Array 1 461972-462885 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILF01000004.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 461972 36 100.0 41 .................................... AAATTGGAGGGCGTAATGTCGAATATCGAATGGACTAGAGA 462049 36 100.0 38 .................................... GAGTAATACCAATCTTCCCACTGCCTGCTGCTGCATTA 462123 36 100.0 37 .................................... TCTTCCTTTTCCTGAGTCTCGCTAGACCACTCGCTGC 462196 36 100.0 37 .................................... GTGGAATTGACGCACTAGGAGAATTAACTTTAAATAG 462269 36 100.0 39 .................................... CCAGAACCTCAAGAGAACTAACAGAAGTCAGGCTATAAG 462344 36 100.0 38 .................................... TCTAGCTACAGACTCAGGCATATTTGCATAGTTTGTAA 462418 36 100.0 38 .................................... TTGACAAAGTGCCACTATCTGTGCTTTGGTTCTTCTTT 462492 36 100.0 35 .................................... TTTACACCCAATCCCTTAATGTTAGCTAAACCTAA 462563 36 100.0 34 .................................... AGAACTCTTTTAGCTAATGCGTGCTTACCAATAC 462633 36 100.0 34 .................................... CTAATTGAAGGGTACAAGGCTAACGCCTAAATAG 462703 36 100.0 36 .................................... ATATTGATGTTTGACCCAACATTTCCGTACTCTGCA 462775 36 100.0 39 .................................... TTTTCTACATTGGTCAAGAGGCGTTCGATTTCTTCGGGA 462850 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 13 36 100.0 37 ATCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Left flank : GGTTTTGATTTGGGATGGTTGTAAAAAACGTACAACTCTATCTCCGGCTGTGGCATTTGCAAAGGTGGCGATGGTAACTAAGATAGTATTGATAATTACTGCTGCTAGTCCTAAAGGTGCTATTAGCAAAATAATCAGTGTAATTGTCCCATTAAGAAATGCAACGGCTAAGTTCCGCACTAAGGCAGCACGATTAGAAATATACATGGTTTAGTTGGAATTCGGTATTAATTGTACTTTTTTAAGTTAAATCACACAGAAAATTTATACAAGTGATTTTATGCGAATGACGAATTTATTTATTTGCGATGATTTGTTAGCGGCGGGGTCAGGTCAATGGCGGAAATGCTGATGTTTCCGTTAACCCCGTCGATGTCTTTCTGTATAAAGGTTTCAGGGTTTTTTATTGCCTGGTTATTTTCGGAAAGTAGCCGCCAATTGATACCCCGTCGCAAATGGCATCTAGACATTAGGCACTGTATGGGTTTAGAATGATGGGT # Right flank : CTGTTGTCTAACCCAAATGACTTCTTAAACTCAAACTGCTCAAACTGTTCTATCGCTTATTTACTTAATTATTCCGGCTTTTTTTACTTTTGGTGTAGCAACCCCAGCATTAGCAAGTAAAGGAAAAGCTTTTGGTAAATGTATGTCAACAGCAACAAAAGCATCTATCAGACAAGACCAAAAAGACGGTAAATGTGGTAATGAGCCAGAGATTTATTATGGTTTATGTTGTTTGGGTATAATTGGTTTAGGTGTCGCAAATGAAGGCAAATAGAATATTAAAATTAATCATTTAATTAGATCCTAGATCCCAGATCCCCGACTTCTTTAAGAAGTCGGGGATCTTTTCTTTTCAATCATCGAGTAGTAGTTTTTTGAAGTCAGTAGAATTAGGTAAGTTATGATCTAGCAAAAATTGTTGATAAATTGATTCTGACTCGATTTGTATTTTGATATATTCTATGTTAGGAAGTGTTCCTGGTCGTAATCCTGCATATTCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCTTCTTTTATAGGAAGTGGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 587410-587161 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILF01000004.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 587409 36 94.6 32 ...-........C........................ AGAGCGATCGCATCCCACTAGCGATCGCCCAA 587341 37 100.0 36 ..................................... TTTTAAATAATAGTGATTTAGATGATTATAATCTTA 587268 37 100.0 34 ..................................... GGTGGCCTTCTACTGCTTCTGTTGGTTCTGGATC 587197 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.7 34 ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : AAATCTTTGGTGGACACGATACAAAGGAAGTAATTACCAAAGGAATTTCCGCAGAATCTGGTTTGAATTGGACAAAAGATGGTCAAGCGGAATTGAATAAGATTCCTGGTTTTGTGCGCGGAAAAGTGAAGCGAAATACCGAAAAGTTTGCCCGTGAACGTGGGTTTAAAGATATCTCGGCTGAGGTGTTGTATGCCGCTAAGGAATCTGTAGGTGCGTAGGTAAGAAGAGTGAGTAGTGAGGGCGAATATTTTAACCTTCGCTACTTGCTTTTTTTATATTAGTGTTTATAGTTAGAGACTTCCAAGAAATAAATTATCCTAAGAAACGAACCACAGAGGCACAGAGTACACAGAGAGAGAATTTCTGCATCAGTTTTGGGACATTTTTTTATTTGGAAGTCTCTTAGGAATGTGGATTAAATAACTTACAATTCTAAATGTTGTTGTGGTTTAGCAGTATAGTTCCACTGTGGCAAAAAATCATCAAAGAAAATCTCC # Right flank : ATGAATGCGTTATTCTTATTGGAATAATTCTTATTCAGGACTTACGCACTTTATAAGTTCACATTAATTCTTTTTCAATGAGTTCAATTAATTCCAGAATACTACGAGATTGGCTAGGTTCTACATTAGATTCTTCAATTATATGGACATGATGGGGAAAATTAGGTAATTTTGGAAAATGCTGCACATTATTGAACAGAATTCAGGAGTCAGGAGTCAGAATTCAGAATGAATTCTGTGCGAGTGGCGGATGAATAACTGGGTTTAAGACCCCCACCAAATCTACGATTTGGTGGTCTTTAATCAGTCGCAGGTTTGAATCCTCGACTGATTGATTCTGACTCCTGGCTACTGACTCCTGACTCCTTCTTCATCCCAACGTTTTCTTAAATTTTCCTTTTGTTCATCCATCCACTGATAACGATAACCAAGGGTTACAAAATGTCCCTCAATAATAGTAAAGGACTCTGCTATTTCTAAGAAATCATTATTTACTAAAG # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 1295889-1293303 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILF01000001.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1295888 37 100.0 35 ..................................... ATCTGCTAATTCCTTCAAGTAATTTGGATCATTTG 1295816 37 100.0 35 ..................................... CTAATTCATGGCTTATAGGTTGCAGCAGCCCCGGC 1295744 37 100.0 32 ..................................... AAGAACAAAAACAAACATCGGCACAAAATCAA 1295675 37 100.0 36 ..................................... ATTGATGAGCGATAGTGTACCCAGCAAAATAGTAAT 1295602 37 100.0 40 ..................................... GGGTGAGAAACCGCATAAATTGGATAGATGGTAACGAATG 1295525 37 100.0 35 ..................................... TAAACTTCCAGTCACAGAAATGCTATATAAGTCAT 1295453 37 100.0 37 ..................................... TAAAGATGGTTCGAGCATTTCTCTGTTGTCTAAAAAA 1295379 37 100.0 33 ..................................... AAAAATAGTTTTTGTAGATAAGCGATATTTTCC 1295309 37 100.0 34 ..................................... GTTAAGGCTGCTTGGGTAAAATCTGGCATCATGC 1295238 37 100.0 33 ..................................... ACTCAGGATGTGGAACGGCACTGTAATATTCGG 1295168 37 100.0 35 ..................................... ATTGAAGAGATTTACCTAAAATATATGACTCAAGT 1295096 37 100.0 38 ..................................... TAAGAATAGGGTGTCGGCGCAACGTTTTAAAGACTTGC 1295021 37 100.0 34 ..................................... AAGCAGGGCATGGTGGTAAATTCCTTACCACTGG 1294950 37 100.0 36 ..................................... CAGACCTGAGTCTTTATTCCCTAGCTATAATTTTTT 1294877 37 100.0 34 ..................................... CATTGATGAAACTTATGCCGCCATCGCGACTTCA 1294806 37 100.0 35 ..................................... TGGTTTACAGTAATCGTCAGCATTACCGCAATAAT 1294734 37 100.0 39 ..................................... CCAGAAGAATGTGGAATAGACCGAGTGATTTAGTTCCTT 1294658 37 100.0 33 ..................................... GGGATTACCGAGAAGATTATCCTACGCCTGCTA 1294588 37 100.0 36 ..................................... AATTATTTGAGTGTGAGGTACAGGATATTATAAAAA 1294515 37 100.0 35 ..................................... TCATAGCTTGCCTTCTTCCCACGTCCACCAACTGG 1294443 37 100.0 35 ..................................... TAGAAGTTGGAGGAGTGCTAGTTGGAGGTTTAGAA 1294371 37 100.0 33 ..................................... TAAGGAATTTCAGAAGAATAATTCCACATTGAC 1294301 37 100.0 42 ..................................... TGTTGAAGATTGTTTACTCCGTAATTCTGTCGCCAAAAAGAG 1294222 37 100.0 36 ..................................... AGTGACAGCGGAACTAACATCGGCCGGAGTACCAGC 1294149 37 100.0 34 ..................................... GGGGTGAAAATCCCCTTTTTTTATTTATGAAAAA 1294078 37 97.3 41 ............T........................ CTGTGAATCCTCAAACTTTGGCTGAATTATATGCTTTTGAG 1294000 37 97.3 35 ............T........................ CTATTCGCAGATCAAGAACCTTACTCAGGGAGCAT 1293928 37 97.3 34 ............T........................ CTTGACCTCTTTCTATTTTCAAAATGGGACTAGC 1293857 37 97.3 35 ............T........................ TTCCAAGAGCAGAAAATGGATTTAATTTTAAGCCA 1293785 37 97.3 42 ............T........................ ATGAATCAAAAGCTTTACCAGGTATAGAAAGCAAGCAAGCAG 1293706 37 97.3 37 ............T........................ ACTTGCCTTGGGGACTCGGTGTTGATAGCACCATCCC 1293632 37 97.3 35 ............T........................ TTAGCCAACTCTCCCTCGTCAATACCTTTATTATC 1293560 37 97.3 40 ............T........................ CTGGCAAAAGAACCGTTAGCGATTGATAGCTTGGCTGCAC 1293483 37 97.3 34 ............T........................ CGCAGTATCTACCGCCCCCGCAGTTTCCCTGGCA 1293412 37 97.3 36 ............T........................ TCATCTTCCTTCGTGTCGAAATATTTGTAGAAAATA 1293339 37 97.3 0 ............T........................ | ========== ====== ====== ====== ===================================== ========================================== ================== 36 37 99.2 36 ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGCCGGACTAAAATCCATAGTATCCTCAAATCCTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTGAGTTAACTGATACTCAATATGCTAAATTGCGATCGCGTCTCAATAAACTCATAAAACCTGAAACCGACAGCATTCGCTTTTACTTTCTTTGTGCTTGCTGTTTTGGTAAAATAGAAAGAATCGGTGGTGAACAGCCCCGTGATCAGACGATTTTCTTCGCTTAATGCGCGGGGGGGTGGGTGTAAAAAATTCAATTTCTCAAAAAATGCCTGAAATCATGTCTACACAAGCTTTTCATGCAGTTCATGGAGTTCACCCATCCGCGCACCTTGCACAGCAGGAGTTTCAGCTATTTTACTCCTTGACACTTTTCTTGAAATGGATTATCATGAAAGCATCCGCGCAACTGAACCTTGAAAACTACATATATATAGGCTTTCAGCACCCCGCG # Right flank : CGCCAACAAGGAATTATTGAGGGTTCGATAATTGCATTGCAATTTCACTTAGGAATGTGAATTAAATAAGGTGCAAAAGTAGGGTGTGTTAGCGACAGCGTAACGCACCATTCCAGGTTACATCAGAATTGCAGGTTATTAAATTTGCGTTCCTAACTAATTTTTTCCGGATAGAGATGGAATATTCAGCACTTATATTTTAGGGGGTTTTACTTTTTATCAGTGATGTAAGTGCAGTGACAATTATAAATTTTACACTTGCCATTTATCAATTGTTGAGTTGGATTAAGAAATTAGCCTTGAAAATAGGCTTTATTGTGGCAAATATATCTACGATTACCATTTAAAGGTATTCAAATTTAAGCTGGGCTAAATGCAATGATTGATACCCCTAATCAACAAAGGTAGAAATAATCAGGGTTATTAAATCATTATTTGCAAGTAAATGCTATGACTCAGATTACAAGATCACTAATATTTTCTGGCGATTTGGCACTAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : ATTGCAATTTCATTTACTCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 168528-168255 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILF01000005.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 168527 29 100.0 44 ............................. TTGGGGATATGGGATGTACCATTTTTGGGGATATGGGAATGCGA 168454 29 100.0 40 ............................. GTTTTAGGGTAGGGGATGTGAGGGGATGTGGGAGGTGCGA T [168449] 168384 29 100.0 20 ............................. TTTCGATGATGGGGGTGCGA 168335 29 96.6 23 ..........................A.. GTTGTAGGGGATGTGGGATGCAA 168283 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ============================================ ================== 5 29 98.6 32 TAGCGAAGCGCTGCTGCAAGCAGTTCGCT # Left flank : GCTATCATAGTCATGGCGCATTTAAAGACTAAAGCCACCACCAGTAATTTAACAGAAAGGGAGCAATGGAAATGGATATTAATTAGAGGACTTTATGACCGGGGCTTCACAAAAGAGAAAGTTATTAAGTTATTTAAAATCATCGACACAATGATGACTTTACCTAAACAATTGCAAGCAGGATTGGTTACTAAAATTAAACATTTCGAGGAGGAAAGAAAAATGCCTTTGATTAGCCCAACAGAACAACTAGCTATGGAACGGGGAGAGCAACAGCTAGTTATACGCTTACTAAATCGGCGAATTGGTGAAATTGAATTATCATTGATTGACTCAATTCGTAGATTAACAATTGATAAATTAGAATTATTGGGTGAGGCTCTGTTAGATTTTTCTTCTGTTACTGATTTAGAACAATGGTTACAAAATAACCCAGATGCTTGAGATTAATCATATTTATTAAATAGAGCGATCGCCTTTTTGGGGATGTGGAAGGGCGA # Right flank : TTCAGGGATGATGGGAGTGCGATAGCGAAGCGCTCCGCAGGAATCGCTTCATGAAGAGTACAATTTTCTACGCACAGGAGCAAAGGGAATTTCTTTACCCTTTTGTTGATAATCTTCCTTCACTAACTCCCAGGCTAATTTTAGTTCTTGCAAAGCTTCTTCAGGAGTATCACCAAAAGCTGAAATATTAGGTATTTCTTGTAAATGTGCTAACCAATCTCCTTGTTCATCAATATATAAATTAATTGTAAAGCCATTAAAATTATAATTATTTAAAGTCATTACTGATTTCCCTCTTGATATTCAAAGAACTGCTGAATTTGATAGAGTTTTGCTTTTCCATCTTTACGAGGTTGAATTGGTAAAGGTTTGCCACTCGGTGAATACCATAAACGATGACTTCCTTTTTGACGACTAAATTCCCACCCATTCTGAATGAGGAGAGTTTCAAATTCATCAAAAGTTAGATTTTCTGGACTATTTTTAGCTTTTTGCCATAG # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.43, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAGCGAAGCGCTGCTGCAAGCAGTTCGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 2 201654-203326 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILF01000005.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 201654 36 100.0 40 .................................... ATATTTACAAAAACAGCAAGGTTTTAGTCGTGGTGGCGTT 201730 36 100.0 40 .................................... TGGCAATAATTGGGAGTAATGGGGCGATCGCTAGATACAA 201806 36 100.0 38 .................................... TGAAGGAAGAAGTTGGCATCTACAAAACAACAATAACG 201880 36 100.0 35 .................................... AAAAGTAACATAGCTAAAGATTACTTAGAGATAGG 201951 36 100.0 41 .................................... TGTACAGCGATAGGCAAGAAGAAACTGACATACACACATAC 202028 36 100.0 39 .................................... CCAGAGGAATAACCTGTATCAATCCTAATTCTCTATCAA 202103 36 100.0 36 .................................... GACAAATTACAGCTATAAATGGCAGACTTTCCAAGC 202175 36 100.0 36 .................................... TTTAATCGTTTTGATAGCACCCAACCAATTTGTTAT 202247 36 100.0 43 .................................... GTGGTGAAAGATTTGAAGAGGGGGCAGAGTTAGACCTCGTTCC 202326 36 100.0 37 .................................... TCCGATAAGAAAATCTTATTGATCCCCTCGGATTGAT 202399 36 100.0 40 .................................... TATCTTTCATCAGATATCAGCAAGGATCAAAGATTATTTC 202475 36 100.0 42 .................................... TGGCGGTTTACCTACTGAGAACCTGTCCACCAAGAAACAACT 202553 36 100.0 36 .................................... CAGAAATCGAAGAACGCCAAGAAAAATTAAATAAGG 202625 36 100.0 41 .................................... TTGCATATTTCCAGGATAATCCCAAAAACCTCTTTAAAACT 202702 36 100.0 35 .................................... CCTGTAGCTACATGGTATGTAAATCCCAAAAAATC 202773 36 100.0 37 .................................... ATTCACCTGTTCTTGAGCGATCGCCCTGGATTCTCTA 202846 36 100.0 35 .................................... GGTTTCCTCTTCAACCATGACCCTGAAGATTATAT 202917 36 100.0 41 .................................... GATAAAGAATTATCCGATATAGATATCCAAAATTATATTCG 202994 36 100.0 35 .................................... TTTGATAGAGATAGAATCCCCTAAGAAAGAAGATC 203065 36 100.0 40 .................................... TTGATGATCATCTTAGATATTGGATAGGGAAAGGAATTTC 203141 36 100.0 42 .................................... ATAGTTGGGTATTTATTACTACGTCATAGGAATATATCGTTA 203219 36 100.0 36 .................................... TGAGTATTGCCGAAATAATCATTGAAGTAAGAAAAC 203291 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 23 36 100.0 38 GTTTCCATTCAATTAATATCCCCAGCGAGTGGGAAT # Left flank : CTGCTAATAGTATATTTGCTAATGCTTTACCACGAGAATCATCGGGGGTTTTGCCAATTTCAACCCAAGCTTTCATTACTTCTAGTTGTTTATAGAAGCTATTTTTACCCCGTCCTGTGTTGTCATGTAATGCCTTTAATACAGGGTCATGTAGTAACCCCCAAATCTTAGCCCGCCAATATTCTGCCGTCATCGGTAGATCCCCTGTGTAGCTTATAGATGAATTATAAGAGCGCGATTCAGTATTTGTCTAGGAATCTAAAATATCTCAAGATTTTTGTAAGGTTTTCTCTAACTCTTACTCTGTAAGCTTTTCCTCACTTTGAGAGTTTTATTACAAATATTTTCTTGTCTTTGACATGGGTTATTGTTTATGCAGCTATCAAGTTACAGCGTTTCCCTTACCAAACATTGATAGTTACAATTTACTGATTCTCAAAATATCAGTAAATATTTTATTATGTATTTATATATACTCCTGATGATCGCCTCCCTCCCCT # Right flank : TCCCTTCATTTTAACCCCTTGCTGTGCAAAGAGTCTAGACCCACTTTCCGAAGGTCAGCAAAAATCACCGCCAACCAGCCTACAAAACTACCATTAAAAACCGCGTAACCCTTATCCAATAAGCAACCGAAGTTCACAACCATAAAATCAACACTTCAGCTATTTTTCCCAAACATCGGCAACAACTAAATGATAATTGAACTAGGTGGTTCAATCACAGGTATTCCCACACCCCAAGTTTCCACTTGAGATAGAGTATGTCGAGACAAAGGATAAAACCTGACATTATCTTCTTCTAACTTCAGCTTTTTCCTCAACTGACGACGTAAATCTTGATATTTTTCTGTACTCAATTGACATTCAAACACAGAATACTGTACACGCTGTCCATAACCTTCCAATAAATCAGCTACTTTTTTGCGCCGTTTATTACAGGGAATATCATAAGCAATCACATACAAAAACATAAGTAGGTTAGCATTGAAAATTGTCGTTATGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATATCCCCAGCGAGTGGGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 3 315036-315421 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILF01000005.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ==================================================== ================== 315036 23 100.0 51 ....................... ATTTTCAAGAACAGCTTCAGGAATGTAAACGCTGCAAGTTTCCGCATATCT 315110 23 100.0 48 ....................... ATAAATACAAGCCGCAGAGAAATTCGGGGAACTGGTTTCCGCATATCT 315181 23 100.0 50 ....................... TGTAATTCTTCACCCTAGAACCGCATTATGGGACTGGTTTCCGCATATCT 315254 23 100.0 52 ....................... TCCCACTCTAGCTGGAATACGGCTTTGCCATACTCTAGGTTTCCACATAATT 315329 23 100.0 47 ....................... CAATTATAAACCGTTGAAGAAAAGCATCATATGGTTTCCACATAATT 315399 23 95.7 0 ......................G | ========== ====== ====== ====== ======================= ==================================================== ================== 6 23 99.3 50 AATCCCCGCAAGGGGACTGAAAC # Left flank : CTGATTATTTATGATTTACCTGACAATAAAGCAGCCAATAAACGCCGGACTCGTTTACATAAAATGCTCAGTGGTTATGGTAAGTGGACTCAATACAGTGTGTTTGAGTGTTTTTTGACTGCTGTACAATTTGCTCAGTTGCAAACCAAGATAGAAAAACTGATCAAGTCTGATGAGGATTCTATTAGAATGTATGTGCTGGATGCTGGGAGTGTGAAAAGAACTATTACTTATGGTTCGGAAATTCCTAGACAAGAACAGGCTATCATTATATAATTGATACATCAGCTTAAATTTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTAGAGATTCGCCAAACAGCCAGAACCTTGACAACTAAATACTTTCAGCGTTTCATTAGTTTCAGTTTGTGCTTGACCCAAAGCCTGAAATAAGGTTTTTTGAGAGGTCCGCCAAAATCACTCCTGGACTCCGCCCCCAGATTATGTTTCAGACGGCGGGGTTTCCGCATATCT # Right flank : GGTTGTAAAATGCGGATCATAAAAACCATCTAGCATCAAAAAAAATGCCGGAATCAGCCACATCTAGCAAACGTAAAAACCCATCAAAAAACACCCCTTTAATATGGGCAGATGATACCGAATTAGTTAGCTTAGTTTTTGACCTAGAAGTAACTGATTCCACCGCTCTCTACTCGCAATATACCATTGGACTTCATGCTTGGTTTTTGGATCAAGTGCGGCAAATTAACCCAACGCTTTCAGCATACTTACATGATAGTGAATCAGAAAAACCCTTCAGCATTTCTGCACTAGAAGGTCAATTACTGCCCACCGGAAAACAACTACAACTGCAAGCAAATCAGATATATCGTTGGCAGATAAACGCTATTTCTCAACCAGTAGTTCAGTTCTTGAGTCAGTGGTTAATACAACCGCCAACTACTTTGAAATTAAGGGATGCTTGCTTACAAGTAAAACAGATAAGTATTGTTAATCCACCAACTACTTACAACAAACTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.22, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 122990-122808 **** Predicted by CRISPRDetect 2.4 *** >NZ_VILF01000002.1 Dolichospermum flos-aquae UHCC 0037 new_Ana37_scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 122989 37 100.0 36 ..................................... GGAATAGTCCTGTTCATATTCTTTCCAATCTGCGGA 122916 37 100.0 35 ..................................... CGGGAATAATCGTCCACCGCTGGACAATTACGAAG 122844 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 3 37 100.0 36 CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTGAAAC # Left flank : GATTGTGGTACTGTAGAGTTAGATTGCCATTTTTTTGGAAAATTGCTCTACTTGGGATCTCCCCAAGACCGTATTTTCCGCTTTTGTGGCGGGATGTGGCGCAGCTTGGTAGCGCACTTCGTTCGGGACGAAGGGGCCGCTGGTTCGAATCCAGTCATCCCGATTGTTGTTGTCACTTGCCAGATTATTTGACCGCGTTGACAAATTGGTGTCCGTCTTGCCAAATTACTGTCCGCGTTGCCAAATTACCTAATCATCATCGTGTATTGGCATTGGAAGCTGTTACAATAATAGCTTTTATTTATTGGTATTGCTTCAGTTAGAGACTTCCAAGAAATAAATTATCCTAAGAAACGAACCACAGAGGCACAGAGTACACAGAGAGAGAATTTCTGCATCAGTTTTGGGACATTTTTTTATTTGGAAGTCTCTTACGGAAAATCCCGAACGAAGTGCGCCTTTCAACCCACCTAAAATGTTTTATATGCCTGCATAAAGGT # Right flank : TCCGCCCGACCAAACCCTTATCTGAAGACACTTCCAAAAGCAATTTTGGCGGATGTCCTAAATTTGCTCTTAATTTCCCTTTTAAGGGAGGATTATCAAAGCATCTCAACATCTGGAATACAGACTAGACAAGGGATTTGGACTTTTGGCAGAACCCCAGGGTTTTTGACCTCGCTTATGGTTCGCCAAAAATAAATAATTAAGGTGGATTCCTCCTTGCTCGGAGGTGATTCAGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTTCACGAGGAACAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCACGACTGTCTCACAACAGTCAACCTAACCCGCATTTATCGCAGGACAGAGGTTTATCAAAAACATGAACTGCGGCGCTATTGTTATTTCCTATTCTATTATCAAGGTTCGGTATTTTGTCAATCAGGCTTTTCGGGATTGATAGGCACTTATCGCTAAT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-11.60,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA //