Array 1 387802-387188 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZT01000039.1 Candidatus Acidianus copahuensis strain ALE1 ctg7180000000552, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 387801 25 100.0 40 ......................... TCAGAGACTATTTTTGCAAGAGTATTAAGTATATTGGCCC 387736 25 100.0 51 ......................... TTTGTTTCGTTTTCCTCTTTCTCCCTCAATTATCTTGAGGTCTTTTCTTTT 387660 25 100.0 40 ......................... ACTATAACTTTTTGCGTGGTTGTGGGTTGACTTAAACTAA 387595 25 100.0 40 ......................... AGGTAGAACTCTATATCTGCATACTTTTTAGCGTATTTCG 387530 25 100.0 36 ......................... CTTGGTGACGTAATCAGTGTTACTGGTGTGCTATAT 387469 25 100.0 38 ......................... TTTTTTCATCTCCTTAATTTTTTGACTGAACATGCCCC 387406 25 100.0 41 ......................... ATATTTATCGTGTTCATATTCCACTCTTTGTGCCATACCCT 387340 25 100.0 39 ......................... CACACTATTTCTTTTTCTCTATTAGTGCAATATTTTGCA 387276 25 96.0 39 ...........A............. CCCATATATATAGCGGGAACCCATTCCCGCATTAAGAAA 387212 25 96.0 0 ...........A............. | ========== ====== ====== ====== ========================= =================================================== ================== 10 25 99.2 41 GTTGCATCCTAGAAGGAATTGAAAG # Left flank : AATTGGAAGAGG # Right flank : AAAGACTTTAGAGCCAATAAACATAAAATATATATATTGTGTATTTTTTAATGATGACATTGATTATCATTACCTATTCCTTTGTTCCTTCTCATGAAGTAATTGTCCAGCCTTTTTCATCAAAATTTTCACGGACTGCCCTTCTCTCATTCTCTCAAACCTATTCAAAGCATATTGAAAATCCTGAAGAGGGAAAACCTTTTCGTGTGACCGCAATAAAGAAGGAAGGCAAACCACTTTATTCTAGGAAGGGGAGATTTGTAACTCTTCGCGCCAATGAAAAGTACACATTTAACGTAACCTCACTTGATAACGACTTCATGCAAGAGGCAATCTCTAACCCTTCCTTTTCATTTGAGATTTATAATGAAAAATTTTCAGTTGAGCTAGAGAAGATGGAAATATACGATGAGGAGAGGATTACTGCACTTATTCCCGACGATAGGCTAATTAGAATAGATTTTCTCACTCCTACCCTTCTCCAGCCTCCCCGTCCTTCC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAGAAGGAATTGAAAG # Alternate repeat : GTTGCATCCTAAAAGGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 430-5855 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZT01000041.1 Candidatus Acidianus copahuensis strain ALE1 ctg7180000000554, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 430 25 100.0 39 ......................... ACCTGCGCCAATACCTGTTATTAGACCGTCTAAGATTGT 494 25 100.0 39 ......................... ACAAGACTTCGCCTCCTGCCCGTGGTCCCTAATTCATAT 558 25 100.0 37 ......................... TTTTCTCTATCTATCTCCTCTATCTTCTCTGTCTCTT 620 25 100.0 39 ......................... ACGATACCTTTGAGGCGATAGAGCCCCTTACCGTAATGC 684 25 100.0 39 ......................... ATCCTCTCACGTCTAAAACTATTAGTCGATAACACGGTC 748 25 100.0 34 ......................... TGTAGCTGACGCCGGCGATTGTTGCTATGATTAT 807 25 100.0 37 ......................... GTTAAACGCATTAACAGTTTGACGTTGGTGTTTGCGT 869 25 100.0 36 ......................... TTTTTTCGCCTTCACCTTAATCATATTTTCTCTTAT 930 25 100.0 44 ......................... TGACATAGAGGATAACGAAGAAAGGGGCTATATCGAAGAGGCAA 999 25 100.0 41 ......................... TTTATAATAGCGGAGTGTGGTCTGTAGGAGGTATGCGATCT 1065 25 100.0 40 ......................... AATTTTTCTACATCATCAGCAGGCAATCTAAAAGTCACTA 1130 25 100.0 39 ......................... AGTGTTCCCAGTGAAACGGTTAACTAGCGTGTATTATTA 1194 25 100.0 40 ......................... CAATGATTGTTTTAATATCGACTTCAATGGCTAGTCACCT 1259 25 100.0 37 ......................... CATGGTTTTATGCTAACAGTTTTAATTTCCTCGCCTG 1321 25 100.0 39 ......................... TTAGCGTCTCTGACGTCAAAGAAAGTGTAACGGAGAGCC 1385 25 100.0 40 ......................... TATATTATTACTTGATCCGCGATGGCGGGGGACAAAGTAT 1450 25 100.0 40 ......................... ATCCGAAACAATCTGAACAATGTCTTCAACGGGTTGTCCT 1515 25 100.0 39 ......................... TAGATTTCGGTGGTTTACCTTTAGTGCTAAAAACAAAAG 1579 25 100.0 40 ......................... ACTTCTTCATCTTCTTCTTATTCGGAGGCAACGTTGTCCC 1644 25 100.0 37 ......................... CATTTAAATATCTCGTTTTCTCAGCACTCTTCAATGT 1706 25 100.0 36 ......................... TCGTATCCTTAGTCTTGAGATAATAGTCCTGTACAA 1767 25 100.0 38 ......................... AGTTTTACGAATTTGGGTACTATGTTGGTTCGGCTTCT 1830 25 100.0 47 ......................... TTCTGTGGATAATATGTAACCAGGCTAATTTCGCTCATACTGTCCCT 1902 25 100.0 39 ......................... TGCTTATCGAGTTTTACCTCTCTGGCGTCAGCATGAAGG 1966 25 100.0 39 ......................... ACATACACAACATCATACATCATTCCTGTATCCTTTAGT 2030 25 100.0 41 ......................... AAAACGCAGCCCGATTAACGGATGTTATGTCGATATTTTTG 2096 25 100.0 41 ......................... CTTATGATGTCGAAGACGGGAAAGTCCAATTACAGTTCCCA 2162 25 100.0 38 ......................... TTTTGGAATACGCTCTGAAAGAGTAACCCTTTCCAAGT 2225 25 100.0 40 ......................... ATGATTAAATAATAGTAGACTATTTTACCTTCTTTGACCT 2290 25 100.0 38 ......................... AAGGGTTTTCGTCACGCTCTCTCTTTTTGCTTTCAATT 2353 25 100.0 40 ......................... ATGATTAAATAATAGTAGACTATTTTACCTTCTTTGACCT 2418 25 100.0 40 ......................... TCTCTCTACTCTCTCTGTCTGTTCTCTCTTTCTTCTCCTA 2483 25 100.0 39 ......................... TATGAGGCTGTACAAGAGTAATAGGCCGTATAAGAGTAT 2547 25 100.0 40 ......................... CATGTTGTAATAATAACATCAGCCTTTACCTGCATATCTT 2612 25 100.0 40 ......................... ACCCTACGGAATTATGGTTTGACAAGACGTTTGCTGATGT 2677 25 100.0 41 ......................... CATCTATTTCGTGTTGTGTTAGTTCAATCTTTGGTGGTTCA 2743 25 100.0 40 ......................... TTTGTAATTTCTAATTGCGGGCTAACCCTATCGACACCAT 2808 25 100.0 39 ......................... CTGGGTATGCTGTCGATAGAGAAACCTATCGACGCCTTT 2872 25 100.0 39 ......................... TAAAAATTAATCCTATTTTTTTGTTGGGGTTTTTATCAC 2936 25 100.0 39 ......................... TTGGCAGAACGACCCTAGGAAGCAGTGGGGAGATAATAA 3000 25 100.0 40 ......................... GTAGTCATCGTATATAGTCTCGACGCCATTGAGTTTGTGC 3065 25 100.0 40 ......................... AATATTTTTTAACAATTTCTTCCAGTCCCATCCTGATTAA 3130 25 100.0 39 ......................... ATTTCGGTTTGGTTTTCTTCTTCCGCCATGTTTGGTCAA 3194 25 100.0 40 ......................... TGGGGTAAAATAAGTGGGTGAGATAGATGAGTAAGTTAAA 3259 25 100.0 39 ......................... AGCGTATATTCTCCTCCAACAGCTACTACACCTGGGCAA 3323 25 100.0 38 ......................... TTATAATACTCAACGAACACGCCAAATGGCGTGTCGTT 3386 25 100.0 40 ......................... AGCACATGAAGAAGGGCATGCAGGGCAACCAAATCCGCTT 3451 25 100.0 40 ......................... TCACTACTTTTACCATAACCATTATGTTGTTGTCCAGGGT 3516 25 100.0 39 ......................... ACCAATTGTTATCACCTTTGCGTCTTTTGGTAATTCCCA 3580 25 100.0 40 ......................... ACATCCCCAGTATATAATGTCATCTTGTAACCTTTAGCAT 3645 25 100.0 40 ......................... TGTGCTCTTTTTGCAACATCATCTCTATCGCGTTCCTGAT 3710 25 100.0 38 ......................... TAGCGTCAATAGAACTGGCTGTGGCGAGATAAATGGAG 3773 25 100.0 40 ......................... GCAAACAGGGGCAAAAGGCTAGTGGTTCAACTGCAACAAA 3838 25 100.0 42 ......................... AATTCATTAATACTGATTTCATCAACTTGTGCACTATGTAAT 3905 25 100.0 38 ......................... TTCCACATGGAGTAAGAAAGCGTTTTCTGGGGTTAAAA 3968 25 100.0 38 ......................... AAAATAATGTGCCCATACGTCGCTATCAATTCGAAAGT 4031 25 100.0 40 ......................... TAAAAAAACCCCCCGATAGGGTTTTTGCGAGTACCCAGCA 4096 25 100.0 39 ......................... TAAAATTTAAAGCGGATAAGGATGGATACAATATAGTAG 4160 25 100.0 40 ......................... TGGGGGTCGGCGGTATTATCGCCGGCATAAGGATGGGGCT 4225 25 100.0 42 ......................... GCATGCTACGCGGGAAAGTGTGCGTAAGTGGGGTACGCCTTG 4292 25 100.0 39 ......................... GATGAAAAAGAAGAGATAAAAGTCAAAATCCTTGGAACT 4356 25 100.0 41 ......................... CTTTGTTCCTCTGGCCCGAACGTAAATGTTACTCCATTCAG 4422 25 100.0 37 ......................... ATTTGCAAATCATAGTAATAATTATCGAGCTTAATAA 4484 25 100.0 39 ......................... TGGATAACATCACCAGTATGCCTGACAAACTGATCTATT 4548 25 100.0 39 ......................... TTGTCTTGCCATCGTAATATGTTCCTTCTAATGGTTTTG 4612 25 100.0 40 ......................... ATTGCTTTATTCAAATCATCAATTGTGTTTATACTAAATT 4677 25 100.0 40 ......................... TTAGTAGTTATAGTTACGATCGCGCCATTGGCGTGTTCGT 4742 25 100.0 40 ......................... TCGTCATAAGCATTCCTAATGATGAAAGCCAGCTTACGGG 4807 25 100.0 42 ......................... TGAAGTTGAACTGTACTGTATTTGCCATCTCTGGCTTTATAT 4874 25 100.0 39 ......................... CAGCAGTGCTAGTATCCTTGCTCTAGTTGCCATTCCCTT 4938 25 100.0 39 ......................... CAGAGAATTTCGTTGTAGAAGTTAAACCACTTAACCTAA 5002 25 100.0 38 ......................... CCTTTTTCTTCTTTTCCGCTGCGTTCTCTTCATCAAGT 5065 25 100.0 39 ......................... AATGTACATCTGGCACACGTGATATCCCATCTCACGAAT 5129 25 100.0 40 ......................... TTACCGTGATAGACCTCAAGTATTTTATAACTGGTACTTT 5194 25 100.0 38 ......................... TGATGAAGAAAGGAAGTCATTGAGAGGGGCACTAACGC 5257 25 100.0 39 ......................... GTATAGGTGCCCCTACCATTTCTTTGCATAATTCAGCCA 5321 25 100.0 38 ......................... GTATCCTAGCGATGTGTCATTTCTGAAAACGTTTACCC 5384 25 100.0 41 ......................... TTGTTCAACCTCGCGTTAATCAGGGACATGAAAGGGTTGGA 5450 25 100.0 36 ......................... TGGAACTTTTGCAATTTTTGGGTGAATTCGTCAACT 5511 25 100.0 40 ......................... TAGAAGAGGGAGGAGAGAAACAATGAAGTTCAAAATACAC 5576 25 100.0 40 ......................... ACATACTTCGTCTCAAATTCTATAATAATGCTGTTTTCGC 5641 25 100.0 40 ......................... CCTACTGACCCAGTATTTTGTGCATTTGGTTTGTTGTTAT 5706 25 100.0 35 ......................... TAAATTGACGGAACTAAAACAGATAACGTATACGA 5766 25 100.0 40 ......................... TAATTCTCAACAACATACCCCCTTTCTGACAGATTGTGTA 5831 25 96.0 0 ........................A | ========== ====== ====== ====== ========================= =============================================== ================== 85 25 100.0 39 GTTGCATCCTAGAAGGAATTGAAAG # Left flank : TTAAACACTTTTCGGTATTATGAACGTGGATCGTATCGTAAATTGCTATGGTTAATATAGGGGTTATAAGCTTTTGAAGAAGGGAAAATTAAAAGTGTTAGTTAGATCAGTTAATCTGACTAAAAAGTTTTGTCGATCCCTTTTCTATTTATGATAAGGGATGGTTCTAGATTAGAAGCGTAAATTTCCAATTTTTTCTATGAGATAATAAACGTAAAAATGCGAGTCTCAATGCGACTAGTGCGTATTACAAAGAGGGGGGTTAACATTTATAAACGTAAAGAGGTTTTCAATTTAATTAAAAGTCCTTGCGACTGAAACGACGTTAGATCTTTACAACAAATTTGGTCGCATGATGGGTTGGCTAAAACAGATAAAAATAAATAAGAGAAAGGGAGAAATGAAGATAAATAGTATAAAAATACATCAG # Right flank : ACTCCCATAAATTACTGAGCAACAATTTTAATTAAATAACAAGAGTTATCTTTCTAATAAAAATATAAAAATTTTAACGCGTATTTATTTTTACTATATAATCCCTTTCATCCTAGCCTGTCTAACAACTTCTCTGGCAAGTTCCTCCTTTAAATTATCATCCATGTGGAACGTGCCCAACACTTCCTCTAGCGTGGCCTTTTTCTCCTTATATACCTTTATAATCACCTCGCTTACAAACCTATGGATTTCACTTCCATGCCCTGTATTCTTCCCAACAATCCTCTTTACTTCAGGCGATTCAGCTATTTCATCTATTTCGCACATTACATTAGGAGGAGGAGCCTTTTCCTTTTTTGGGTCTGAAAATTTCCAGTCCATAAAATACATCACCTTTTGAGAATTAAGCCTTTGTTACCTTTACTCCCTTGACTAGCACGAAAGGATAAACTCCTTGCATCGGGGCATCCCACCACCTTACAGAGAACCTCTCCTTTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 5531-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZT01000066.1 Candidatus Acidianus copahuensis strain ALE1 ctg7180000000586, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =================================================== ================== 5530 25 100.0 36 ......................... ACTGCGTTCTTTACCGTAATTTCCTCGCCAGTTTGC 5469 25 100.0 42 ......................... GAAGACGGGGGAAGAAGAGAAGGGGTATGAGTTCGTTTGTTT 5402 25 100.0 39 ......................... AAATTTAAAATGCTAAATGTCACTGGATATGTTCCATTT 5338 25 100.0 39 ......................... AATGGCGAGGAAATTGAATAAGCATTATAAAGATTAACC 5274 25 100.0 42 ......................... AACGGCTAACTGCGGACGATTGGAATAGTGCAATTTATACAT 5207 25 100.0 41 ......................... TACTAAGATAATACGTAACTTCATTGTCACGCATAACGTCT 5141 25 100.0 38 ......................... TTCTTTTTGCAATAGAGTAAGTCCCGTCTGTATTCATT 5078 25 100.0 39 ......................... TAACTATCCTTGGTGTTGTTAATTTTCGTAGGGGCTCAC 5014 25 100.0 35 ......................... GCAAGTGTTGTCGCTATAATAACGCTCAGTTTTCC 4954 25 100.0 39 ......................... TTCATCGCCTTAAAAATATGTACACATAGACTTATTTAT 4890 25 100.0 39 ......................... GTGCAGAGTACGGGTTGATGACTGTATATATCAAATAGT 4826 25 100.0 39 ......................... ATGAAATGAGGACAATCTTTGAATGGCAAATGGAGAAGT 4762 25 100.0 40 ......................... TCCCCAGTCTCTGTTTTCCTATAATTTATGATCAGCACCC 4697 25 100.0 39 ......................... CGCAAAACTTTGATAATATGGAAATATATTACTACCGTT 4633 25 100.0 40 ......................... TTTTGCTCGTGTTATTACCACTAGCACTTGTGCATGTTAA 4568 25 100.0 40 ......................... TAATTTTCTCTTAAGTCAGTCTTAATTCCCTCTTAACTTT 4503 25 100.0 39 ......................... ATTCACATCAGCTACAATTAATTACGATAAAGTTGCAGA 4439 25 100.0 35 ......................... TGTTTATGTAAATCGGGAGAATGGCGAAATTTTGA 4379 25 100.0 39 ......................... ATGACTATCTCACTACAATATTGGATTTGCGGTTAAAGC 4315 25 100.0 39 ......................... TTACGTATAATTTCTATTGCATCCTGGATTATCCTATAT 4251 25 100.0 39 ......................... GTTTGGCTTTATCACGCCATACGGTAGCAACTTGTCATC 4187 25 100.0 40 ......................... AACTTCTGTATTTCTTCTCTTGCTTCTTTCCTCTTTCCTT 4122 25 100.0 40 ......................... TAATTATTCCTATTACTAAATCTAACAAATGATTGATATA 4057 25 100.0 39 ......................... TGGTTTTGGTTGCTCATTCTTTTTCACCCCTATCTTTAT 3993 25 100.0 39 ......................... CGGTCTTCCATGGCCTCATACTCTCGCCTTCTGCTTTAT 3929 25 100.0 38 ......................... GTGTGACTGACAGACCTAACGAGTTTATAAAGTGGTAT 3866 25 100.0 35 ......................... TTTAATAGAATGTTGTAGCAAATATTGTACTGACA 3806 25 100.0 41 ......................... TTAATGCTGGTTTGCAGGTTACATTACCACTCCTTCACGGA 3740 25 100.0 42 ......................... AGAAATGCCACATCATTAGGGTATTGAACGTAGTATCTAGTA 3673 25 100.0 40 ......................... TTGCTTTCTCTTCGGGCGTCAACAAAGAAGAGTAATAACG 3608 25 100.0 40 ......................... CCTCAACCCATTCCTTAATACAAACCGTTACTGTGTGCTC 3543 25 100.0 36 ......................... GGTATGTTTCATTGGACAGTTGATATTTTAATGAGG 3482 25 100.0 37 ......................... TTTCTCCCTCCGTAAACAATTCCTAGTTGATTTTCAT 3420 25 100.0 35 ......................... TTCCTTTTTTCATCTTGCAATAGTAATCCTATTAA 3360 25 100.0 40 ......................... AAGTTGGGTAAGTGTGAGAAGCTTTGGTGAACTGAAGCCA 3295 25 100.0 40 ......................... TGAGGAAATTTCCGACTATTACAAGGAAGCATTAAGCGAT 3230 25 100.0 41 ......................... TTATTTGTTAAGTTAGCATACCAGCTATCGTTATAAATTGC 3164 25 100.0 40 ......................... CATAGGGGGGCCTAGTAGGCCTAATATGCAAAATCATTAT 3099 25 100.0 40 ......................... TTCATTTTTTACATTCCTATCCAAAAGGCGATGCTGAGGG 3034 25 100.0 41 ......................... GTGGAGTGAGAGTGAGTGGGGGGGGACAGGGGGAGTGTGGG 2968 25 100.0 38 ......................... TTTCGTCATATACTACTACGCGTTTACCTTTATTTCAG 2905 25 100.0 39 ......................... GCGGATAATAAGTGATGAGCGATACCTCGCTCATACTGT 2841 25 100.0 40 ......................... TATTTTTGAACTATTAGAAGATATTCGTTTTCACTTCGTT 2776 25 100.0 35 ......................... TGAGATGCGAATATTTAGAACCAATACAGACGTTT 2716 25 100.0 41 ......................... TTTCGTTAGTACGCCGGCAAGTGTTGACAGTGTTTCGTTGT 2650 25 100.0 39 ......................... ACAACCCTATTGGTAACAGTGTAAGGATTTTCAATTTCG 2586 25 100.0 39 ......................... ATAAGATTTTGCTAATAGAGATAGTGCCAATTTCAAAAA 2522 25 100.0 43 ......................... CGAACTTGGTTATTTGTCGCCCTCAACACTCTTAATATATCCC 2454 25 100.0 43 ......................... AAGGTCTTGGCAATAAAGGGGATATCCTCTGGCGGGAACCCTT 2386 25 100.0 39 ......................... ATTCGAGTTCTTGCGGTGGGTTCGCGGTGACTAATCCTC 2322 25 100.0 40 ......................... CGTTGGTTACGGCAGTAATAGTGTTGTTGTTGAAATTAAT 2257 25 100.0 40 ......................... CTACACACTCCGCCTTCTACGTCATATCTTGAAGGGGCTA 2192 25 100.0 40 ......................... ATCAAGATTCGACGATGAGGTATGTCGTTGGCTAGCCGTA 2127 25 100.0 37 ......................... CCTTGCTGATACTTAGTGATATTTCCCATTCATCAGT 2065 25 100.0 38 ......................... CCTCTTCTCCAGCCAATACATCAACGCCCCACGTATCA 2002 25 100.0 41 ......................... GTATAGTGTTGTCTCTGTCTGTGATAGTCCCTATGTACGCT 1936 25 100.0 39 ......................... CAGAACTCCTTAACAACTCTCTTTCCCAGTTCCGTTAAT 1872 25 100.0 40 ......................... ACAGCACTTTTGCTGTATACCCCATCATACCACAAATCAT 1807 25 100.0 40 ......................... TTCAAACCAATTGACTCTAACATCCATTCTTCCGCCAACT 1742 25 100.0 37 ......................... CAGAAAGTGTCACTGCTGTCTGCAACCCCGTCGTAAA 1680 25 100.0 35 ......................... CAAACATCATTGCTCAATAACTCTGCTAAAGCCAG 1620 25 100.0 38 ......................... CCATTAACATTATCCCTAAGGAACGTTATGCTACAGTA 1557 25 100.0 40 ......................... ACTTTAAACTCTAGGTGCTTCACTAAAACATCACCACCGC 1492 25 100.0 51 ......................... CCCCCTCTCCATATGTGTACAGCAGTTTAATACGAACACGAACAGTAATGT 1416 25 100.0 40 ......................... CCCCCTCTCCATAATATCTTATCTTTATTTCTTTTTGATT 1351 25 100.0 40 ......................... ATGATAACAGATATACCAGAGACAAATTTCAGTTAATTTC 1286 25 100.0 41 ......................... CAGACTACCCCTCTGGTTACCTTTATGCGCCACACATCCTT 1220 25 100.0 40 ......................... TTATTGTATGCCAATATAACTACTGGCATTAGTTCCTTGT 1155 25 100.0 40 ......................... AATAAATGCTTTAATTGATATATCCCTTTACCGTTGTCTA 1090 25 100.0 39 ......................... GAAACGCATCACAGTATCCTTATACTGGGTTGAACCCAT 1026 25 100.0 37 ......................... CCTTTTGGTTTCACAGGTGGTTGTGCCTGTGCTATAC 964 25 100.0 40 ......................... AAAAAAACTTGCATTTATTCTATCACCTTCATTATTTCTT 899 25 100.0 39 ......................... ATAACTTCTTTTCTATCTCGTTTGTTTGTTTAAAATCAT 835 25 100.0 42 ......................... ATAAGTTAGAGACTGGTCCATATGTGGACGAGAGGATTGAAG 768 25 100.0 39 ......................... ATTGGTTGTTCGTACCAGATTTGCTAATGCCACCTAGTG 704 25 100.0 39 ......................... GTGCAAACAAGCAATGGCAAATGCTTAGCCATTAGAAAA 640 25 100.0 40 ......................... ATTGTTGCAATAATAATAAATAGCACTGTCAGCAATGAAT 575 25 100.0 36 ......................... TTAAACTTCAATCCTTCCCCCAAATACAGAACGGGA 514 25 96.0 40 ...........A............. CAACAGTATCGCGAGATATAGGTGTTCTGTATCATCCGCA 449 25 100.0 39 ......................... ACTCTTCTTTGTCTCTACTCTCTATCTTCTTTGTCACGT 385 25 100.0 40 ......................... TCAAAAACTTCTTCATACATAATTTTATATGTCAATTCGA 320 25 100.0 40 ......................... TCAGATAGCTTCGAGCGGTAAAAATTGTAGAAGTCATAAT 255 25 100.0 39 ......................... AAGTTAATACCACCTGAAACAGCGAGTGAATAGTCAGAT 191 25 100.0 40 ......................... ATAAGGTGTACTTCTTGTCCCTTTCGACCGATTTGATATT 126 25 100.0 40 ......................... TTGAGTTGGCGTTGGCTGGCGAGACTGCCTTTTGGTTGCT 61 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =================================================== ================== 86 25 100.0 39 GTTGCATCCTAGAAGGAATTGAAAG # Left flank : CTATAATTTTATCTTGCTTTAGACACAATAAATAGAAGTAAGCAGGAAAAGTAGGGAGAAAAGTAAGGGCGTTAAACACTTTTCGGTATTATGAACGTGAATCGTATCGTGAATTGCTAGGGTTAATATAGGGGTTATAAGCTTTTGAAGAAGGGAAAATTTAAAGTGTTAGTTAGATTAGTTAATCTGACTAAAAAGTTTTGTCGATCCCTTTTCTATTTATGATAAGGGAGAGTTTTAAGTTAGAAGCGTAAATTTCCACTTTTTTCGTTGAGATAATAAACGTTAAAATGCGAGTCTCAATGCGACTAGTGCGTATTACAAAGAGGGGGGTTAACATTTATAAACGTAAAGAGGTTTTCAATTTAATTAAAAGTCCTTGCGACTGAAACGACGTTAGATCTTTACAACAAATTTGGTCGCATGATGGGTTGGCTAAAACAGATAAAAATAAATAAGAGAAAGGGAGAAATGAAGATAAGTAGTATAAAAATACATCA # Right flank : GTTGAGTTGGCGTTGGCTGGCGAGACTGCCTTTTGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA // Array 1 22564-16237 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZT01000065.1 Candidatus Acidianus copahuensis strain ALE1 ctg7180000000585, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================ ================== 22563 25 96.0 41 ...........A............. TGATACCCAACTCCGATGATATTAGCCCCGTTGATAGTCGT 22497 25 96.0 37 ...........A............. GAGAACCCCCGAAAAATCTGTGTTAACTCCCTTTCGA 22435 25 96.0 41 ...........A............. TAGCTTATCGACGAAATAAATCTCTGGTATACCATATTTCT 22369 25 96.0 40 ...........A............. GCAGAAACATAACGAAGTTGGCTTTACTTATCTGACCCAT 22304 25 96.0 43 ...........A............. TGCATGTACATAGGTCAGCCCTTTATAGGGCTATGCTGATCTA 22236 25 96.0 40 ...........A............. ATTCTAACCATTCCTTCAGTTCGTATGTGTTACGTTCGTT 22171 25 96.0 43 ...........A............. ACTGCTTTTTTCCCATGGATGGGAAACAAATCATAAATAAAGT 22103 25 100.0 37 ......................... CCAAGCTCAATATCAGTTCTATCAATTTATCGATTTT 22041 25 100.0 34 ......................... AACTTTCATACCATTACACCCCCGCAACACTCTG 21982 25 100.0 41 ......................... AGGAAAGGTACTGACATCGCTATCGATAACGTTAACGCTAT 21916 25 100.0 38 ......................... TAAAACCGTTGCAGACTGTCTATTGTGTCAAATTTTTG 21853 25 100.0 42 ......................... ATCTAAATTTATTCCATGAAGAAGTGGCAAAGTTACTTGCAA 21786 25 100.0 41 ......................... AGGAAAAATTATATTGATATCCCATATATTCGTATTTCGTG 21720 25 100.0 39 ......................... TGTTAGCGGGAGAAGTAGCTACATGGTTACTTATCTGGT 21656 25 100.0 40 ......................... AAAACCCTCGTTAATTGACTTTTTAGTAATCGTTATCGCG 21591 25 100.0 40 ......................... TCATAACGTCCTCATCAACCGCAATGTCCTTCCTTACTCT 21526 25 100.0 37 ......................... TTGGTCTTAAGACAGGGGACAATAGGCACAAGAGGTT 21464 25 100.0 41 ......................... GGGTTTGTTTACCCCTTAATTCCTGGGGGCTTAACCCCCAA 21398 25 100.0 39 ......................... TTTAGCATTTCAATATGCTGTTTTGCAATAATTTTAAAA 21334 25 100.0 40 ......................... TATTTATTTGTCAAGGTATTGTAAGGTACTTTATTATTGG 21269 25 100.0 40 ......................... AAAGCTTTTGTAATTGCAGTTGTTAAATATGTTTGCTGTA 21204 25 100.0 40 ......................... TTGGCTAACACTATGGGGTCGAGCCCCATATAATCGCTTT 21139 25 100.0 39 ......................... TGTTGATTTTCTAACTGGTTTCTCTGATTTTCTTGATTT 21075 25 100.0 40 ......................... TTAAAGCTACTGGTAATGTCAGTAGAAACGTCATTGAAGA 21010 25 100.0 38 ......................... CCTCTATTCTCTCTCTATCTCTCCTCTTCTCTGTCTCT 20947 25 100.0 37 ......................... CATACTGGCTAATTGCAAGACAAATGGCTTATTCCAA 20885 25 100.0 40 ......................... AATACTTTCAGCACCTTTCTTGCGGACGTACCATTACCGT 20820 25 100.0 40 ......................... CGGTAATCCTCCTTGTGGTCCTTTATATGCAGGCAATTGC 20755 25 100.0 40 ......................... TTGTATTAGTGATATTAATGTTGCTGAAATGTTGATATGC 20690 25 100.0 39 ......................... TGCTAAATTCAATATTATCACTCATTTCGTACTATTTAT 20626 25 100.0 37 ......................... CGCGACACACTGTGTGTGGTGTGTGGTGTCCCAATTT 20564 25 100.0 41 ......................... ATAGCGACTTCTGCTTTAGCCATCCCAGAAATTCGTTATAG 20498 25 100.0 39 ......................... CCCTTGCTCAGATATAACATCGTATCCTTTGGCGTCGTT 20434 25 100.0 40 ......................... GCTAAATAAAAGCTTTGACGTAGCCCAACCCACCACTACG 20369 25 100.0 41 ......................... AGTGGGGTAATCCCCCATGTTCGTTAAAGACTGGGTTGTGG 20303 25 100.0 40 ......................... TTTGGTGATGAGATGATAACAGATATACTGCCTATATTGG 20238 25 100.0 39 ......................... AACTAACACGCTCATGGCTCATTCCGCAAACTTGTTTTT 20174 25 100.0 39 ......................... CCCCACAACAATACTACGTTGAAAATAAAACACTCGGAA 20110 25 100.0 40 ......................... ATATTTATATTATTATACAATTTTTAATATATTTTAGAAA 20045 25 100.0 39 ......................... TTTGGTGTGGCACGGGATGCCACAGGACATACATCCCTG 19981 25 100.0 38 ......................... TACAGGGGGGCCGAGAAGAAGCCCTCGGCCTAGCTGAG 19918 25 100.0 36 ......................... TAAATGTTCCAACGCCCTCTTCGAATAACTACCAAG 19857 25 100.0 37 ......................... GTTGGGCATAACTATCTATATGCTGTCGGGTATACAT 19795 25 100.0 39 ......................... ATGCCAACTACGATAAGCGTTGGGACTTGTTCTACGCGG 19731 25 100.0 36 ......................... TTATTGATTGCGTCCCACTCATCAGCGTAGTTCTTC 19670 25 100.0 39 ......................... ATACTCTTTATTACCGATGCATTCCCCGTCTCCTAACGG 19606 25 100.0 39 ......................... GCCAAAGACAGATTCGCAGAATGTTTTTACTATTATCAT 19542 25 100.0 39 ......................... TTATTTCTAGTTCATGTATTCGTTTTTTAGCTCGTCCTG 19478 25 100.0 38 ......................... CTTAGAGTTACCCTTTTGCATACGTATTTCCATTTGTT 19415 25 100.0 38 ......................... CTTCTTTCTTGTGGTTGTTCGGCTTTGCCTTCAATTTT 19352 25 100.0 40 ......................... GTAGTTACATTCTCTTCTTCGCAGACTTATGTAAGCATAT 19287 25 100.0 40 ......................... ATATAATCCCAGGATCGCTTATACATCCTTAACGCATTAT 19222 25 100.0 37 ......................... AAGCCATTCGGCAAATTTATACGAAGATATTTTGATC 19160 25 100.0 40 ......................... TAAAACAGCTCTTGTATCTTCTCTTTTTCTTGGTCGCTCA 19095 25 100.0 41 ......................... CTATCCCTGAAAATTGCCTTGAAAATCCACCAACACTCGTT 19029 25 100.0 39 ......................... ATGTTTTTCAATGTAATTAAATTCGCCCTGATTAAATGC 18965 25 100.0 37 ......................... TTATGTCTCATGTAAACATCGTAGGCATCATCTGGTC 18903 25 100.0 40 ......................... TTATCTACATCAACGACAATGTATTCAATCGTTTCTTTTA 18838 25 100.0 42 ......................... TCATAGCGATATACCGTAATGAAGGTAAACCGGCTAGCGAGA 18771 25 96.0 40 ...........A............. TTAGTGGGGGTCTCATAGAAAAAGAAATAGAATTTTTTTT 18706 25 100.0 37 ......................... AGATATATTAATGCTATAGCTGTCCGCATATGTAATT 18644 25 100.0 40 ......................... TTTGACCTACCATAAATACTAACAGCAGTATAACTATCAC 18579 25 100.0 36 ......................... TGATCCCCCCTGGTGAAACCCATAATAATTAATCTG 18518 25 100.0 39 ......................... TTGTAGATATGTAGTCTACAATAGTGATGTCCGCTATTA 18454 25 100.0 37 ......................... CTTTATCGTTAAAACCGATAATATATCGTAAAACCAT 18392 25 100.0 39 ......................... CATATGGGAAAAGTAGGCTAGGAGGACGCGGCCCCCGGT 18328 25 100.0 38 ......................... TGTGAGTAAAATGGTTTCCGAATATTTGTCTGTTACAG 18265 25 100.0 37 ......................... CTAATCTTCTCTTCGAGTTCCTTTCTTTCCTTCTCAA 18203 25 100.0 36 ......................... TTGAAAGTACTGAAGGTAGCACAGTACGCTTTCCAA 18142 25 100.0 40 ......................... ATAACACTCCCGCTTTCATTAAGTCACTGAGTCTACCAGT 18077 25 100.0 42 ......................... TTTACTAGGGGTAGTAAAACTCAATCACCTCGGATTCCACAA 18010 25 100.0 37 ......................... CCGAAGGACACTATGTTGTATTTATCAAAATCGGAAC 17948 25 100.0 40 ......................... TTCGTTCTTTCTCCAGTAACGACTGTACTGCGTCTCTAAT 17883 25 100.0 39 ......................... ACAAACAACAATTCCCATAGCATCATAGTTAGATTCAAG 17819 25 100.0 42 ......................... AAATTCTTTTGCACAGAATATTGCTCAGAAGCCCGAACTAAA 17752 25 100.0 40 ......................... CCATTGGGGTCCTCCCCGAAGATATTCACACTTATGTTTG 17687 25 100.0 40 ......................... CCGTCTGGTGTATAATCTACATAATTTATCTCTATTTCTT 17622 25 96.0 41 ...........T............. TAAGTGACCGTGACATATGCAGTCGCCTGGCCGAGCTCTTA 17556 25 100.0 36 ......................... AATTGTATGAACCTTATCGATTGTGGTAGTTGTGTT 17495 25 100.0 40 ......................... TATGCAGTTTTAACAATTAATGAAATTACAGTACAAGTAA 17430 25 100.0 40 ......................... CTTGGAGGACCATACCACCAGTATGTCCTTAAATATATCT 17365 25 96.0 41 ...........T............. TAAGTGACCGTGACATATGCAGTCGCCTGGCCGAGCTCTTA 17299 25 100.0 40 ......................... AAGATTGTGTCGCTGTCTCTTACCACATCGACAAGGCTTA 17234 25 100.0 40 ......................... GTGGTATTCCCCAATTGGTCTCCATCAACTAAGGCGATTT 17169 25 100.0 40 ......................... GAAATAATGACCTTTAACTCTTGATTAGAAAAACTTGTTT 17104 25 100.0 39 ......................... CTCTAGGGGTTGGGGCAGGCGGGGAAAAAGGGAGGCTGC 17040 25 100.0 36 ......................... AAAACCTTTGTAACTCCACGTTGTGCAAGTTCCAAA 16979 25 100.0 40 ......................... ATCACGAAGGCGAGCTCATCTTTTATGATGGGCTCAGCCT 16914 25 100.0 41 ......................... GCATCAGTTACCTCTGATGTTGATTTGAACTCCTTATTTGT 16848 25 100.0 40 ......................... TTTTTTGTATTATAGATACTAGAATTTATCGTTTTTCTAT 16783 25 100.0 39 ......................... TAATATCTTCATTGTCAAGTTTGTCATTTTCGACAGCAA 16719 25 100.0 37 ......................... ATCTGCAAACCTAGATAACATTAATGGCTATATTTCG 16657 25 100.0 40 ......................... GCAAACCAAGTACAGTACTTACTTGTTGATGAAAGTGTGT 16592 25 100.0 48 ......................... CCTTAACCATATTATCGCTACATGTGATAAACTTCCCGATTACCTAAA 16519 25 100.0 40 ......................... ATTGGTGTCGTCAAGACAATATCCTCTGCGCCGGTTGTCG 16454 25 96.0 39 ...........A............. GGTCTTTTGCTGCTGAAATCAAACAAGGGCAAATCTACT 16390 25 96.0 39 ...........A............. TACTTAACACTACAGTGTTGGCACACATATATTGTATTT 16326 25 96.0 40 ...........A............. AAAAAAAGCTTAATTGCAGATTTTAAGATAGGATATATAA 16261 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================ ================== 99 25 99.5 39 GTTGCATCCTAGAAGGAATTGAAAG # Left flank : GAAAAGTAAGGGCGTTAAACACTTTTCGGTATTATGAACGTGGATCGTATCGTGAATTGCTAGGATTAATATAGGGGTTATAAGCTTTTGAAGAAGGGAAAATTTAAAGTGTTCGTTAGATCAGTTAATGTGACTAAAAAGTTTTGTCGATCCCTTTTCTATTTATGATAAGGGACAGTTCTAGATTAGAAGCGTAAATTTCCAATTTTTTCTTTGAGATAATAAACGTAAAAATGCGAGTCTCAATGCGACTAGTGCGTATTACAAAGAGGAGGGTTAACATTTATAAACGTAAAGAGGTTTTCAATTTAATTAAAAGTCCTTGCGACTGAAAGGACGTTAGATCTTTACAACAAATTTGGTCGCATGATGGGTTGGCTAAAACAGATAAAAATAAATAAGAGAAAGGGAGAAATGAAGATAAGTAGTATAAAAATACATC # Right flank : AAAGAAAAGGCTTATTGGGTTTATTATCTGATTTAATGAGATGATTAGAATCGGAAGAATATCTAAAGACGAAGAAGAGTATTACTTTTCACTTGATGGCGGAAAGTGGAGGAACGTGAAAGTTAAGGACAAGATATGGCGGGGCTTAAAAGGTGTTAAGTATATGGAAGCCGAGTTAGATGAAGATTCAGGTACAGTGATAAAGAGAGTTTATAAGGTAGGGGATAAGGTAATAAGCGTAGAATACTTTGAAGTAGAAGGTGGACAACTCAAAGGTCTAACCTTTAGGTGCGAAAGTTTGGGAGACATATTATCGCAAGTAGTTGAGATTTGCGAAAATGAGAAAATAAGGGTCTTTAGATATGAAGGGAAGTTCTTTGACGATAAGGCGCAGTTGCAGAACTATATAGTGAATACTATAAAGAGGCAAATTGAGCAGGATTTTGTAAGGGTCAACGGGAAGATAAAGGCAGAGACGGACAAGGCATATCTACTGTCTT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAGAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 17370-13734 **** Predicted by CRISPRDetect 2.4 *** >NZ_JFZT01000067.1 Candidatus Acidianus copahuensis strain ALE1 ctg7180000000590, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 17369 25 100.0 41 ......................... AGTTGCCTTGTGATGTCTTTTCGTTTATCCTTACCACTGGT 17303 25 100.0 41 ......................... CTGAGCCATGGCAAGAAGATAAGCAGTATACGTTCTACTTA 17237 25 100.0 36 ......................... GACAGATGAGCAATGGTACTGTGCAACTGGGTTTGT 17176 25 100.0 40 ......................... AATAGGGTTTTTAAAAAAAGAAGATAACAGATAGACGATG 17111 25 96.0 41 ...........G............. TATCGGATAAGGAGGAAGCCCTCGGCTGGGCATTAGCCGAG 17045 25 100.0 40 ......................... TTGATGGAAATAGCATTATCAGAATGTTAATCCTAGATAA 16980 25 100.0 41 ......................... ATTAGTAAGTGCACGCGGTGTAACCCGAACATGTTTGGTAA 16914 25 100.0 39 ......................... ATAAAGTACTACAACACTGCTTATGTTGAACCATGGGCA 16850 25 100.0 40 ......................... GGGTCCTCGCGTAGTTTTAACGCCAATTTGTAGAGTTCTT 16785 25 100.0 40 ......................... ATGTCGCTTTCAACCTCAACTGCAATGACTTTGTTGTCGC 16720 25 100.0 40 ......................... TCATGAACCACCCCTGAGGGTTATTGCCCTTATCAATGCC 16655 25 100.0 41 ......................... ATCTGTGTTGACCTTTCTGCTGTTGGTCTGTTTTCCTCCTT 16589 25 100.0 39 ......................... ATTTGCCTAGAAGAGTTAGAAAGACGTATGAAGATATGC 16525 25 100.0 40 ......................... TCATATCGTTGATGATTTCACGCAATATGTCGTTATTCAT 16460 25 100.0 38 ......................... TACGCTGTTGTATCTCTTGCCTCACTCTTTCACTCCGC 16397 25 100.0 40 ......................... ATGTTTTCCACTGTTTGAGCTGGTAGATGTTGGTAGTCTT 16332 25 100.0 35 ......................... CTATTATCTCCTCCCTAAACAGTATGAGGACTACT 16272 25 100.0 43 ......................... TTCCTATTTTCATTTCCATTTCCACCTCTGGGGGTTGTGTCCC 16204 25 100.0 40 ......................... CCAGAGGGATATGATTTTATAGCGTTCTGGACAGCCTTGT 16139 25 100.0 42 ......................... CCATCATATTCCATTGGCACTTTCACGTAGGTGACATTGTTT 16072 25 96.0 40 ..C...................... AGAAGGAAAAATATTTTCTGCAACTTTGTTGCGGTAACTT 16007 25 100.0 39 ......................... ACTCTAGCGACTTAGTAGCTTCTTCTTCATCCATGTTAT 15943 25 100.0 33 ......................... GGGTCGATGACAAAAGTGTAGAGGTCAGGGTAT 15885 25 100.0 39 ......................... GCTAGTTCTACAGTATCTTCCCAAATCCCGTCATGTATG 15821 25 100.0 41 ......................... TACAAACTCTTCGCTACTTTTAGTTGCGAAAGCTATCTACT 15755 25 100.0 38 ......................... AAGTGCCAAAGTCGTGAGAGTGAAACTATGACTTCAAG 15692 25 100.0 37 ......................... GAGATATTTCTAGCGTAAGTTTAGCTGGTTCAATGAT 15630 25 100.0 39 ......................... TCTTCTACTTCTTCGTTATGAACTTCGTAGCTCAAAAAC 15566 25 100.0 41 ......................... TCACGATGGAAACGGACGGGTTGTGATCTGGTGGATGAACT 15500 25 100.0 39 ......................... TCGGCGACCCAATAAAAGCGAACTTACAGTTTAGCCGTG 15436 25 100.0 40 ......................... TATTATAAAGCCACGTAAATACTATCCTCACTTCGTCTCT 15371 25 100.0 39 ......................... CGCCGAAGGTAAAATTGCGTTGCTGTACGTCTTCGTGAG 15307 25 96.0 39 ...........G............. ATATAGTGGGCTTACGATTGTGAGGATTGATATAAAGAA 15243 25 100.0 40 ......................... TCAACCTCAATTGCCTTACTTTGTGCAATGGCATCCCTTA 15178 25 100.0 43 ......................... TGGAGTTTATCTCAGAGATATTCGCTGAGGCTAGGAAGTACGG 15110 25 100.0 39 ......................... CTGTCACTAGTTTGTTTTCTTCTCTTCTCTTCTCTCCTC 15046 25 100.0 40 ......................... GTCAATGTCACTTCATAGCCCTTAAGGCAAACGGTAACAG 14981 25 100.0 39 ......................... CGTACCATTTGCAGCAACAGTGATAGTGTATACACCCGG 14917 25 96.0 36 ...........G............. CGCTGTAGTCCCTAGCACATAGGCATCGGTAAACAT 14856 25 96.0 39 ...........G............. AGAATTGATTGGTAACTCCCCAGTTACTGACAAAAAACT 14792 25 96.0 39 ...........G............. GGTGGGTGGTCTTCCCACCGATTTAGGTATATGTACATA 14728 25 96.0 40 ...........G............. ATCTCCAACGTACCTTCAGTCTCCGTTACCAACACACCTT 14663 25 96.0 40 ...........G............. AAGTATAAGCTAAAGTGCTAATCTTTTTCTTTTTTCTTTC 14598 25 96.0 41 ...........G............. CTTATTTCACCCCTATTATTATCTTCCTTTATAACCTTTAT 14532 25 96.0 41 ...........G............. GCAATAATTGGTGGCTAGATACAGAAAGGACAGTATTCAAT 14466 25 96.0 39 ...........G............. ATCAATTTCTTCTAATTCTTCGTAGACCCAAGAATAACT 14402 25 96.0 41 ...........G............. GAAGTTAGCAGTCTCACTGGTGGGTCAAGTCCTACTGTCAC 14336 25 96.0 40 ...........G............. TTATGAAGTCACCATTACTTATTGGTATTAGTCCATGTAG 14271 25 96.0 36 ...........G............. TTGTAAAGAATGTATGTTTTATGATCATTCCTATAG 14210 25 100.0 40 ......................... TATTGATCAGGGAGGATGTAGTAAGTGTGTTTATCGTCAC 14145 25 100.0 40 ......................... TATTGATCAGGGAGGATGTAGTAAGTGTGTTTATCGTCAC 14080 25 100.0 39 ......................... CCAACTCCTCGATTGACTTCGCTTCTTTCAATCTTTTTT 14016 25 100.0 39 ......................... TTTGGACCAAGTCTCACTTTTTTTATTTTTCTTCCATCT 13952 25 100.0 39 ......................... TACAGTTAGTCGCAAAACTGATAAGAGGCGGGCTATGAT 13888 25 96.0 39 ...........G............. TTCTATTGTCGTATTGTCTTCCTTTGTAAAAATAAACAA 13824 25 96.0 41 ...........G............. AGAAGCTCCCCGCCTGAAGGGGGGAGCTTTAACATACCCCT 13758 25 96.0 0 ...........G............. | ========== ====== ====== ====== ========================= =========================================== ================== 57 25 98.8 40 GTTGCATCCTAAAAGGAATTGAAAG # Left flank : CTATAATTTTGTCTTGTTTTAGACACAATAAATGGAAGTAAGCAGGAAAAGTAGGGAGAAAAGTAAGTGCGTTAAACACTTTTCGGTATTATGAACGTGGATCGTATCGTAAATTGCTATGGTTAATATAGGGGTTATAAGCTTTTGAAGAAGGGAAAATTAAAAGTGTTAGTTAGATCAGTTAATCTGACTAAAAAGTTTTGTCGATCCCTTTTCTATTTATGATAAGGGATGGTTCTAGATTAGAAGCGTAAATTTCCAATTTTTTCTATGAGATAATAAACGTAAAAATGCGAGTCTCAATGCGACTAGTGCGTATTACAAAGAGGGGGGTTAACATTTATAAACGTAAAGAGGTTTTCAATTTAATTAAAAGTCCTTGCGACTGAAACGACGTTAGATCTTTACAACAAATTTGGTCGCATGATGGGTTGGCTAAAACAGATAAAAATAAATAAGAGAAAGGGAGAAATGAAGATAAATAGTATAAAAATACATCA # Right flank : ATCTTTCAAGTTCACGTAGTGTCAAGAGATATGCGTTCTCCATCACTTTGCCTAGATCTGAGACCTTATAACTTGTGATCAAGATTAAGGAAGAGGCAAATACTGATATCGCTAGGTCTTGATCAGTTAAACCTAAAGCTAATAACTCCCTTAACTTTTCCCTTATGTGCGACGATATCTTATCAATAATTTGTTCATTACCATCTTCAAGTTTACCCTTTTTCCAAACGAGAATAACGCTAACGTTCTTTGATCTCTTCCCCCTTGTTGCAACGCTTTCCTTAAACTCTGTAAGCAAAGGAAACGCGTTTACGATTTTTAATCCCGCGTTTATTCCAGCCTCAACAAGTAATTCCCAAGCCACAAGGTAGTTGCTAGAGTAAAAAGTTACCAAAACACCTTCGTCCTTAAGGTGAGAAGACATTGACTTAAACGAAGAGTTAAGCAAGGATCTGTAGTGCTCTAAACCCTCCTCCTTTCTAGCCTTAGAACCAAGCCTT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATCCTAAAAGGAATTGAAAG # Alternate repeat : GTTGCATCCTAGAAGGAATTGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA //