Array 1 54199-53840 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000012.1 Clostridium sporogenes strain IFR 18/087 contig00012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 54198 29 100.0 36 ............................. AAATTAATTGCTCTATCTGAATCAAGGGCAATTATA 54133 29 100.0 37 ............................. GTTTGCATAATCTACAAGACACAATGAAGTACAAAAA 54067 29 100.0 35 ............................. AATTGAACGTTTAATATTGTTTTTTCTTGTGTAGA 54003 29 93.1 37 ...............GA............ CTGTATTTTTTATCAATTTCATTTAATTTTTGTTTCG 53937 29 96.6 37 ...............G............. GGGGTTAAATTATTTCCGTCTAAGACACTTATCGCCG 53871 29 89.7 0 .......A.......A............A | TTA [53844] ========== ====== ====== ====== ============================= ===================================== ================== 6 29 96.6 37 TTGAACATTAACATATGATGTATTTAAAT # Left flank : ATATGGCTAATGCTATAGTTAAAGGATTAGTAGGTACTACAGTAAACACACCAAGTCAACCATCTACAAATAATAATGATTGGCAGAACTTAGATGGTAAAACAGGTACTACATGTACACCAAGCGGTGTAAATGTAAGAGCAGGTAAGTCTACATCTAGTAAAATATTAGGGGCTTTACCTAATGGTGCAAAGGTTAAACTATATAGAAAAGAAGGAGATTGGATACATATATATTATCCACCACATGGAGGGTATGTGTATGCTAAATATATAAGATATTAAGGTTTAGAGGTATTTTCCTTCATGGAAATACCTTTTATTTTTCCAACCTACTTTAATTTTAAAACCTATCTTAGTCATTGCTATACAAGGATTTAAGGTAGGCTTTCTATATAAATTTTAAATTATCTCAATTGGTTGGAAAATTTTCTTTAGAACCTTGTAAAATCAATACTTCTATGTTATTCTTAAAAATAAGGAATGGCTATTTTGCTATGA # Right flank : GTGGTAATTGTAGCTTATGCTATAGTTATTATTTTTTTATTATTTAAAGGGATTTTTTAACATTTGCAGAATATTAAATATAACGGCTTCCCAATAGGCTAAACATATACTTCCTTCATAATATAAAAAAGAACCCTATTTATTGGGGTTCTTTTGTTGTAGAATTTTTATATTGGTGCTATGTTTTAGTCATTTTTATTATATCCATGTATAGAAAAATTAATCAATCAAAATATATAATATGTAAATTTTTAAAGGTACTTCTGTAATGGAAGTACCTTCTTTTTTTATTGGAAAAATCATTATAATTTATATAAATATTTCATAAAAAGTATTGACTTATTATAGTACATGTACTATAATATAATTGTAGGGAGGTGAGGGAATGACAAAAAAGAAGAAGTTAAAAAGGAAGGATAAAAAAGAAATAATCGAGTTAATAACCGCCACAGTTAATTTGATTATTTCCATAGCAACATTAATCTTACTAATACTAAAGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGAACATTAACATATGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 14245-11207 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000002.1 Clostridium sporogenes strain IFR 18/087 contig00002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 14244 29 100.0 37 ............................. TTGAATATTGCTTCGATTATAGTTGCAATAGGTGTAA 14178 29 100.0 37 ............................. TTTAACTATTATTGTATAACTATTATCATAGTGTATT 14112 29 100.0 36 ............................. ATTTTTTATTATTTGATTGTAATTTTATCTTGTAAT 14047 29 100.0 35 ............................. TAAACTATGTGTTCCAAAATTTTCTATATTCAAAC 13983 29 100.0 35 ............................. TATTTTTAACAGCTTCATAAAGTGAATCTTCATCT 13919 29 100.0 36 ............................. TAGGTTGAATCTTTTTCCATGTTTGAAGCTTATCTT 13854 29 100.0 37 ............................. TTGAAAACAACTTTTTCATCTTCTATATAGAAATTAA 13788 29 100.0 36 ............................. AGTTATCAATGACACTTATAGAGGCAAAGTTTTAAA 13723 29 100.0 35 ............................. ATAGGTATATATCTACACACTTTTATACCTATAGT 13659 29 100.0 37 ............................. TCAAAACTACGATATACAAATTCAATTTTTTGGTCTG 13593 29 100.0 36 ............................. GTAACTAAAGTAGCTAATATATCACTAATTGTTTGA 13528 29 100.0 37 ............................. TTGCATCTACAGTTTTTATATTACATGTTAAGAAAAC 13462 29 100.0 37 ............................. AAATTGATGACGCTATTCAGAAATCGAAAGATATTAC 13396 29 100.0 37 ............................. TACTACAATATCAAAGGGACACTGACCAAAAGATTGA 13330 29 100.0 35 ............................. CCTATTAGCGGTATTAGTTTAGTTGGAGAAAATGC 13266 29 100.0 39 ............................. CCAATTAGGTTGAACCCAAATACTTGGATCTGTATTACC 13198 29 100.0 37 ............................. GAATACAGATTTTACGAATTAAAATAATATCTTGTTA 13132 29 100.0 36 ............................. AGCAGTTGCTCTTGCTAATTTTTGTACGATAAAATC 13067 29 100.0 36 ............................. AGTAATATTATACAATAAAAAAAGAACCCAGTTTCC 13002 29 100.0 37 ............................. TATGCAAAGTTACAAGGTACTTGTCTGTCTTGTACAG 12936 29 100.0 37 ............................. TGTTACTGGGAATACCTATTTTATTTACAAATTTAAT 12870 29 100.0 37 ............................. ATATAATCACCTCAAATAAAAATTTTATCATTAGTGA 12804 29 100.0 36 ............................. TTGTATTTATAGTTGCTAAAGGTTTCCTTAAGTGGC 12739 29 100.0 35 ............................. TTAAACAAATCCTACAAATATTTTTACCTTTAAAG 12675 29 100.0 36 ............................. TTATTTTATTATAACAGAAAAAAACTAGGAATAATC 12610 29 100.0 37 ............................. ATGAAAGCGCTAGGCGTTAATATGTCAGTAGCTAATA 12544 29 100.0 37 ............................. GCGCTTAATTCTGGCAAATAAGTTGTATAAACCTCAT 12478 29 100.0 37 ............................. GAAGAAGCTTTTGACAAATTAAGAAGTGCTATTTCGG 12412 29 100.0 37 ............................. TATATATATTCATCACATCAAGAGATACCATTATTGA 12346 29 100.0 36 ............................. CACAGAACCATCCTCAATAGGAACTACTATTATTTT 12281 29 100.0 37 ............................. TTTAGAGATGATAGACGTTTAAACGGTATGCAATATG 12215 29 100.0 36 ............................. TATTTTTTGCCAGAATATAAAAAACCAGCTATTAAT 12150 29 100.0 36 ............................. CCCTATATGTTAATATTAACACAAAAAATATAACTG 12085 29 100.0 37 ............................. AGACTATCCATTTTTTCTCTTATCTTTGCTATTGCTT 12019 29 100.0 36 ............................. TTCTTAAGAAGTAATCATTTAGGCTTTTTTCAGCTA 11954 29 100.0 36 ............................. TAGAAGATGTTTTAGAGGATATTAGAAAACAATTTA 11889 29 100.0 37 ............................. TATGAAAATATTTAGAAATAGAATTTTTAAAACGTAT 11823 29 100.0 36 ............................. GAAAAAAAAGAAGTTAAGCAAGATTCTAAAATACCT 11758 29 100.0 36 ............................. GTAACTAATACTCAATATGGATGGGTAGAAGATGAA 11693 29 100.0 37 ............................. TTCAACATTTCTTGAACAGTATAAGATACTGCCTCAT 11627 29 100.0 35 ............................. TTGTAACTTATGATATAAGGACTATTTTTATAAGA 11563 29 100.0 37 ............................. CTATAGGATTACTTGGGGCAGTAGCTAATGGTTGTAA 11497 29 100.0 36 ............................. ATTTCATTTAATTCTGTTCCTAATCTTAGAGCTAAA 11432 29 96.6 36 .........................G... TAATTGTATGCTTGAATTATACCAAGCAAATCATTT 11367 29 100.0 37 ............................. GTAGAAACATTTAAATTTAAATCTGTTGTTTTTATTT 11301 29 96.6 37 T............................ AACAGCAATAAAAATAATTAAATTAGTAGAATTGAGC 11235 29 89.7 0 .............A......G..A..... | ========== ====== ====== ====== ============================= ======================================= ================== 47 29 99.6 36 CTTTTATATTAACTATGTGATATGTAAAT # Left flank : AGGTGATGATATATATAAACCATTAAAGGCTTGGTGGTGATAATTTATGTTTGTTATATTGACATATGATATAGAAGAAAAGAGAATTAATAGAGTTAGAAAAACGCTAAAAAAATACTTAGTTTGGACTCAAAATTCTGTGTTTGAGGGAGAAATAACAGAAGGAAAGCTACATAAATGCCTTTCTGATGTTAATAAATTAATTGACAAGAAGTTTGATTCAGTATATGTTTATAGAGTAAAAAATTCTAAAAATATAAAAAAGGATGTAGTTGGAATAGAAAAGAGTTTTGATGAATTATTTTTATAATTAGTTTTGCATTAAACCTAAATTTAAATTAATTAAGGTTAAACTATTGAAATTACTAGCTTTCTTGACAATAAAAAATAAATACTAAAAACGCTACTGAAGGTTTACTGCAAAATGTGGAAAATATGATAGATTAAGCATTGCTATAAATACAGTAATGGCGGTGGTTACAGGACTTTTGAATTTTAGG # Right flank : CATGCTTCATCTATCATTAAATCATGATCAACAATGGATTCTATATACTCAAATATTGAGAACCTAGCGGTATCAAAATCATAATATGTAGCTAAATTTACTTCTTCTTTCTTTAGCGAAGCGAGAAAGGGTTCAATATAGACATTATCATAGGGATAATCTTTACCGCTGAAAGAGTGAATTATATTAATTTCTTTAAATATGCTTAACTGTTATCAAGCTTAATTTAAGATTTTTGGAAAGATTTATGCTAGATTGCTGTAAAATTAATCAAGGTAGAAAGAAATCTGCCTTGATTTTATCTGCTTCTATAAGTTTGTATATTCATCCTATGAAGGATTTTAAAATTTATTATAGAATACTTAGTGTAGTTAATGAATGAAATAATGAAATTTGCTATATGATGTTAGGATGTTTTTAATAGTAAATAAAAGAATACTTATTTATTTAGGAAAATAAAAAGGGGGTTATACTAATGAAGATAATAGTTATTGGACCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 13930-13771 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000016.1 Clostridium sporogenes strain IFR 18/087 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 13929 29 100.0 35 ............................. TGTGCTACAAATCCTTCTTTTACAGTAGTAACACC 13865 29 100.0 37 ............................. TTATTTTCCAATTCTATGGCAGGATAACCACTCCAGT 13799 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 100.0 36 ATTGAACATTAACATAGGATGTATTTAAA # Left flank : ATAATGCAAAGAGAGATACCGTTGAACAGTAACATAAGATGTATTTAAATTGCTATCTCCTTAAACTAATTGTATAACATTTGTATAGTTGAACAGTAACATAAGATGTATTTAAATATACTATTCCTAATTTTTTCAATAACATCTTTAGGTTGAACAGTAACATAAGATGTATTTAAATTATAAATTTTGTTCTATCAGTTCTAATAGTTTTTCAGTTGAACAGTAACATAAGATGTATTTAAGCAGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTATAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGCAATGGCTATTTTATTATG # Right flank : CAAATTAAAATCCATGATTTTTTCCCTTTAAATTTGTTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATTTTAGACTTCTCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATAACAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGATATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGATCTGTTACTTTTACTTATAACTGCATCATTTATATTTGGCTAATATAAAATTTATTGTAGTTTTACTTATTATCATAGTTTTGTTTTTTTGTCAAAAAGTAATGAATCA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATAGGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 14476-14183 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000016.1 Clostridium sporogenes strain IFR 18/087 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 14475 30 100.0 36 .............................. ATTAATATCATGCCTAATAATGCAAAGAGAGATACC 14409 30 100.0 37 .............................. TGCTATCTCCTTAAACTAATTGTATAACATTTGTATA 14342 30 100.0 34 .............................. ATACTATTCCTAATTTTTTCAATAACATCTTTAG 14278 30 100.0 36 .............................. TATAAATTTTGTTCTATCAGTTCTAATAGTTTTTCA 14212 30 93.3 0 ............................GC | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 98.7 36 GTTGAACAGTAACATAAGATGTATTTAAAT # Left flank : AACATGAGATGTATTTAAATGAAGCTTGGTATTCATGAATATACTGATAACCACTCCGTTGAACAGTAACATGAGATGTATTTAAATTTTTTTGAATTATTCGTTCCATTTCTGACATTTTGGGTTGAACAGTAACATGAGATGTATTTAAATATGGTATAAAAATAGTTGGATTTGCTTATGGGGATACGTGTTGAACAGTAACATGAGATGTATTTAAACACAGAACCCAAATTTGTAATTTGGCGTGAATCGCTTACTCTTTCGAGAAGAGGAAAAGGAGTCTTATTAATGAGCATAATGTATATCCTATTTAATTAAATTTTTCCAAGTGAATTTAAAATTTAAACCTATTCTAGCTATTGATATATAAGGCTTGGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATG # Right flank : AGAGAACTTAAATTTGTGATTTGGTGTGAGTTGCTTACTTCTTGGAGGAGAGGAGTAGGAGTTTCATTAATTGAATTTTTCCAGGTACAATAAATTTGCAAACCTATTCTAGCCGTTGATATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGAAAACTTTTTCTATAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGCAATGGCTATTTTATTATGATTGAACATTAACATAGGATGTATTTAAATGTGCTACAAATCCTTCTTTTACAGTAGTAACACCATTGAACATTAACATAGGATGTATTTAAATTATTTTCCAATTCTATGGCAGGATAACCACTCCAGTATTGAACATTAACATAGGATGTATTTAAACAAATTAAAATCCATGATTTTTTCCCTTTAAATTTGTTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 15052-14754 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000016.1 Clostridium sporogenes strain IFR 18/087 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 15051 30 100.0 36 .............................. TCTTTTAAAAGCAATGCAACTATACCATTTTCTGTT 14985 30 100.0 37 .............................. GAAGCTTGGTATTCATGAATATACTGATAACCACTCC 14918 30 100.0 36 .............................. TTTTTTGAATTATTCGTTCCATTTCTGACATTTTGG 14852 30 100.0 39 .............................. ATGGTATAAAAATAGTTGGATTTGCTTATGGGGATACGT 14783 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 99.3 37 GTTGAACAGTAACATGAGATGTATTTAAAT # Left flank : TCACTTGGAAAAATTTCTGCAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAATTAAGAAATGGCTATTTTACTATGTTGAACAGTAACATAAGATGTATTTAAATATTATTGTATTGTAAGTTTTCTTAGTACATTCTTTCGTTGAACCTTAACATAGGATGTATTTAAATCCTCAATAGCCTTTATCTTAAGCCATATATTTCTATACGTTGAACCTTAACATAGGATGTATTTAAGGAGAGAGCCCAAATCTGTGATTTGGCATGAGTCGCTTACTCCTTCAAGAAGAGGAGAAGGGGCTTCTTGAATTGAATTTTCCCAGGCGTAACAAATTTTAAAACCTATTCTAGTCATTGAAATATAAGGCTTAGAATAGGTTTTTGTTTTGCATTTATAAAAAAACGTAATCACTTGGAAAATTTTCTATAAAACCTTGTAAAATCAATGTCTGTATGATATTGTTAGAAATAAGGAATGGCTATTTTACTATG # Right flank : ACAGAACCCAAATTTGTAATTTGGCGTGAATCGCTTACTCTTTCGAGAAGAGGAAAAGGAGTCTTATTAATGAGCATAATGTATATCCTATTTAATTAAATTTTTCCAAGTGAATTTAAAATTTAAACCTATTCTAGCTATTGATATATAAGGCTTGGAATAGGTTTTTGTTATGTGCTTATTAAAAAACGTAATCACTTGGAAAACTTTCTATAAAACCTTGTAAAATCAATACTTATATGCTATTCTTAAAACTAAGGAATGGCTATTTTACTATGGTTGAACAGTAACATAAGATGTATTTAAATATTAATATCATGCCTAATAATGCAAAGAGAGATACCGTTGAACAGTAACATAAGATGTATTTAAATTGCTATCTCCTTAAACTAATTGTATAACATTTGTATAGTTGAACAGTAACATAAGATGTATTTAAATATACTATTCCTAATTTTTTCAATAACATCTTTAGGTTGAACAGTAACATAAGATGTATT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 22853-22495 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000016.1 Clostridium sporogenes strain IFR 18/087 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 22852 30 100.0 36 .............................. CTTAATCACCTCCTTGGAGGAGTTCGAGCAAACCAA 22786 30 100.0 35 .............................. AATTAAAAAAATCAATTTGAGCTACTTTAGATTGA 22721 30 100.0 36 .............................. GGGTTGATAAGTCAAAAGACTTCTTTAAAAGAATTA 22655 30 96.7 35 ........A..................... ACTTTAATATTTATACCTTGCATAAGTTCTATTAG 22590 30 96.7 36 ......T....................... TAGCAATGACAAAAACTTTCTATATATTCTTTTATT 22524 30 80.0 0 .......CT......AG...........GC | ========== ====== ====== ====== ============================== ==================================== ================== 6 30 95.6 36 GTTGAACAGTAACATGAGATGTATTTAAAT # Left flank : TTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATTCTATATAAATTATATCATTTAAATAAAATATGTACTGTTGAACATTAACATGAGATGTATTTAAATAAGTAAAAGAACCAACAAAGACTATAGCGGTGGGAGTTGAACATTAACATAAGATGTATTTAAGCAGGGAACCCAAATCTCTGATTTGGCGTGAGTCGCTTACTCCTTCGAGAATGGGAGAAGGAGTTTCATTAATGAGTATAGCGTATATATTATATCTAATTAAATTTTCCCAAGTAAATTCAAAATTAAAGCCTATTATAAGCATTGATATATAAGGATTAGAATAGGTTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTGTATGATATTCTTAAAAATAAGAAATGGCCATTTTACTATG # Right flank : AGGGAACCCAAATCTGTGATTTGATGTGAGTCGATTACTCTTTCGAGAAGTAGGAGAAGGAGTTTCATTAATCATCCTAGCGTATATCTAATTAAATTTTCCCAAGTGAATTTAAATTAAAAGCCTATTCTAAGCATTGGAATATAAGGCCTAGAGTAGGTTTTTATTATACATTTATAAAAAATAAGAATCGATTGGGAAGATTTCTTTAAAATCTTGTAAAATCAATATTTATATGCTATTCTTGAAATTAAGGAACGGCTATTTTACTATGGTTGAACATTAACATAAGATGTATTTAAATTGTCCAGAAAAGTCTAATTCACCATCTTTATTTTTGTTGAACATTAACATAAGATGTATTTAAATTTTGTTGCCCTACAATTCAAACTAACGAAACCTTTTGGTTGAACAGTAACATGAGATGTATTTAAATTATGTTCCTAATTTATCAATCCAAATTGGAATATATGTTGAACATTAACATGAGATGTACTTAA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 5 23577-23736 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000016.1 Clostridium sporogenes strain IFR 18/087 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 23577 29 100.0 36 ............................. CATTTACTTCTGTTTTAACAGTTGCATTAACTTCAT 23642 29 100.0 37 ............................. AAAACAAAATGCAACAGATAACTTAAAGGAATGCAAT 23708 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 98.9 37 TTAAATACATCCTATGTTATTGTTCAACA # Left flank : TCTCCCATTCTCGAAGGAGTAAGCGACTCACGCCAAATCAGAGATTTGGGTTCCCTGCTTAAATACATCTTATGTTAATGTTCAACTCCCACCGCTATAGTCTTTGTTGGTTCTTTTACTTATTTAAATACATCTCATGTTAATGTTCAACAGTACATATTTTATTTAAATGATATAATTTATATAGAATTTAAATACATCTCATGTTAATGTTCAACCATAGTAAAATAGCCATTCCTTATTTTTAAGAATAGCATATACACATTGATTTTACAAGGTTTAAAAGAAAATTTTCCAACCTATTCTTATTTTTCATAAATACATAATAAAAACCTACCCTAATCCTTACATATCGATGACTAGAATAGGTTTTAAATTTAAATTCACTTGGAAAAATTTAATTAGATATGATATACATACTATGCTCATTAATGAGACTCATACTTCTCCTCTACAGGAAATAAACAACTTACTCCAAATCGTAAAGTTAGGTTCTCTGC # Right flank : CATAGTAAAATAGCCATTCCTTATTTACAAGAATAGCATATACCCATTGATTTTACAAGGTTTTAAAGAAATTTTTCCAAGTGATTTTGTTTTTTTTAAAATATATAATAAAAACCTATTCTAATCCTTATATATCAATACTTAGAATAGGTTTTGAATTTGAATTCACTTGGAAAATTTTAAATATACACAAGTAGTACATAACAAACACCACTATACTTATAAAATTTTAGTAAAGAGCAAAAACTAGATATGGATATAAATCCATTCTAGTTTTTGCAAAGGTTCATTTAAATATTTTTAGCTACTTCATATGCACTCCAAATAGCATACATAATATTTTGAACTTTATTAGCATCTCCAATCAGCCTTGCATTTGGAATATCAAATCTAACTTCACTATATAAGTCTTTTTCAGATAAATATCCAATAGCTACAACGGCACTATCAGCATTAATAATTGATTCTTGTCCATCTGTATTTAAAACAAAACCTTTATC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTAAATACATCCTATGTTATTGTTCAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 38742-38321 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000016.1 Clostridium sporogenes strain IFR 18/087 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 38741 30 100.0 34 .............................. CAATATCAAACGGTCAAATTAAAATCCCAGTTAC 38677 30 100.0 35 .............................. GAAAAAGTACAAACTACTTTAGATATATATTCACA 38612 30 100.0 37 .............................. TCAAAGGTTAAGACTTTATTCGCTCTACATTCTATAA 38545 30 100.0 36 .............................. TGCTTTAATAGTGCATTTTTTATATTATCTTCTATC 38479 30 100.0 36 .............................. TCACCTACACCAGTTACAGCTATTGCCCATTGCTTA 38413 30 100.0 33 .............................. TGGTCTGTTGAAGTCATATTGGCTTTTATCCTT 38350 30 83.3 0 A.......A...A............G...A | ========== ====== ====== ====== ============================== ===================================== ================== 7 30 97.6 35 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AATTTGATCCTTATTTAATCGTTGAACAGTAACATAAGATGTATTTAAAGGAAGAAATATATTCTTTCCTGAACCAAATTTGATAAGTTGAACAGTAACATAAGATGTATTTAAAGAGTAATGGTTCTCCTCCTATAAATTCTAATATGAGTTGAACAGTAACATAAGATGTATTTAAAGCTATTTGCTTAAAACTAGACCAAACCCCATAATGACAGTTGAACCTTAACATAGGATGTATTTAAGCAGAGAACCCAAATGTGGGATTTGGTGTGAATCGCTTACTCCTTCGACAAGAGGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGTGAATTAAATTCTAAAACCTATTCTAGGCATTGATATATAAGGCTTAGGATAGGTTCTTGTCATATGTTTATTAAAAAACGTAATCACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTATTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAATAAATAACTATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAATCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATGTAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCAA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 7 39546-38997 **** Predicted by CRISPRDetect 2.4 *** >NZ_SXEA01000016.1 Clostridium sporogenes strain IFR 18/087 contig00016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 39545 28 92.9 36 ........T......G............ GCGTTGTATGTGATGATAGAGTACTTTCTATTGTAC 39481 28 92.9 37 ........T......G............ GCAGGAAATTTAATTGGGAGAATTACAGCTATAAAAA 39416 28 92.9 37 ........T......G............ GCTATTACTAAAACTGCTGGACAAGTAAACGATAGCT 39351 28 92.9 36 ........T......G............ GCTAATATTGAAACTAGCTGTATTACCAGTGCCACT 39287 28 100.0 38 ............................ AGAATATAATAATTCTTTAATTTGATCCTTATTTAATC 39221 28 100.0 38 ............................ AGGAAGAAATATATTCTTTCCTGAACCAAATTTGATAA 39155 28 100.0 36 ............................ AGAGTAATGGTTCTCCTCCTATAAATTCTAATATGA 39091 28 100.0 39 ............................ AGCTATTTGCTTAAAACTAGACCAAACCCCATAATGACA 39024 28 89.3 0 .......CT.......G........... | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 95.7 37 GTTGAACAGTAACATAAGATGTATTTAA # Left flank : GCATAGAACTAATTTTGTCATAGGCATAGGTTAATCCAATGGTTAAAAAAAGCTCTGCGGTTATATCAGAATGAGTAAGGGTGTAGCGTCTTCCTAGAATAGGCTCTGTGCTAGTTATTCCATCTCTAAATTCCACTGAAAGTTTTTCAGGGTTCAATTTGCTCATTTAATCCCTTCCTGTACAATATTTCTCATAGGACTATTATATGATTAGGTGAAGTATTTTGTTATTTAGGTATGTATAAAATCTATTGTAATACCATTAGGGCTATATAAATTTATAAAAAGAATACTGAAATAAATAAAAGAAAAGAACAAAAACTTTTTCCAACTGACTCTAATTTGAAAATTTACCTTAGCCATTGATATATAAGGATCTAGGTTAGTTTTTTTATGTAAATTTCAAAATATCCTAATCGGTTGGAAAATTTTATTTATAACCTTGTAAAATTAATGGTTCTATGATATCCTTCAAATTAAAGAATGGGTATTTTACTATG # Right flank : GCAGAGAACCCAAATGTGGGATTTGGTGTGAATCGCTTACTCCTTCGACAAGAGGAGAAGGAGTTTCATAAATTGAATTTTTCCAGGTGAATTAAATTCTAAAACCTATTCTAGGCATTGATATATAAGGCTTAGGATAGGTTCTTGTCATATGTTTATTAAAAAACGTAATCACTTGGAAAACTTTCTTTAAAATCTTGTAAAATCAATGGTTATATGCTATTATTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATCAATATCAAACGGTCAAATTAAAATCCCAGTTACGTTGAACATTAACATGAGATGTATTTAAATGAAAAAGTACAAACTACTTTAGATATATATTCACAGTTGAACATTAACATGAGATGTATTTAAATTCAAAGGTTAAGACTTTATTCGCTCTACATTCTATAAGTTGAACATTAACATGAGATGTATTTAAATTGCTTTAATAGTGCATTTT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAAGATGTATTTAA # Alternate repeat : GTTGAACATTAACATGAGATGTATTTAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //