Array 1 12593-11917 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXSF01000063.1 Staphylococcus equorum strain SNUC 2835 contig063, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 12592 36 100.0 34 .................................... TTTAGTTGTTTAATTTTTTCTTCTCTGACCATTT 12522 36 100.0 35 .................................... TTTGTATTTCTTAATTCTTATTATACTACTTTAAA 12451 36 100.0 35 .................................... GCTTTTTGCAATTCAACATCTTTTACCGTTTCTGT 12380 36 100.0 37 .................................... TCTATAAGTGAGTAATCTATTAGTATCAATATTGTTC 12307 36 100.0 36 .................................... TTTTCAATCTCTAATTTATTGATCACATATTCAACG 12235 36 100.0 36 .................................... TTTTCAATCTCTAATTTATTGATCACATATTCAACG 12163 36 100.0 33 .................................... CTACTTCTTCTTCGCTTAATTCATGTTTTTTAT 12094 36 100.0 35 .................................... GTCAAAAGCTTGTATAACGTCTTGAACGTCCTTCT 12023 36 97.2 35 ............................G....... ACCACATAACCGACTAATACAAGACCAATAACACT 11952 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== ===================================== ================== 10 36 99.4 35 AATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Left flank : TAACTGGGCAAACAGCAGGTGATATATTAAAAGATGTTGGAGTAAAGTTTGCACAAAATGTTGGAAAAGCCCAAATTAAAAGAATACCAGGAAGTGTACTAGTTAAAATTAATCAAAAAATAGGATTTAGATTAGTAACTAAATTTGGTGAAAAAGGATTAATTAATCTAGGAAAAATGGTTCCAGTTTTAGGCGGTGCAGTGGGAGCTTCATTTGACGTAGTTTCAACTAGAGCAATTGCAGAGATAGCTAAAAAAACTTTTGAGCCATTTGATCAAGATAATGATAGAGTAAGAATAATTATTAATTAGAGTTAAATTAATGACTGCTTTTTTATAGCGTAAGTAAAAAAATAGTCTATATATTTAGTTGTTGAAAAGAGAGATTAGTTTGTCAAAAAATATGACAAGAAGCACTTATAGCATGGTCAGTTTGTCACTATTTTTGACAGCAATTTTCACCTTTGAACTACTGATGTTATAGGCTTTAAAAAGCTATCG # Right flank : CTCATCTTGATGATCTCAATTGGCTTGGTTCAAAAGAAATCGATAACCTCCGTAGAATAGAGAATAAGTATTAAAAATATATTTGATTTGACAAAATATTCTGCAAAAAAAGGGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCATTTCTAAATAAGCAGAAACAAAATAACGTTCATACAAATAATTTCTTTATGATTAAGTTAGAATTAGAAAATCAATGCGAAATACGAATAACAGCGAATGGAACGTATATTATTGAGAGATTGGATGCAGTGTATTGCAATTCGAGAGTTGCTACTTAAGAAATTAAAAAGAAGAAAAACAATCTAACGAACATCAAAAAAATGTAAAATCGAATGAGCAAACGAAAGAGCCATCTGCCAATGATAAACAGAACTCTGGCACAACAGAAGAAAATAACAATGATAAAAATACTGAGAATAATAAAAAATCAAGTCAAAAACAAAAAAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCGACAACCACCCCGTAAAAGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 88537-89005 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXSF01000003.1 Staphylococcus equorum strain SNUC 2835 contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 88537 36 100.0 36 .................................... TTTTCAGCTTTAGTTAGTAGAGTTTCAATAGTTTTG 88609 36 100.0 37 .................................... GAAGTTATTCATTATATAATACAAGTATCAAATTAAT 88682 36 100.0 36 .................................... AATCATTTGCGATGAAGGTATTAGCAAAAGAACTAT 88754 36 100.0 35 .................................... AAATAATTGATTACATCGTTTTTTACTCCCGTTGT 88825 36 97.2 36 ...........G........................ TTGTTCATTTTTTATCATCCTTTTAATTTTATTTGT 88897 36 100.0 36 .................................... TGCTTTCAATTGGTTTAAGTTTGTCATAATAATCAA 88969 36 91.7 0 .................................TGT | A [88999] ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 98.4 36 GATCGACAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : TTGATTAATCGATTTAATAATTCTAACGCAACATTTTTTTGTTTCAGTCATTCGACATCTTTTAAAAAGTCATCAGACAGGATTGGTAAATCGGGTTGTTCAAGGCCTAGAGTTTAATAAGTGTCAAGTCAATGAAATCTTCAGTTAATAGCGTATATTTGATTATTATTAGTTTAAACATATTAAAATTAAATACTTATTATATATGGCTTTTTTATTATTTTAATATAGAAGTATATTTTACTTTCCTGAACAGTAGTTATTAAATTTATCTTTTATTTTAAATTAGAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGATTAATTATTAACGTATTAAATGTAGTATACTTTTAATATAAGGAAAATCATCATAATATTTGTCAAAAAAAGTGACATTTTATATAATAGCATGGTGTTAGTTGTCACAATTTTTGACAGCAAAAATAATAATTGAACCCTTGTGGTTATGCTAATTATTAAAGTATCG # Right flank : TAAATTTAATAACACTTTAAAAAATTGTAGATTTTTAATGAAATACGTATTGATTAATTTTTAGGGGTTGAAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTATTTGAAGAAATAGAAGCAATTATTTTTGATCATTGTAAAAGTTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATAATATTGCTATTATTTTTTGTGATAAAAAACATTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCTGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAACAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGATGTTAGTTCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGACAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [73.3-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA //