Array 1 81808-78857 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPZ01000003.1 Candidatus Nitrospira nitrificans isolate COMA2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 81807 36 100.0 40 .................................... AAAGACTACCTACTATCCAAAGTGCTATCGTCGCTTCGTC 81731 36 100.0 36 .................................... GACCTTGCGGACGATGGCGATGTTGGACGACAGATC 81659 36 100.0 37 .................................... AGCACCTTGTCAAAGCGACGGAACGGGCGAAGGCCGA 81586 36 100.0 38 .................................... AAACAGCGTGGCATCAGTCTCAAGATATCAGTGGGCCT 81512 36 100.0 36 .................................... AAGCAAGACCGGGAAATGAACGCCTCGAAATATGAG 81440 36 100.0 36 .................................... GAGCGGACCAAGCTGGTGTATGAGCTGGGCAAAGAA 81368 36 100.0 37 .................................... TCGCAGGATGTTATTGAACTCTTGCGTCCGCAATCGG 81295 36 100.0 37 .................................... CCGAACCTGGGACGGCTCGACCACAAACCCATGCTGC 81222 36 100.0 36 .................................... AGTTAACCCGCGCTCCAGGTAGTCACGCATCCAGAC 81150 36 100.0 37 .................................... AGAATCTTAGCCAAGTTTTTTGGGCCTAATACCCAAT 81077 36 100.0 37 .................................... AGATCAGCGGGCGTCATACTTGTTTAGGCTCCCTCGG 81004 36 100.0 36 .................................... CACACAGGGCCAACTGGCTCACCACGTTCGCCGCTG 80932 36 100.0 35 .................................... CCAATGCCCCTGCATCACATGGATCACGATCTCAG 80861 36 100.0 37 .................................... AAGCACATCGGGTCGATCGGTCTAGCCAAGCTGACCT 80788 36 100.0 38 .................................... TTCCTGAATATCCCTGCATCACATGGATCACGATCTAG 80714 36 100.0 36 .................................... CATCGGATTCAAGCCAGCGGGTTGCATCACTGGTGC 80642 36 100.0 37 .................................... AACCATTTTGACAACTAGCGCAAATTTCGGAGAAACG 80569 36 100.0 37 .................................... AGATCAGCGGGCGTCATACTTGTTTAGGCTCCCTCGG 80496 36 100.0 36 .................................... CACACAGGGCCAACTGGCTCACCACGTTCGCCGCTG 80424 36 100.0 35 .................................... CCAATGCCCCTGCATCACATGGATCACGATCTCAG 80353 36 100.0 37 .................................... AAGCACATCGGGTCGATCGGTCTAGCCAAGCTGACCT 80280 36 100.0 35 .................................... TTCCTGAATATCACCGAAGCAACCGCAGGGCCTAT 80209 36 100.0 36 .................................... CATCGGATTCAAGCCAGCGGGTTGCATCACTGGTGC 80137 36 100.0 37 .................................... AACCATTTTGACAACTAGCGCAAATTTCGGAGAAACG 80064 36 100.0 40 .................................... GGGTACATGCTCTCAGGCACCTGGTCAAGCACCATATCTG 79988 36 100.0 38 .................................... CCGCGTGTCGTCTCAGTCGGAACCTCTCCCACCTTGCT 79914 36 100.0 36 .................................... TTATACTGTGATTGTCGCTTCTCTTCAGGCTATGGA 79842 36 100.0 40 .................................... CCCGATACAGGATCGAGCGATTGAAGATCGACCGTCATAG 79766 36 100.0 37 .................................... CACCACAATGCCAACACGGGATTTCAGTGCTATTCTG 79693 36 100.0 37 .................................... GGCGTACTCCAAATCCAGGCGGACCTCGATTTCCTTG 79620 36 100.0 37 .................................... AACGCCTCGCGCACGATATAGTGCCCCGTCGCCTCCT 79547 36 100.0 37 .................................... GCTTCCCGCTTGTCGCCGGTCTTAAGGCTGACCCAAT 79474 36 100.0 36 .................................... GACGCTAGCGAGGGCCGATTTCTCAACACCGTTCGG 79402 36 100.0 37 .................................... TGCACGGTGGTATAGGAGTGCGTGTGCGCGGGAAGCG 79329 36 100.0 37 .................................... GAGGCTGCCTGTGCGTTTTGTTCGTCGTCGTCTGGAT 79256 36 100.0 38 .................................... CCGTATTTCTGGGCGCCACGTGACGGTGCCGAGCGGCG 79182 36 100.0 35 .................................... GTCCTTGCCGAAGTGGTCCCCGATTGCGATAACTG 79111 36 100.0 36 .................................... AGATTCGGGAAAGCCCTTCGAGCGGAGGCGGCGGTT 79039 36 100.0 38 .................................... GCGATCAAACAAGCCAAGGTCAAGCCTATGGCGGTCGT 78965 36 97.2 37 ...............C.................... GGCGTCATCGAGCAAGAGTCCGCCGAGAAGATGCTCA 78892 36 97.2 0 ...............C.................... | ========== ====== ====== ====== ==================================== ======================================== ================== 41 36 99.9 37 AATTCCACGGCTCAATTGCCGTGGCCCCATTGAAGC # Left flank : GCGCCATCATTATCTGGTCACCTATGACATTGCCGATCCCAAGCGCCTGCGGCGCGTGTTCAAGACCATGAAGGGGTTTGGGGCTCATGTGCAATTCTCCGTCTTTCAATGCGACTTGCCGGATATCGACCTCGTGCGAATGAAGGCGGCCTTGACGGACATTATCGATCTGCGGGAAGATCAGGTCCTCATCATCGATCTCGGATCAGCGGACAGCAACCCGATCAAGCGCATTGAGTCGATGGGGATCAAAGCCGAATTGGAAGCACGCCGCGCTCGTGTCGTCTAAGTTCCGCCGATGGCCACGCGAGCGCTCCTATAATGGATTGGGACCGATCAGCACTCGCCGCATGCAACGAGAACGAACAGCTACTCATGAACAAGAACCGATCACAAAAGGAGGGAAAAGATAACGATGCACCAATCCGTCGTCACATTGAGGCGAAGTACTCGCAATGTGCCGCAGAACTCCTTGTCTGATGACAGCTTTGCAGAAAGCT # Right flank : ACCTATACCAATGGTCGGACCTGCTGTCGATCGTTGCAATTCCACGGCGGCCCGGTGTCGGAACGGCTTCGACACAGCCCGCCTACGAGGAGCTAATTCGACGCGGGTATACTCCCGATCTAGCGGCCATTCTGTACACTCCTGAAGAATTCCAGAACACCAAGCCGATTTTCTTGGATCTGGTAGAAGAGGCGATCTTGAAGGCTGGAACCGTCGAGATCTTTGTGGCGGAGTTGGTCCGGCGGTATCTCTGCTCATAACGAGGGGGATGCTTCCGGTCTGAACATGGATGTTCGGTTGCATGCCCCAGCACCTTAGTCCTTGCCGCTTCGATCTCGCACAACAAATAAGAATCACAATCTGCTAACGTGATCCGGCAAAACAGTGTGGTTAAGGGAGCAAGTCCACGACGGCTACGGTCGTTTCACGCGTGGCGAGAGGAGCGATACTATCGGCAGGAGCGAGTTTCTGGGATGAACGATACAAGCCGGCTTGGCCCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTCCACGGCTCAATTGCCGTGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.20,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 38939-38044 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPZ01000004.1 Candidatus Nitrospira nitrificans isolate COMA2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 38938 37 100.0 36 ..................................... CGCTCCACACCGAGCTCCTCAGCCAGTCGGTGCTGC 38865 37 100.0 34 ..................................... TCTCTGGCGTCATGTGATGCTCCTCGCCCGAGTG 38794 37 100.0 34 ..................................... TATCTCCATCCGTCGTGCGTCCCGCTGGATCAGG 38723 37 100.0 35 ..................................... CACTGAGGACGAACACGAAATCAAAGGCTCGGCGG 38651 37 100.0 35 ..................................... ACATTGGGCAAGAGTTGTCGATCTGAGAGTAGGCC 38579 37 100.0 34 ..................................... TGCGGACAGGCAGGAGCCGATAAAATACCTCATC 38508 37 100.0 34 ..................................... TCTGTCTCTACTCTCCTCTGTCTCTGAGCCCCCA 38437 37 100.0 34 ..................................... ACGGTCCATAGTCTCACTCATTGTGGCTCCTTGG 38366 37 100.0 34 ..................................... GCACACCGCAGAGGCTCATCCTCATAGGCTCACC 38295 37 100.0 36 ..................................... TCGGCCATCCGGGAGATCCGGCGCGTCCCCATCTCC 38222 37 100.0 34 ..................................... ATAATTCTCTCCTCGCCCGAGTGGTGGAGAGCCG 38151 37 100.0 34 ..................................... GTCGTAAAAACGAGATTGAGAGGGCCTACCGTGG 38080 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 13 37 100.0 35 GTAGCGCCCGCTCGAAAGGGCGGGCGAGGATTGAAAC # Left flank : TCCACCGTATTTGCACCGGTAGGGAGGATCGATGAATGTGCTCATCACCTATGATGTCTCGACGGAGACCCCGGCTGGCCGTAGGCGGCTTCGCAAAGTCGCGCTGGCGTGCCTGGATTTTGGACAACGGGTGCAGAAATCCGTCTTCGAATGCTCGGTTACCGAGATGCAGTATGAGGAGGTGATGCGGCGATTATTGGACATCATTGAAGAAAAAGAAGACAGTCTGCGGGTGTATCGCTTGATTGAGCCGAAGGAGAAATATGTGCAGGTCTACGGGGTGAATACCGCGGTTGATTTCGAGGAGCCGTTGGTGTTGTAAGCGCGGACCACGAGCGCTGAGGAAAAGCCGGAAGGATCGCGATGCAGCTAACTTATTGTGCGAGCAAGACATTCAGTGAATGTGAAGGGAGCGTGGTGTCGGAATATCGGAGTGTTTTCCTAGGTTCGCGGAGAAAACTCCATAAGTCATCGGTAGTAGAGGGTTTTCGAGTAGTACT # Right flank : AGAGAAAGCCCACTCCGAGAAGTAGTACACACGTGCAGCCGTGTTCCCCGCGCGAGTGGGGATGAACCGGCTTGGACAAGAACGGTGTTGGCGGGTATGAGCCCTGATTCTGCTGGCTGACTTTTCCCGCCTCCTCTTAGACCCCCGATGTTCACTTGGAGGTCCTTGCGCACGGCAATGACTTGTTCATCCCTATGCCGTGTCCTGGTCATGGCTCCCCTTCGGAGAGACTGCTCTCAGCATTTGTGAACGTCCAAGCCAATGGGGTAGTTTCGGAGGGGGGAGGTCGCACAGTCCTTTCGCGTCGTATTTTTAGATTAAATTTCTCAAGTTGTTGATTTTATTGATATGTATATTCTGTTTTCAAGGGAAGGTTCATGCTAAGATTCACCCGCTGCTTTCTTTACGCCATGGAGTCTCACCTGGCGCTAAGAAACTGGGGGAGGTGATGTGGCCATCACCTCCCCTTTCTTTTGCCGCATCGCTTCCTCGTTGTCGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGCGCCCGCTCGAAAGGGCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.40,-17.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : NA //