Array 1 1-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNDI01000021.1 Mycobacterium tuberculosis strain Bir 107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1 36 100.0 37 .................................... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 74 36 100.0 35 .................................... GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGT 145 36 100.0 38 .................................... CCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAG 219 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 4 36 100.0 40 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : | # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACTGCCCCGGCGTTTAGCGATCACAACACCAACTAATGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCATTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCCGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCACACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCACGTCGTCAGACCCAAAACCCCGAGAGAGGACGGAAACTCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGAGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCTCGAAATACAGGCTCCACGACACGACCACAACGCGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 2 382-1378 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNDI01000021.1 Mycobacterium tuberculosis strain Bir 107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 382 36 100.0 36 .................................... TGCCCCGGCGTTTAGCGATCACAACACCAACTAATG 454 36 100.0 37 .................................... CATTGACGATGCGGTTGCCCCGCGCCCTTTTCCAGCC 527 36 100.0 41 .................................... CACACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 604 36 97.2 40 .........................A.......... TCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 680 36 100.0 36 .................................... CCTCGAAATACAGGCTCCACGACACGACCACAACGC 752 36 100.0 37 .................................... CCTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAG 825 36 100.0 40 .................................... CCTGCGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGG 901 36 100.0 38 .................................... CAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCT 975 36 100.0 36 .................................... CCTCATGGTGGGACATGGACGAGCGCGACTATCGGG 1047 36 97.2 40 ......G............................. TCATATCGCCCGCCACACCACAGCCACGCTACTGCTCCAT 1123 36 97.2 37 ...C................................ CGGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 1196 36 100.0 37 .................................... CGCACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCA 1269 36 97.2 38 ..................A................. TTGAACCGCCCTTCGCGCGGTGTTTCGGCCGTGCCCGA 1343 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 14 36 99.2 38 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACGCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGTGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACCCTTCGACGCCGGATTCGTGATCTCTTCCCGCGGATAGGTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG # Right flank : CTACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 12304-14098 **** Predicted by CRISPRDetect 2.4 *** >NZ_CNDI01000073.1 Mycobacterium tuberculosis strain Bir 107, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 12304 37 100.0 36 ..................................... GGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 12377 37 100.0 37 ..................................... CAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCAC 12451 37 100.0 38 ..................................... ACACCTCAGTAGCACGTCATACGCCGACCAATCATCAG 12526 37 100.0 36 ..................................... GGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 12599 37 100.0 33 ..................................... AGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTA 12669 37 100.0 35 ..................................... CCGTCGACCATCATTGCCATTCCCTCTCCCCACGT 12741 37 100.0 36 ..................................... CGTGAAACCGCCCCCAGCCTCGCCGGGGCCGCCTAG 12814 37 100.0 23 ..................................... CTGAATAACGCGCAGTGAATTTC Deletion [12874] 12874 37 94.6 34 .CG.................................. CTTCTGACCACTTGTGCGGGATTAGCGGGCTTAG A [12878] 12946 37 100.0 35 ..................................... GCCCCGGCGTTTAGCGATCACAACACCAACTAATG 13018 37 100.0 37 ..................................... CGAGGAGAGCGAGTACTCGGGGCTGCCGTCTGCGCTG 13092 37 100.0 36 ..................................... GGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 13165 37 100.0 39 ..................................... CTGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAG 13241 37 100.0 35 ..................................... GCATTGCGCTAACTGGCTTGGCGCTGATCCTGGTG 13313 37 100.0 40 ..................................... CTGTGAGCAACGGCGGCGGCAACCTGGCGGCCACGGGGCG 13390 37 100.0 35 ..................................... GCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAG 13462 37 100.0 36 ..................................... GGTTCGCGTCAGACAGGTTCGCGTCGATCAAGTCCG 13535 37 100.0 35 ..................................... GCCCCGGCGTTTAGCGATCACAACACCAACTAATG 13607 37 100.0 40 ..................................... ACACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 13684 37 94.6 39 .........................A..........T CGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 13760 37 97.3 40 ....................................T CCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCAC 13837 37 94.6 39 .........................A..........T CGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGA 13913 37 97.3 36 ....................................T TGGAGCGTGTCACCGCAGACGGCACGATTGAGACAA 13986 37 100.0 39 ..................................... CAACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGA 14062 36 73.0 0 ...................T..-.C.CCC...C.TGT | C [14086] ========== ====== ====== ====== ===================================== ======================================== ================== 25 37 98.1 36 GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACC # Left flank : TTCAGTACGCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGTCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGA # Right flank : CCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCAGACCCAAAACCCCGAGAGGGGACGGAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA //