Array 1 196959-198084 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVS01000002.1 Salmonella enterica strain BCW_6282 NODE_2_length_362616_cov_4.26689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 196959 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 197020 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 197081 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 197142 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 197203 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 197264 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 197325 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 197386 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 197447 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 197508 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 197569 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 197630 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 197691 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 197752 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 197813 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 197874 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 197935 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 197996 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 198057 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 214343-215939 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYVS01000002.1 Salmonella enterica strain BCW_6282 NODE_2_length_362616_cov_4.26689, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 214343 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 214404 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 214465 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 214526 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 214587 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 214648 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 214709 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 214770 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 214831 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 214892 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 214953 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 215014 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 215075 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 215136 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 215197 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 215258 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 215319 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 215380 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 215483 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 215544 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 215605 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 215666 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 215727 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 215788 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 215849 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 215910 29 96.6 0 A............................ | A [215936] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //