Array 1 4659-5784 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAU01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg strain STy019 Contig_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4659 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 4720 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 4781 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 4842 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 4903 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 4964 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5025 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5086 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5147 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5208 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5269 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5330 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5391 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5452 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 5513 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 5574 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 5635 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 5696 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 5757 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22019-23615 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAU01000023.1 Salmonella enterica subsp. enterica serovar Heidelberg strain STy019 Contig_57, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22019 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 22080 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 22141 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 22202 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 22263 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 22324 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 22385 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 22446 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 22507 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 22568 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 22629 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 22690 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 22751 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 22812 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 22873 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 22934 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 22995 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 23056 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 23159 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 23220 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 23281 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 23342 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 23403 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 23464 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 23525 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 23586 29 96.6 0 A............................ | A [23612] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //