Array 1 674-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCD01000032.1 Pseudoalteromonas ruthenica strain S3136 S3136_S32_L001_R1_001__paired__contig_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 673 28 100.0 32 ............................ TTTGGAAAAGCAATAAACGTTAATGCAGTGAA 613 28 100.0 32 ............................ GTCAGCATTCAAATAAACACACTGCAAAGCAA 553 28 100.0 32 ............................ AAATGCGGGGCAAACTGCAATCAAATTTAGAG 493 28 100.0 32 ............................ ATCGCACCCCCGTTGAAGTGGTGAACGGCAAG 433 28 100.0 32 ............................ TCGAACAACTCGCGGATTACATCACGGCCAAG 373 28 100.0 32 ............................ ACCAAGCGCTTTGCAATAAAGATGATGAGTTT 313 28 96.4 32 ...T........................ ATAAACGTGTAGTGGTGGCTGCGGCCAATAAA 253 28 100.0 31 ............................ ATAACACTAGGTCTTGCTTTAAGACGTTTGC 194 28 100.0 32 ............................ TACTCCCAAGTAATGGCAATAGGCAAGTTAAA 134 28 100.0 32 ............................ ATAAAAAAAAGATAAAAATAAAAAAGAAAAAT 74 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.7 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : CAGGCAGCTTAGAAAATACTTAGCTCGGGCCGCTTCTGAACCTTCT # Right flank : AACAATAGTAAGCTCAAATAAAAAAATGCATCTCTTCACTGCAGACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1-381 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCD01000038.1 Pseudoalteromonas ruthenica strain S3136 S3136_S32_L001_R1_001__paired__contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 21 75.0 32 -------..................... TAACCGTCAGTCAACTCAAAATAAAGCTTTTA 54 28 96.4 32 .................T.......... CAATGAGCTATAAAGTTAGAAAGCTTGGTGAT 114 28 100.0 32 ............................ TATCAATTTGGAGCATGTAAGCGCCGCCGGTG 174 28 100.0 32 ............................ TTGTCTCGGGTGCGGGCAGGGTCGAAACCAAT 234 28 100.0 32 ............................ AGCCAAAGGCACGGGGCGCTTCCCCTAGATGA 294 28 100.0 32 ............................ GTTTAAATTTCTGATGCACGATAACAACGGGC 354 28 92.9 0 ................AT.......... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 94.9 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : | # Right flank : ATTTATAATTTATAATTTGTGAGCCATGATTGTCTCTAATCTTTACTGCTGAATAGGCACCTTATCAGTGGGTTTGATGTTTTTGAGTTGTGTGTCGTTGAGTGGTTTAACCGTTTTTGCCATATCTACTATTCCCTGAAGGCCTTTAAACTTAAGGCTTTGGCGCAGCGACGTACTACGAGAACGAACACTATGTACTAACTTAGTACATGAAGCAGTACATAAACAACTGAATTTCAAAAAACGTGGGCGTACATTACAGGCATTAAAAAACCCGCTAAGTCTTTATTCTCAGCGGGTTTTAAACGTTTTCGAACTTAATCGAACAGTGAAGTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGGAAAACCTCGACCATCGGTCCTACATGTTTAGTGTCGTCTTTTGGTTAACCTTTGAGTCTCGGACGCACACGATAAACAAAGGCGAGGCCGCTTAGTTTTAACCCTTCAACCCCGGCCAGGGTTTCCGTAGCG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 42720-42475 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCD01000006.1 Pseudoalteromonas ruthenica strain S3136 S3136_S32_L001_R1_001__paired__contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 42719 28 92.9 45 .......................G.A.. GATTTAGTGTAGGTAAGGCTTTTAGCCTTACAAAACAAGTTTCTC 42646 28 100.0 43 ............................ CGGGATTGGGCCAAGCCCAACCTACAGTTTAGGTTGGTTTGTT 42575 28 100.0 45 ............................ CGAGATTGGGCTAAAGCCCAACCCACAGGTTCCGCCAGATGTGTT 42502 28 85.7 0 ......................C.CCT. | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 94.6 45 GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Left flank : CAAGTTTGCGTGAATTAAAGCAGCTTGCAAGCACTCATGGCTTTGCTGATATCGCCGCAAATGAAGAAGATGCTGACACCTTATTACAGCTGCTATTTTGCATGGTGATAGAGCCGACGATTGGCCAGCAACAGCCGTGTTTTGTGTATCACTTTCCGGCCTCGCAAGCGGCACTAGCGCGTCTTCATGAGCAAGACCCACGCGTTGCCGGGCGTTTTGAGCTGTATTACCAAGGGCAAGAGCTCGCTAATGGCTTTAATGAGCTGACCGACGCCAATGAACAGCGCCAGCGCTTTGCCAATGACAACAATAAACGTATTGCTAAAGGTCTTGAGCCCGTAGCCTTGGATGAAAACCTACTAGCAGCACTGGATGCCGGCCTACCACAATGTGCCGGAGTCGCCCTCGGAGTGGATCGTCTCGTGATGATTGCCTGCGGCAAAAAGCATATTCGCGAAGTGCTCAGTTTCGACATCGAACGCGCCTAACCTCAAATTATT # Right flank : TAAATAAACCGAATTCCAGTACGGGTATAATCGCACACTAGAGACAATCCCTTTTCGCAATGGGTTGGCAACGATGTACCTGGCTATGTGAATGCGCTGCTCATCCTCACGCAAAGCGTGGTCATAAAACCCGCTTTGCCAAACTTTACCGCGACGCTGTAATTGACGATTAACCATGGCTGCGGTGCAACCTTTTAGGTGCCGTATACAAGCGCTAAGATCGCTATGGTGCAGTAACACAAGCCCATGGAAGTGGTCTGGCATTAAGACCCAGGTTAACCATTGGCAGCCGCAAGCCTGCTCATTAGTTGTAATCGTGGTGCAAAATAGCTGTGCTAGTTTCGCAGAGGCAAAAAATGGTGTGCGTTTGTAACAACAAAAAGTAATAAAATACTCGCGGTGAATTTGCGAATAACGTCCTTTTAATAAATCACTATAAGGCATATTCAGCTCCTTTGAATATGGTGGACATTTAATTATAGCTCGAGAGTTACAAGGTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 199-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCD01000075.1 Pseudoalteromonas ruthenica strain S3136 S3136_S32_L001_R1_001__paired__contig_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 198 28 100.0 32 ............................ TTACTATAGAAATCTGCTTGATTCGGTTTCGG 138 28 100.0 32 ............................ GTCAGTTTCAGCGAGCGAGTTTTCTTCGCGTG 78 28 100.0 32 ............................ TGGCTTATATCAGCGAGTATCGCCTCAGCGGC 18 18 64.3 0 ..................---------- | ========== ====== ====== ====== ============================ ================================ ================== 4 28 91.1 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GAACAGGCAGCTTAGAAAAGTCATAACCTTCTTCAAGTAGCAACTGAAAC # Right flank : C # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 232453-232590 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCD01000015.1 Pseudoalteromonas ruthenica strain S3136 S3136_S32_L001_R1_001__paired__contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 232453 28 100.0 32 ............................ TCAACAAGGGGGCAGAAGCAGTCAGCGACAGT 232513 28 100.0 32 ............................ AGGTTGGCAAATTTAAGATTGCTTCTCGAGAA 232573 18 64.3 0 ..................---------- | ========== ====== ====== ====== ============================ ================================ ================== 3 28 88.1 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GTACCAGAAGACGTAACATGGGTGAGTTTTACTCGTCAGCATGTTAAATCACCTGGGCGTATTGATCGTGAGATGCGAGGAAAGGCTGAACGGTGGTCGGCTAAAAGTGGTAAGCCTTTAGTTGAATGCTTAGCAGAGCTAGAAAGCACCAAACCTTCTTCAAAATGTGACTTACCTTTTGTTTATTTACATAGTCAACAAACAAAGCAACGTTCACCAGACACCAATAGTAAATACCCTCTGTTTATTGCGTTAGCAAAAGTTGAAATTGACCAACAAGGAGTTTTCGATTGTTATGGTCTTAGCGCAAAATCAAATGGAGATAGAGAGTTGGGCTGTGTGCCACAGTTCTAACAAATAAAGGATTTTTTCCCCTTTATTTTTGTTCTTTAAAAATTTGCTTAAAATACAGTGTGTTGCAACATCCTGTGAAATTAAGGTGAAACTGGGTTTTTATCTTAATAGCTTGTTGCAACTTACTTTTTTTCATTTACTCTATA # Right flank : | # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //