCCATGGCAGGGAATGACGAGTTCCTTGAGCCGCCGAAGCTCCGGTCAGGAGTCACGTGCACACGGGCCCTGGGGGCGAGGGCCGAGTCGGCCGACTCAAGGCACCGGTAGTGGTCGTCGTGGTCGAAGACCTCACCGACGTCGGCCACCAACGTGTTCGCACAGCGGGCCCAGAACACAACGCCCCTGGCCGACACCTGCGGAAGGCCGGGCCGCTTCTCTTCCACCGAAGCCGGGCCCACGAGGTCGACGGCGGGCAGAATGGCATCAGCCAAGCCACGCGCATGAACTTTTTGCGACAGAAGGTCGGATATGCCGGTTTCTCAAGAAGTGAGTAAAAACCGCCACCCAGCTACCTAAAACCCCAGGTCACGAAGGG # Right flank : CGGGTGTTCGCGGTACCGCTTCGGCCGCCCCGTGTCCCGTAGACGCCCAGGGGCACTCGGCGCGACACCGGGCCGCCCTCCCAGTGCCCTACGGAGAGGCGCCCCGGTCGCTCAGCCCAGCCCCTCCTCCACCAGGGCCGCCCACTGCGCCACCACCCGGGCCCGGCGGGCCGTGTCGTCGGTGAGGAGGTTGGCGAGGCCCAGGCCGCGGGCCATGTCCAGGAGGCCCTGGACCGTTTCGCGGGCGCCGGGGCGGGACTCGTCCGCGCCCAGGAGTTCGACCGCGATGCGGTGGGTCTCGCGGCCCACCCGCGCCTCCAGTTCCGTGACGCGCGGGCGGAGCTGGGGCTCGTTGGAGGCGGCCACCCAGAGGTGGAGCGCGGCCCGGAAGAGGGGGCCGGTGTAGAGGTCGACCAGGGCCGCGACCACCTCCGCGCGGCCCTGGACGGGGAGCGCGCGCAGGGCCGCCGAGCGTTCCTCCGCGACGTACTCCACCGCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 4626714-4626380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 4626713 30 96.7 31 .............................C GTGATGGGCATGGCGCGAGGGATGGCGCCGA 4626652 30 100.0 31 .............................. AGACGCCTGGGGACACCCTGAGCGAGCACGT 4626591 30 96.7 31 .........A.................... TCGCGGTGGGCCTGGTCCTCCTCCTCCAGGG 4626530 30 100.0 31 .............................. CAGCCGCGCTCGTGAACTGGCGGATCACCAC 4626469 30 96.7 31 .............................C TCGACGGCGAGTCCCTGGCGCTGCGCCTCTA 4626408 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : AAATCCCACCCCACATCCCCAGGGCGACAGAAGACCGATCGCCGGACACCAAGGAACCAACCCACGAAGCGCTACTGGTCGAATGCACCAACTGCCGCCGCCCAGGCCCCCCGCAAGCCCTCCCCGACGGCCTCTGCCGCCCCTGCCACCACGCACACACCACCGGAAGCAACGACACCACCGCACCCACCACAGAAGAAATCGCCACCGTCAAAGCCCACATCGCCAACCTCCGCAACCTCCTCAAACCCGCCTGACCCCCATTCGACAGCCCGCCGCTGGGCTGGGCTGGCACACCACACCCCCGGGGGGGGCAACCCCTCGGAAGGCAGAACCGCGCCCCTTCCACCGAAGCCCGGACGATGAGAACAGCGGTGGGCAGAATGGCATCAGCCGAACCACACACGCGACCCCTTTGTGAAGGAAGACGAGATATGCCGGTTTCTCAACAACACAGTAAAAACCGCCTCCCCGTCACCTAAACCCGCAGGTCACGAACA # Right flank : CGCACCATCGCTTACGTGAGATCACGGCCTCGAAGCCTGGAAGGGCGGAACCTACGGCCCCTGCTCCGGCGGGTTCCGTGACCATCCGAGCCCCTGCCCGCCGGCCCCGATCCGGCGCTCCGGAAGGCCATAGATTCCGAAAGGCGGGAACAGGTCGACGCGGCGCGGGTAGTCGCCCTCCGCGCACGCCCGACACAACAGATCCCGGCCCCGATCGGTGTGCCGCACGGCAGTCACCGGAGCGCGCCAACATGCCTCGCACGTGCGGACATCCGTGATCGACAGATCGGGGCTCATCCAGCACCCTCAAGCGCAGTGGCCCCCTCGTGACACGGACAGGCGCACGTCGGCAGACGGCACAGGGCATGCACACCGGCCAGGTCTGTCACCAACGCGCTGCGACACACCACGCTGCACGGCCCGTCCGCACCGGCCGACAACGCGTCCAGCGCTACAACCGGCTCCCCGGCCTCATCGCCCCCGGTGATCGGATCACCTCG # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 4631328-4631116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4631327 29 96.6 32 .......G..................... GTGCCGATGGGGTCGAAGGGGCTGTGCATGAA 4631266 29 100.0 32 ............................. GGAGTCCTCCGCCTCTACCGGCACATCACCAC 4631205 29 100.0 32 ............................. CCGTACAGGATCGTCTCGCGCCGACAGTGGTA 4631144 29 82.8 0 ............T.A.......C.CC... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.9 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CGCATCACCCAGCCCAGCGAGATCGCCTTGTACACGAAAGCGTTCGAGGAACTGCGACAGGCTGCGGTGTACGGCGCAGAAGCACGCGCCCTGATCGTGAAAGCCATCGACGCCCTCGGCTGGCCCGAGCACCGTGCAGGGCGATGAAGTTACGAAGCTACGGTTACGTCCCCGAGGGAGTGGGGGTAGCCCCAACTCGGGCCGATTGATCTGGTCGTGGCGACGGCGCGTCATGCGCATACAGAGCTGTCGCGTCGATGCACTCCCCCTCAGCGCCAACGAGATCGTCACCGCCCCCGCAAGGCTCCGACCTACGATCCGGTCGCGGCTGCACCTCCTCGCAGAAACCGCGAGAAGCCCTCCCCTGCAATGAGGGACGTGCAGAATGACTTCTGTCGAGCATCAAACAGGTCGATTCACCCCGAAGGTCCTGCATGACCGTTTCTCAAGAAGTTAGCAAAAACGAGCCTACCGCCGCCTAAACCCGCAGGTCACGAACA # Right flank : TCCACACCCCCACCCGGCTCCACCCAGCCGGCCAGCCGGGCGCCCCTCCCCAGTCGCGATACGTACCCCCACAGCCCCCGTCCACCCGACAACACCGCAGGTGGCGTGCCCTATGGTCTCCGTTCATGAGCCGAACCACGCCGCCCCGCCCGGTGAACATCGAGGCGCTCTTCCCGAAGCTGGGCGCGTTCCGCGGTACGACGACGCGGCTGCACCCTCGGCCCGGCCGTCCGGACGCGGCGGCCAGTTCGGTCGGCGGCCCCATGCTGTGGCCGGCCGACGAACCGTGGCCGGTCTGCACCGAGCCGCACAAGCGCAGCAGCGGGTACCGCATCGCGGACGTACGACGTGAGCGCCAGGTGCTCGCGGACGCCTGGGCCCGGGACCGCCCCACCGATGAGGAGCGGGACCTGCTCAAGGAGCTGGGCCGCAGGCACCGGCAGCGCGAGATCGCCGACACCGATCCGATCCCGCTGGTCGGCCTGGCCCAGTTGTATCGG # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.10,-13.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 4634741-4634404 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070242.1 Streptomyces californicus strain FDAARGOS_1209 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4634740 29 96.6 32 .........A................... GGCTACCAGGCCTGGCCGAAGTACACGAAGTA 4634679 29 89.7 32 .C......................AC... CAGCCAGGGAACGCGTACCTCAGCGCGAGCGG 4634618 29 96.6 32 ............................T CCTCGGCTGCCTCCTCCGCGCCGTGTTCCTCC 4634557 29 100.0 32 ............................. CCGGCTGGGTCGACGTGAACGTTCCCGGGTGG GGG [4634536] 4634493 29 100.0 32 ............................. CCATCGGCGGCCGCCCTGCGGAATGGGTCAAG 4634432 29 89.7 0 .............A..........CC... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGCATGCGTGATGGCTCCTGTGACGGACACGGGGACGGCCGACGACCGGGGAGGGAAGAGCCCTGCGCGAGCGAGCGCCGGGCGGTGGCCGCGCGATGACCGCGAGTCCCCCGGCTGCCGGGTGGCCGAAGTTGACGCGTCGAAGTCTCGCCGCGCACCACCCACGGGGTCGTCCCCCCAGCAGCCGAACCACGCCCTGCCCGAAAGTGCCACACCCCGCCGACCGACACCCCTCGGAAGTGCTACCGCCGGGCATCCTTCTTCCGACCGATCGCGGCGGCTGGGGGCGGGGGCCGGGAGGGGCTGCCGGCAACAGTCCGGGGCACGACCGAAGTACGGGACAGGGCGCTGGGTGAACTGGCAGGCTGGGAAGCAGATCCCGGGGGTGCTGACCTCGGCCTACCTGGCAGCCCATTCGAAACTTGAGGCCACATATGCCCGACTCTCAAGAAGTTCCCCAAAACGACCCCTCGGCCGGATAGACCCGCAGGCCACGAAGG # Right flank : CGGGCCACCCTGGCCGGGCTACGCCGCCCAGTGCTCGCCGCGCGCGGGGACGGCCCCTTCTCCGGCGGGATGAGCCGGGGGCGCAGGGTGCGCCCTGCGGGCCGGAATCACCTGGGCCGTGGCACCCCCGCCTCAGCCCAACCGGAGTGTCGGGCTGAGGCGCGTGCTGCGGTCAGTGGCCGCATATGTTGCAGGGGTAGGCGGTCTGGCTGATGCAGTTGCCGTGATCGTCGTAGATGTAGATCACGGACCTCTGTCCAGGACAGCCGGGGGTGCTAGTGCACCCGATGGCCTGGTCTTCTTGGTGCCCCATGGTGATACCTCGCCTTCTGCTCGGAGGTGGGTTCCCACGTCCTCCGGCAACCAGCGCAGAACCAGAACCACCGAAGCGGGCGGCTCGGTGCAGTGCGGCTGGTGTCTCGCCAGAGCGCCCGGCCGTCCGGGCAGTGGGGGCAGAGCGGCGGCTGGTCCACGGCGTCCTCCTGGAGCAGTTTCGAGTC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [13.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.15,4.77 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //