Array 1 96493-95262 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZYR01000004.1 Enterobacter roggenkampii strain 35731 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 96492 28 100.0 32 ............................ GCAAAATCAACATCGCCATTTCGAGGGCTGAG 96432 28 100.0 32 ............................ AGCGGAAAGCCACTCAAAGAGTACACACTAAA 96372 28 100.0 33 ............................ GGCTAGGCTCAGCAACGGTCGTCCGGCGTTCAT 96311 28 100.0 32 ............................ CGGCGCTGGCATCCTCCGCACCGGTGACGACT 96251 28 100.0 32 ............................ GCGTTATATCACGTGGTGGAAAATCTTCACAG 96191 28 100.0 32 ............................ GTTAGGACTGAATAAGATTTTCCGCGAAAAGA 96131 28 100.0 32 ............................ TGTATGACGACAGGAAGCTCACCCCGATAGAA 96071 28 100.0 32 ............................ GCGAGGGATGCAAAGACCGACTCACCTGATTT 96011 28 100.0 32 ............................ AGGTGGGGTGGCAGAACATGGACACCCCGAGT 95951 28 100.0 32 ............................ TACTTCGTCTAATAGACAAAAACGATCGAAAC 95891 28 100.0 32 ............................ CGTTTGTGGACCGCGGCAAATGCAGGTGCCAG 95831 28 100.0 32 ............................ CCGGCCCGGACCACCTCCCTGCAGAGCCCTGA 95771 28 100.0 33 ............................ TGGAGCCTTACGGGTTCACCAGTGCCCCGCTGG 95710 28 100.0 32 ............................ AAATTTCGGCGATTCTGGTTTGTAGAGCTGAA 95650 28 100.0 33 ............................ ATTCGACACCGCGATAGAGCGTGCCAGAAAGAA 95589 28 100.0 32 ............................ TGGAGCGGCTGCGCACTGCTCGCCACTCTTTT 95529 28 100.0 32 ............................ CATTGGGCACGGCCTTCATGGCATTTGACCCG 95469 28 100.0 32 ............................ GTCCGGGTTATCAGCCCTGCCTATTGATATCG 95409 28 100.0 32 ............................ GCTGGAATCAAAGTGATGGAGTGAGTATAAGG 95349 28 82.1 31 A...A......C...C......C..... ATAGAAAATAAGGCCTAACAGTCCTCGGACC C [95324] 95289 28 71.4 0 ....A...T..A....A....CCT...G | ========== ====== ====== ====== ============================ ================================= ================== 21 28 97.8 32 GTGCTCTGCCGTACAGGCAGCTTAGAAA # Left flank : AACGGGCCACGCGTTCGCTCTCGTCGGGCGTTAACGTCCGTCCCGCGCTTTTGCGGCGGGCCACGTTACGTTCGTTGATACCCGTGACACGCAAAATGTCCGCTTTCGACATGGACGTCCACTCGTGGATGTTGTCGAGCACGCTGACGGGTAATCCCTGATTGAGAAATTCAATCAACCGCATACCTCGGTTGGCGGGTAAACCGGCGTAACGCCAAAGTGCGTTATCAGCAGGTTTCTGTGCGGGGATCCATGTTCTCATGTAACCTCCTGAGTGATGTCATTTGTCATAGTTAAGTATAGCCATTTGTCAGGGTGGGTGGAATGGGTGTTTTTGTGTGGGGGATTAATGCGAAGAAAGGTGTTTTGACCCTAATTTTTAGCGTTTGTGTAATAGATTGATTTTAAATGATTATTTCTGGTGGATGAAAAAGAGGGTGAGAGAAGGATTTTTAGCTTTTTTTGTATGCAAATCATAAGGGTGTGGAGATATTATTTCA # Right flank : CTGGAACGAACGGCTAATTAATTGTTCAAATAATCAACTGCGACACAAAAAAATAAGGCCGGGAATATCCCGGCCTTATTTAATATTCATCTGCCATTACAGGCGAAAACAATTAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAAAATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGCGCAGTTACCACGTGACCGTTTTCCAGCTCTACGCGAAACATGGTATTAGGCAACGTATCAAGTACGGTACCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCAAGTTTTGAACCGGCAAGATAATGCCGAAATTCATCAATTAAGTAAAGAATTGCGCGTTTGAAACGCAGCAAAACAGTTTCGGCGCATTGCCCAAGCGTCACGGTACAACCGAACGGAAAGCGCATTCGTAAAGGGGATACAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 107341-105991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZYR01000004.1 Enterobacter roggenkampii strain 35731 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 107340 28 100.0 32 ............................ AGCATTTGTGGGATGCGCAGCTTCTGGTTTAG 107280 28 100.0 32 ............................ CCAGCGTTGGGATACCTTCGGTGATGGTGATG 107220 28 100.0 32 ............................ TTCTCGGTGATATCGTTTTCCCCAACAGAAAT 107160 28 100.0 32 ............................ CCGAGCTCCGCAAATCATTGCCGAAGGGGGCG 107100 28 100.0 32 ............................ TCTGTACGCCTGCCGGTTCGATATCTTCCAGT 107040 28 100.0 32 ............................ GATAATCAGCTGCCGCGTAACGCGGGCTGGAA 106980 28 100.0 32 ............................ CGGTTGATCAGTTCTGGATAAAACAAGGGATA 106920 28 100.0 32 ............................ ATCAGCACTTCTGAACAGTACGCGACGGCTTT 106860 28 100.0 32 ............................ TCGCGCTCATACTGCTTTTGTGCCGTTGTGCT 106800 28 100.0 32 ............................ AGCGGTAATTTTAATAGTCAGGCAGGAGTAAG 106740 28 100.0 32 ............................ AAAGCCGCTTGCTCTGCCGGGGTCATACCCGC 106680 28 100.0 32 ............................ AACCACCGGGCACGTATCGCTCAAGCTGCTGG 106620 28 100.0 32 ............................ TGTCGATACTGAGATGCAGTCGTCAGAATCCG 106560 28 100.0 32 ............................ GTTGTCGCGGCTGTGCTGCACCCTTATTTCGC 106500 28 100.0 32 ............................ AGGCTGCACAAGTTCCCCAGCAGCAGTCTCCC 106440 28 100.0 32 ............................ TGGCACAGAAGATTGATGGATACAGCTTCGAC 106380 28 100.0 32 ............................ TGCTCTGGCCACGCCAGGCTGTCTCCGTAGCA 106320 28 100.0 33 ............................ TATGCCTACGTATTCCGTACCTGGATACATAGA 106259 28 100.0 32 ............................ ACTATTTCCCAACCCTTGCGCACCTTGGTGAA 106199 28 100.0 32 ............................ TATGAGGATCGTGTTCGCGGGGCGGATCATCG 106139 28 100.0 32 ............................ ATTCACCAGATAAACGACATGCGCGCCATCTT 106079 28 100.0 33 ............................ AAGCGGGGTAGCAGAATATCGAGCCAGCGCAGT 106018 28 78.6 0 ...........C.........AC.ACT. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.1 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCCCGCAAACGCAGCCCGTTTGCCGCTGTCTCGGAGCCTGGCTGGAAGAGGTGAAATCCGGCCTCACAGAATCAATGCGTGATTTTCAAGTGGTGGAATTTGAGGACGAAGCGGAACAACCGCGACAAAAAGAGTGGTTGCTGGAAGATACAGAAACGAAATGCGACTACTGCCGGGCGTTAAACCATGTGCTGCTGGTGTCGCATTTTGACCGAGATATGTTGCCGCACCTGACGGGGTTGCTGCATGACATTACGCATTCAATGGCCGCGGATGTCGTTGCACCTCAAAGTGCAGAAACGGTAATTCATATTATTTCCTGAGTGCTATCTGAGGCGTCGGGGGTGTTCCTCTGACGCCATTGGTTTAAACCCTTTTTTCTGATGCTTACGTAACCTTTTGATTTATATAATGCGAATTTACGAACCAGAAAAAAGGGTTTTATGCGGGAAAGTTGATTATTTTCTTTTTTAACAATAAGATGGCGCAGTTTCCTTTCA # Right flank : AAAACAACTCTCTAAAACATTCAGCTTACCTATTTAAACTTAATACGATCAAACCCACATTCTTTATTTTTCGCAATAAATAAAAAATTCATTCACATACCAATTATATTCTAATGAATATATTGTTCGTAAAAATAATGCATTAAATGGAAAAGTGATTTTTCACTTTATTATCGCGGTAATTACTCTTCATTTGATACCCGTCACATTTGTTTTCATCTTATCTTCGATAACATACCGCGCATTCAACACCTTGAAATAAAAGCCCTTGCTATGTCCGTAAACAGCATCACTCCAACAGACTTAAAAACTATCCTGCATTCAAAGCGCGCCAATATTTATTACCTGGAAAAATGTCGCATCCAGGTGAATGGTGGGCGCGTTGAATATGTCACCCAGGAAGGCAAGGAGTCGTTTTACTGGAATATTCCCATCGCGAATACCACGGCAGTGATGCTGGGAATGGGAACATCCGTGACACAAATGGCAATGCGGGAGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 123420-122368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZYR01000004.1 Enterobacter roggenkampii strain 35731 contig4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 123419 28 100.0 32 ............................ GTACAGGCAGAGGACGAAGGCATGGCGGGCAA 123359 28 100.0 33 ............................ CTGCGTGAGTTGACGAGTAAGGACATTATCGAC 123298 28 100.0 32 ............................ TGACGGCGCTGCTCCTCCTGTTTTGCTGCTGC 123238 28 100.0 32 ............................ ATCACCGTCACGCAGCATGCGGTTACCGATAA 123178 28 100.0 32 ............................ TGATTACCCTCCAGAAAATGGTTTACTGATGC 123118 28 100.0 33 ............................ ACTCGTACTACAACCACGGGCGGTTGTATTGCT 123057 28 100.0 32 ............................ AGACGGTCATCATCGTTAGCGAGCTTGCTGGC 122997 28 100.0 32 ............................ AGTCATTACGCGTGTTTCCAAACGTTCCGGTC 122937 28 100.0 32 ............................ ATCACCTTTTACCCCCCAGTCAGCAAAGTTAA 122877 28 100.0 33 ............................ GTTCGCCCCAGGGTAAGAGCCATCAGCACTGTT 122816 28 100.0 32 ............................ CAACTCCGCTATACCCGGACGCAACCGCTGTA 122756 28 100.0 33 ............................ ACAGTCGTTAGACATCTGGCACTTGTCGCAGAA 122695 28 100.0 32 ............................ ATGTCGCCTGTATCAAACGTCAGGGCATCCGC 122635 28 100.0 32 ............................ TAAGCCGGGTTTAGCAGATTTCAGCGCTACTC 122575 28 100.0 32 ............................ GCCAAGATATTCTGGGCGCTGGACACGAGAAT 122515 28 100.0 33 ............................ CAGGACAGCGTTGAATTTAAGAAGCTGGTCAAG 122454 27 96.4 32 ..............-............. GCTTCGAGCGATGCCAGCGCAATACGCGCCAA 122395 28 96.4 0 ........T................... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGGTTGCATAAGCTGTTTGGTGGGGTGGGCTTTATCAGCGGTATGCTGGTGGAGAAAGGGCTGCCGGGGTTTATTGCCTACGGCGTGTTGATTGGCGAAGTGGTGGCGCCGATCCTGATTATTGTCGGGCTCTTTACGCGCCCGGCCGCGCTGGTGCTGGCGTTTACGATGATCGTGGCATGGCTGATGGTGGGATTGGATGAGACATTCGCGCTCGACAAGGTCGGCGCATGGGCGATTGAAAGCCTGGTGTACTTCTTTATCGGCTCGCTGGCGGTGGCGTTTTTAGGGGCAGGGCGGTTTGCGCTGGGGAAAACACCTGCGTGGCGGTAGGGGTTGGAATCTGTTCCGAGGGAAGGGGTCTACGGACCCTTTTTTATTGGTAAGTTTTAAGTTGTTGATTTCAAAACGGTGAATTGTTGGTGGTGAAAAAAGGGTTTACGGAGAATTTTAGGGGGATTTCTTTATATCACAAGAAGATAGGTGTAGATTGTTCCA # Right flank : GCACTTCAGCCGGGTAAGCGTCGGTGGTTAGGGTCGAATGCCGAACAGGCAGTAGGCACAACGTAGGCCGGGTAAACGCAGTGCCACCCGGCAAAAAAGCCCGGTGGCGCTGACGCTTACCGGGCCTACGAACGAACGTTTATTGTTTATGCGAGGACCAGATCGCCCTGCGGATGGCACGAGCACGCCAGCACGTAACCCTCGGCAATTTCCGCGTCGGACAGCGTCATGGTGCTGGTGACGGTGTACTCCCCGGAAACCACCTTTGTTTTACAGCAGCCGCACACCCCGGCACGGCAGGCCGCCGCCACCGGCACGTTGTTGCTTTCCAGCGCCTCCAGCAGCGTCGTGCCCACGCGGCCAAAGAAGGTCTGCGCAGGCTGCAGTTTGGTGAACTGAATCCCGCTGGTTGCCGCTTCCGCCACCGGCGTGAAGAACTGCTCTTTGAAGAAACGGGTCACGCCGAGCGCTTTCACTTCTTCTTCCACGATAGCCATGTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //