Array 1 57257-56861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYS010000088.1 Acidithiobacillus sp. VAN18-4 Contig88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57256 29 100.0 32 ............................. TTCTGCGACGGATTGTAGGGATTAACGCCTAG 57195 29 100.0 32 ............................. CTGTTCCACTAGCCCATCAGCGGATGTGCCTG 57134 29 100.0 33 ............................. CACGGCTATATCATAAAAACAAAAAAGGGTGCA 57072 29 100.0 32 ............................. GGAAACTACACGGTTAACATAGGCGACCATCC 57011 29 100.0 32 ............................. CAGAATCAGCCATCGCCAAGGCCGTAGGCAGG 56950 29 96.6 32 ............................T ATATCTAACACGATACAAACCCCAAGTGGGCC 56889 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.5 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : CTCGTGAAGGTGGCTACACTTGTGTAAGTC # Right flank : GTCACCGAGGACAGATGACCACCTCTGATTATGGATTCCCAAAGACTTCTTGGCCCGAAATATGGGCCAAGGCCAAGGATGAAAGCTATACCAGAAAACGACGTCCGACGTTGAAATCTGGTATAGCTTTCTCGCCGAAAACAGGATGCGCCAGAGCAAAAATTGGTGATGCCCTGACCGCAACCGTCACACCGACCGCGCAAGCTGGAAGGTGGGGCTGGGCGCGGGAATCGCCATCACCGGGGTGTCCAGAGGGGGCTTGCCCCCCTTGGCCTACGTGACGTAACGATAGTTACAGCTAGTAGGTTATGCCTTAAGGCGCATCCCAACCTACCGGGCAACGCGAAAACAGGCGTATCCTAGGGGCAGGCGGAGCGTCGCCCGACAGGCCGGAAGCCACCCCTGCAAGGCAACCGTCGCGACCGCTGAAGGCTGGGAATGACCGGGCGCATTGCTGATGGCGAAGGCCGCAAGGACCGGCGCGAACTCGAGGTTCTCCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.40,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16305-17494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYS010000076.1 Acidithiobacillus sp. VAN18-4 Contig76, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 16305 29 100.0 32 ............................. TAGTGGACGCGGCTGGAGAACTAACTTCAACC 16366 29 100.0 32 ............................. GAGCCATGCGTCATAGCCAATGCCAGCGGTCC 16427 29 100.0 32 ............................. GCAGCGGCTCGCTTGGGTTTGCCGCTGTGCCG 16488 29 100.0 32 ............................. CTGGCAAGCGTTCTGTTGCCTGTTCTAGATCC 16549 29 100.0 32 ............................. GTGCCATCGGGTACAACGGCAGTGGTTTTTGA 16610 29 100.0 32 ............................. CAATCCATATCCCCTGACGGAAAATCGCTCAC 16671 29 100.0 32 ............................. GCGGCAAACTCCGCGTCCGGCTCGGCTATGAC 16732 29 100.0 32 ............................. CAGCACTGACCGGGACATCAGATCCATCTTGC 16793 29 100.0 32 ............................. AGCTAAAAACGCCTTGGGGTCGATCATACATT 16854 29 100.0 32 ............................. GTGTCAATTCCGAACAGCCCCCCGGCCATGGA 16915 29 100.0 32 ............................. TTCTCCCGTCCATATCGAGCACGGCCTGCTTT 16976 29 100.0 32 ............................. ACTCAGATCGCGTACTTGACTAAGGCGTTAGC 17037 29 100.0 32 ............................. CGTCACCAGCAGTGCGTCAATGACCGTTGCCA 17098 29 100.0 32 ............................. AGGAATATTGTCGCTTGGCATCTGTATCTCCC 17159 29 100.0 34 ............................. CAGCAGGAATGGAGTACCCGCCGCCGTTATTCTC 17222 29 100.0 32 ............................. GGATTTTACGGTGGGCTGGTATTCCTCACCGA 17283 29 100.0 32 ............................. GAAGGATACGAATACGGGTACCAGAGCGCCAT 17344 29 100.0 32 ............................. CCACCCTTGCTGCGCTTCTTGCCCAAGTCGCG 17405 29 100.0 32 ............................. GTTTCACTTTTTACGTCGTCCTTGTGTATGCC 17466 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 20 29 100.0 32 GGGTTCCCCGCGCGAGTGGGGATGAACCG # Left flank : ACGCTTGCTGGAGCGTATCATCCCTGGCATAGAAGACATGCTTGCGGCAGGTGAAATCACGCCACCAGAACACTTTAAAGAACAGATTGGTCCCGCCATTCCCAACCCGGAGTCTATTGGTGATGATGGTCATCGTGCTTGAGAACACCCCTGCGCGGCTGCGCGGACGCTTGGCCATCTGGCTGCTTGAAATCCGTGCTGGAGTCTATGTTGGAAACTATTCTTCCAAGGTGCGCGGCTATATCTGGAGCCAAGTGGAGGCTGGCATTGGCGATGGAAACGCTGTCATGGCCTGGCGAGCGAACAATGAAGCTGGTTTCGACTTCATTACAATCGGTCAGAACCGCCGTACCCCTGCGGAGATGGACGGTGCGAAGCTCGTGAGTTTTCTGCCGCTGGACGATCAAAATGCTCTTTGACAATTTGCGCAATCAAACCAAAAAATCGGTAGATTTTGGTATTGTTATTTTTCTATGGTAATTCATAATATTGCAAGAAGA # Right flank : CATCAGCCGGTGCTGGCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTTCCCCGCGCGAGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //