Array 1 1970585-1966954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001484.1 Saccharomonospora glauca K62 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1970584 29 96.6 32 ...C......................... CTCCGTAGTGGCCCTTATAGCGATAAACGAAC 1970523 29 96.6 33 ...C......................... GTGGCCGGGTTGATCCGGCTGCACTTTCAGCAC 1970461 29 96.6 32 ...C......................... TCCTCCAGAATCTGAAACGGTGTCCGGCCGGA 1970400 29 96.6 32 ...C......................... AGCGTGGTGGCGAACATCATCGACACCGCCGC 1970339 29 96.6 32 ...C......................... TGCGCGATCTTGTAAACGTCGGTGTAGGTCGC 1970278 29 96.6 32 ...C......................... GATTCTGATTGCGCCGTTGATCGCGGCCTTCA 1970217 29 96.6 32 ...C......................... TTTCGGCCCATCCGCGACACAGACCGGGCACT 1970156 29 96.6 33 ...C......................... CAACTCGCCAAGCGTGCCGAGCTGTCAACAGAG 1970094 29 96.6 32 ...C......................... ACTGGGGACGGCCCCGGACAACTCCTCGACGG 1970033 29 96.6 32 ...C......................... CAGCAGGAGCTCGGCGTGCAGGCCGCGGCCGA 1969972 29 96.6 32 ...C......................... CAGCTTGCGCTCGCGGTAGGTCTCCAGGACCA 1969911 29 96.6 32 ...C......................... ACTACAGACCCTCCGCGCTCAACATTCCAGTT 1969850 29 96.6 32 ...C......................... GACCGCCTCCACCGTGTCGGCCACCTCCATCG 1969789 29 96.6 32 ...C......................... GCCGCAGCGTCACCGGCGCTGTCCACGCTGGT 1969728 29 100.0 32 ............................. CTAGGAGAGATAACCAAGGTCGGACCGGAGAA 1969667 29 100.0 32 ............................. CAGGGTCACGCGGCTCGAATCGATCGGCAGGT 1969606 29 96.6 32 ............................A TTAGGGACGTACCGGAGCCCCCGAGAAATGAT 1969545 29 100.0 32 ............................. GCCTCGGCGACATGGAAAACCACCTTCCACGA 1969484 29 96.6 32 ............................A GCGACTCGACAGCAGGGGCGCCTTCGACGGGC 1969423 29 100.0 32 ............................. GACTGCGACCCGGAGGCCAAGCGGCCCCGACC 1969362 29 100.0 32 ............................. CGCTATTGGATGATTGTCTAGCCCCAGAAGAC 1969301 29 100.0 32 ............................. GCCGCCCTCGCCTGGATCGTCGAGGGCGCCGT 1969240 29 100.0 32 ............................. CGAGCCTCGTTGTCGAACCTCACGTCGGGGAA 1969179 29 100.0 32 ............................. GGACTGAGACGTCCTTTCGGTTCAGGGACCAC 1969118 29 100.0 32 ............................. GCCATCACGATCTCGTCTCTTCAGCCCGTGAC 1969057 29 100.0 32 ............................. CTCCGACTTGACCTGGAGGGTCGCCAACGCCC 1968996 29 100.0 32 ............................. GCCGCTAAGGTGGCAACTTTGCGTTTCGAGTG 1968935 29 100.0 33 ............................. GGCGTTCCCGCAGGACCTGTCCGGGCTCTACAC 1968873 29 100.0 32 ............................. ACCACTGGCATCTATGGGATGCTCAGCCAGCT 1968812 29 100.0 32 ............................. ATGGCGTCCGCGTGGAGGGTCGCCAGGACACG 1968751 29 100.0 32 ............................. TTCTGGTTGATGCGGCCGAGATAGGTGAGCAG 1968690 29 100.0 32 ............................. GTGTGGCCGGAGGCGCTGTTCTCCCTCAGCGG 1968629 29 100.0 32 ............................. CGTTGATGCCGTCGCACACCGCCTGCGCCACG 1968568 29 100.0 32 ............................. CCGGTCATTCGGTAGGCCCCCGGAGCAAAACT 1968507 29 100.0 32 ............................. GCGGGGCGCCATGGGGGGTGGCAGGCGCTCGG 1968446 29 96.6 32 ............................A ACCGGAGAGCGCGAATCAAATTACGGAAGTAC 1968385 29 100.0 32 ............................. TAACGAAGACACTGACGGGCGTTGAGGTTGGA 1968324 29 100.0 32 ............................. CCGTGATTGACGGGCACGCGGGCACGGCGTAC 1968263 29 100.0 32 ............................. ACGTCGCTGCGTCTTCCGACGGTGCCGACCGG 1968202 29 100.0 32 ............................. CATACCCACCTATCTAACTGTCAGCAAGCAGA 1968141 29 100.0 32 ............................. CCTATCTGGTGTAACAGTGGCCAGTCGGGAGG 1968080 29 100.0 32 ............................. GTCTGGCCGCGTACCGGACGATGGTCACCACC 1968019 29 100.0 32 ............................. TGGCTGGGTGGGCCAGTTGTCGCTGGAACACG 1967958 29 100.0 32 ............................. TCCACCACCCACGGGTAGTCGGCCGCCGCGTC 1967897 29 100.0 32 ............................. GGAGGGGCACCACCCCGGCAGGGCAGTGCCCC 1967836 29 100.0 32 ............................. GAAGCGCGGCTCGCTGGTGGACATCGTGACCT 1967775 29 100.0 32 ............................. CCGGCCACGCGGTCTGGATCACCCGTGGTTGG 1967714 29 100.0 32 ............................. TAGACCTGAGTCAGCGGGGATGGCCGGTCCTC 1967653 29 100.0 32 ............................. GCACCGCGCGGCTCACAGAGCCTCTCAGGCCC 1967592 29 100.0 32 ............................. ACTCGGCCGGTGTTCAGCGGGTCGAGGGCGGC 1967531 29 100.0 32 ............................. CGTGCCGCCACAGTCGAGGAGTTCTCCCTCGC 1967470 29 100.0 32 ............................. GCCGGAGCGCCAGGCGCGAGCCCGGACACCCC 1967409 29 100.0 32 ............................. CCACCAGGAGGGCGACCGTGCCTTTCGCCGAC 1967348 29 100.0 32 ............................. ATCTGATTTGGCCGTAGGCGGCCGATCGCGCC 1967287 29 100.0 32 ............................. CGGAGCACGCGATTCGAGGGAATCTGGGGGCG 1967226 29 100.0 32 ............................. CTCCTCCCACCATGCATAGACGTCGGCGAGGG 1967165 29 100.0 32 ............................. TCGTTGGACGCGTTCAACCGGGACCGGAGGGG 1967104 29 100.0 32 ............................. ACCTGGTAGACCGCGACGGGTGCCGATGGTTC 1967043 29 100.0 32 ............................. ACCCCACGGTGCAGGCGTTGGGTATCGGCGGG 1966982 29 89.7 0 ...C...................A.G... | ========== ====== ====== ====== ============================= ================================= ================== 60 29 98.9 32 GTGTTCTCCACGCACGTGGAGGTGGTCCG # Left flank : GACGTCCAGCGGCTCCTCGACCCTTCCATAGCCCAGGATCCCGGCGAGACGGAAGATCCGGAGGAAGTCGAGCTCGTGCATTTGTGGGACCCTGACCTCGGTGCGGTCGAAGCCGGGGTCAACTATGGCTGGGACTGGGAGGATTGAGCCCGATGCCCAATCTGGTCGTGATCTCCACTACCGCTGTGCCGGACTATGTGCGCGGTTCATTGAGCCGCTGGTTGACCGAGCCGGCTCCCGGTCTCTACGTCGGGTCGATATCCGCTCGGGTGCGTGACGCTCTATGGGAGCAGGTCAGCGCGGCCGTTGGAGAGGGGGCCGCAGTGTGCGTTCACCCCACTGACAATGAGCAACGCTACGTCATCAAGACCGCAGGCGAACGACGCCGCCAAGTCATGGACTTCGACGGTCTGCAACTCATCGCCTTCCGTGACCTGAACCCGCCGTGGCAAGAGAACCAAAACGAACAACTGCCCTTCTAAAACCGCAGGTCGCGAAGG # Right flank : CGGTAGGGGCGGCTGGGGAGACCGCCGGACGGACCCGTGAGAACGCGCTGGCGGCGCCGGATAACCAGATCGGTCTCTACGGTCGTGCCGTTGGCAAAGTGCAGTATCCGCGCGGTCCCCCGGCGGGCTGGACTGCGGGGCAGAGCGTCCTGACACGCTCCGGCAGTACTTCCTCGGCACCTGGCCGATTACTGAGCACCCACAGCTGGTCGAGTTTCACTGCCTGGTGGACTCCACGCCAGAGCTCCGCGCCTACGGCGGGCATGCGGGTCTGTCACACCGACAGTCTCGACGCAGCCATCTCCGATGGATGGACAGCGTGAACCACGACGCGTTGGATGCCGCGCGCTCGCCCGGTTCGTCCTCACGATCCCGGCTCTCGTCCCCCAATCGCCCTAGATCGCCGCGACGCCGTCGTCACAATCTTCGACATGCTCGTCCTCGGCTGGAAGCCACCGACGCCCTAGCCAGGAACCCATCGGGTGAGAGCATCGCGATCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1980115-1985582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001484.1 Saccharomonospora glauca K62 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1980115 29 100.0 32 ............................. AAGGGCACGGGCCAGGTGGCCCAGTCGTGGTC 1980176 29 100.0 32 ............................. CGGGTGTTCTTCACCCAGGTCGCGGGGGTGGC 1980237 29 100.0 32 ............................. CGAGCCTCGAACGACTGGCGGAACTCCTGAGA 1980298 29 100.0 32 ............................. ACGAGTTGGTGATCTCGCAGATACTCGCCATG 1980359 29 100.0 32 ............................. CGGCACCAGCACCAGCGAACGTGACGTGCACA 1980420 29 100.0 32 ............................. CGGAACCAGACGCCGGACCAGACCGGACCAGC 1980481 29 100.0 33 ............................. CGCGGCAACAAGCTCGTGATTACCGCCGGAAGC 1980543 29 96.6 33 ............................A GAGGGCGCGAGGAATTGTGACCGCAAGAGCTCG 1980605 29 100.0 32 ............................. GACACGGCGCCTCCGGCGGCCATGCTGGCGTT 1980666 29 100.0 32 ............................. GCTGCACGGACTGCACAGGGCGCGCGGTTATC 1980727 29 100.0 32 ............................. CCTCCCGGCTAGGTCGACTTCAGGTAGGGGCA 1980788 29 100.0 32 ............................. GCGATGCACGCTCTGGGGTGGGTGATCTCGTG 1980849 29 100.0 32 ............................. ACCGACCGGCCTTCGTTCGCGGGTGAGGGCCT 1980910 29 100.0 32 ............................. CTCGGTGTCACCGGCCCGTTGTCGGCGTACGC 1980971 29 100.0 32 ............................. GGCCGGCGGTCGGGTCGGCCGTTCGAGCTTGT 1981032 29 100.0 32 ............................. GGCGGCGGATCAGTCGAGAAGAGGATCGCCAG 1981093 29 100.0 32 ............................. GTGTCGAGGTAGTGCACCATCGGGTTGACGTC 1981154 29 100.0 33 ............................. CTGCGTCTTCGCGTCCCGCCACGCTTCCAGGAG 1981216 29 100.0 32 ............................. GTCAACGTCACGGTGACTGGCTTAGGGATGCC 1981277 29 96.6 32 ............................A ACAGAACACGACCCCGTACAGCGGGGCGGACC 1981338 29 100.0 32 ............................. AATCCCCCGTAGTGAGGCCCGTGAGTTCAGGT 1981399 29 100.0 32 ............................. CGACTCTCGATCCCGTTTCCGAGGGCCGAGGG 1981460 29 100.0 32 ............................. GTCGGCGAGGGTGCGTTTGGGTTCCCGGCGTC 1981521 29 100.0 32 ............................. GATACCGGGGAGGGGGTCTCAGGCCGTCAGAG 1981582 29 100.0 32 ............................. CCGGCTTTCGCTCCCTCGGTCAGCAGACGGAA 1981643 29 100.0 32 ............................. TTGGCCAGCTACGCGCGGTCCGGCGACAGCCT 1981704 29 100.0 33 ............................. ATTCCATCACCGGGGACCAGGTGCACCGCAAGG 1981766 29 100.0 32 ............................. TCGTGCAGCGAGGTCCCGATCCAGGTGCGCTC 1981827 29 100.0 32 ............................. ACGACCGCCACGGCCGTGCGGACACCCTCGAC 1981888 29 100.0 32 ............................. ACCTGGTGCGAGCGAGTCCGGCGCGTCGCTCG 1981949 29 100.0 32 ............................. ACGGGGCCTCCAGAGCGAATCTGGAGGCCCCG 1982010 29 100.0 32 ............................. GGGGGTGCCCGAAGGCGGCCACTGCCTCGAAC 1982071 29 100.0 32 ............................. CCACGTGTCCGCCGGCACGACCGCCACGTAGG 1982132 29 96.6 33 ............................A GGCCCCGCGAGTGTTCGCCGCACTCCGGGGCCG 1982194 29 100.0 33 ............................. CTGCGGAACTGGGGCCATTGCGCGGGCCAGATC 1982256 29 100.0 32 ............................. AAGAGGGCGGTTAACTAAGTAGACCTGAGTTA 1982317 29 100.0 32 ............................. ACTGGCGCTCGTGGCTGATCCCGTTGTCGGTC 1982378 29 100.0 32 ............................. TGAGAGGAATCGCGAGACATGAGCAGACTTAG 1982439 29 100.0 33 ............................. ACCTGGTGGGTATGTCACCCGAGGCCATCGTGG 1982501 29 100.0 32 ............................. CCATCCTCCGCGCGACCGAGGAACACCGGGTC 1982562 29 100.0 32 ............................. AGAGAGGGGAGTGTCGTGGTGGCCCTTATAGC 1982623 29 100.0 32 ............................. ACATTCTGATCGACCAGGAGAGAGCCTGGGCG 1982684 29 100.0 32 ............................. ATAGGTGCTCTAGTCCATCTGGGTGATATCCC 1982745 29 100.0 32 ............................. AGTCCCAGGCCTGACCACTAGCAACAACCGAG 1982806 29 100.0 32 ............................. ACGCACCTCCCCGGCGGTCCACTTCAGAGGGC 1982867 29 100.0 32 ............................. GTGTGTTGCTGTCCCATGTAACACCTCCAGAG 1982928 29 100.0 32 ............................. AGCATCGATGTCCTCGGCACGGCTCCGGCGGA 1982989 29 100.0 32 ............................. CCTGGGCGTTCTTCGTGGACGACATCGACCGT 1983050 29 100.0 32 ............................. CGCGCCGAGGACTCCCCAGTCTCGGTCGACGG 1983111 29 100.0 32 ............................. GCCGCCGTCGCGGCCGTCGGCACCCTCGCTAC 1983172 29 100.0 32 ............................. CTCCTCAACCTCATTGACCCCGAGGCCATCGA 1983233 29 100.0 32 ............................. GGGACCAGACGCAGCGGGTTTGGTGACACGGG 1983294 29 100.0 32 ............................. GTCTACAACGCCGCCGCCCACCTCTCGGCCAG 1983355 29 96.6 32 .......................A..... TAGACGCCGTCGGAACCCCACACCCTCGTCGG 1983416 29 100.0 32 ............................. GGCCATGTCAAGGTCGGACATGATGGGCGTGG 1983477 29 100.0 32 ............................. GAAGCACTCACCCGAGCCTTGGCGGACGTCGG 1983538 29 100.0 32 ............................. CACTACCGAAACGACTTGGCCAAGGCCATGAA 1983599 29 100.0 32 ............................. GCCAGTTATCCCGCTGCGGACTTTGACGATTT 1983660 29 100.0 32 ............................. GGGGCCTTTTGAACCTGGCTGTGTACAGAGAG 1983721 29 100.0 32 ............................. TGGCCGGGGAGCATGCGACGGTGCGTCCGGGC 1983782 29 100.0 32 ............................. GGCGTCGACGTGCGCCTGTCGTCGCCGGTGAC 1983843 29 100.0 32 ............................. GTTGTTCACGCTTGCCACACTCCCTTGTGATC 1983904 29 100.0 32 ............................. AATCCTTCCATCACTGGCGGTTTCCCCGTAGA 1983965 29 100.0 32 ............................. CGAACCCGAGCGTCAGCTCGCCGCGCCGGCGC 1984026 29 100.0 32 ............................. TAGTGGCCGAGCGACATCGTGTCGGTCTGCTC 1984087 29 100.0 32 ............................. ATGCTCGACGATGTCACCGGGCTGCCCTACGT 1984148 29 100.0 32 ............................. TCGGGCGCGGCGACCTCGGTTACGGGTATCTC 1984209 29 100.0 32 ............................. CCTTGGCAGCCAGGGCCACCACCGCGAGTACC 1984270 29 100.0 32 ............................. CACAATGCGTAATCTGCCGATTGATTCGAATC 1984331 29 100.0 32 ............................. TCGACGCCGTGTGCATGGGGTTCGCTGAGCTC 1984392 29 100.0 32 ............................. CTGTCGCCCGCGTTGTGAGACGACGCCACCGT 1984453 29 100.0 32 ............................. CAGCAGCAGGAGGCCGCCGCAGAGCAGGGTGG 1984514 29 100.0 32 ............................. GCTTTTCGGTTGCTCGTCGCCACTTGGTGTTG 1984575 29 100.0 32 ............................. ATCCTCGACGGTCTGCGCCAGCGTCACGACGT 1984636 29 100.0 32 ............................. GCATCTCGTCCTGGACTGGACCAGACACGCGG 1984697 29 100.0 32 ............................. ATCGGACGCAGCGGCGTCCGCGTCGACGGCAC 1984758 29 100.0 32 ............................. CGTGGACACCTTCTTCGTTGCCGTTGCCACAG 1984819 29 100.0 32 ............................. GCGCATTACGGCATCCACGTCGGCAAGGAACA 1984880 29 100.0 33 ............................. CCCGCCGAGGGCACACTGGACGACTTCTACCGC 1984942 29 100.0 32 ............................. CGGCCAGAGTGGGGCGTCACGGGCCTACGAGA 1985003 29 100.0 33 ............................. TCCCTGCGCGAGGACGGGATAGAAGACCTCGAC 1985065 29 100.0 32 ............................. TGGTGCGCCACCGCCTCCACGGCGTCGAGGTC 1985126 29 100.0 32 ............................. TGAAGGCCGCCGCCAAGGCGAAAGCCGTCGAA 1985187 29 100.0 32 ............................. AAGACACCACCACGGCGGGTCGGCCGCCCCGC 1985248 29 100.0 32 ............................. AACAGCTCGCTTTCCCGGCTTGCCTCGATGAT 1985309 29 100.0 32 ............................. GTCGGGTGATCGCGTGAACATCGCGGCCGTGA 1985370 29 100.0 32 ............................. TATTGTTGGGGTTGTCACGGAGCCCAACACAG 1985431 29 100.0 32 ............................. GCCCGATATGACCGCGAAGCCCCGCATCACCC 1985492 29 100.0 33 ............................. GTCAGGACCGCCGCGAACAGCTCCCGTTCAGAC 1985554 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 90 29 99.8 32 GTGCTCTCCACGCACGTGGAGGTGGTCCG # Left flank : TCGGAAGCCATATGTGAGAAGCCTCCTCATGCCTGCACCGCCGTCCCTCCGAATCCGGCAGATATCCTTCCGGGACACCGACCTGCTCCTGGAATCCCGGGGTCAGTTTGCCGACGTCATGCGCAGCGGCCCAGAACTCCAGAACGCGACACGTCTGCTCCTCGGTCAAGCCCACGGCTTCGGCCAACCCCGCCCGAACACGCGCGGACAGGTATCGCTTCCACAGCCAGCGCACCGCAGCAGCCGCATCGAGGCCATGGCATACCAGCGGGTACCGAGCCCCCTCCAGCCCCCGTTCCTTCCCCCAGAAACGAAGATCGACCAGCAACACATCCCCCAGATCAAGCTCTACACTCAGACCTGCGCGAACACAGTACTGCTGCGTTCGCGTCGACACGGTAGCGATCCACACCGACAAAAATGAGCAGATGCGCCACACCCCTTCGACGACACGCGACCAAAACGTGCAAACGATGAACTAAAGTCGCAGGTCACGAAGG # Right flank : GTGGCGCGCTTGCGTATCGATATGACCTCCGGCCGGAAACCGGCACGCCGGTGAATCGGTACACCTGGCTATCTTTCTTCCACGGCGCGGGCGGGATGGTCAATCGGCTGTTTCGGTCAGCGACGGAGACTCGAAGGACGATGCCCGAGGCGCCTGAGGTGGTGAGCAACAAAAAAACCGGCCGTCTGCGACGGCCGGTGCATCACCTGACACTCGGAGTGTCCGAGGGGGGACTTGAACCCCCACGCCCTTTACGGGCACTAGCACCTCAAGCTAGCGCGTCTGCCATTCCGCCACTCGGACTTGCTGGGGAATACTTTAGCCCATGCCCGAACAGCTCGTGCACGGGGGGTGCCCTTTCGCGCCCACGGCGAGTTCACCTGCGCGAATGATAGGAAGGTGCGGTGACCGAACCCAATCTGATCGACGAAGCCGCCGACGAGGCGGTGACGCTGACGAGTGAGCTGATCCGCATCGACACCACCAACACGGGTGATCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCACGCACGTGGAGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCACGCACGTGGAGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 2340904-2341296 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001484.1 Saccharomonospora glauca K62 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2340904 29 100.0 32 ............................. GCGCCTGCAGGCAACGCTGACGCGGGCCGCCA 2340965 29 100.0 31 ............................. CATCCTTCTCCGCAGGTTCGGGTACATCCGC 2341025 29 100.0 32 ............................. TCAGCGCGGATGCGATATCCCGCTGGCCGGCG 2341086 29 96.6 32 C............................ TAACCAGATCTTCCTCTACTCGCTCCTCGTAC 2341147 29 96.6 32 .....T....................... TAACCAGATCTTCCTCTACTCGCTCCTCGTAC 2341208 29 96.6 32 .....T....................... GACGTCCTGGCAGGTGAGGCGTCCCTCGCCGA 2341269 28 72.4 0 .G....-....T...GA......C..T.T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 TATCGGCCCCGCGCACGCGGGGATAGACC # Left flank : GCCTCGACCAGAGAGAGCCACCGAGGGCGATGAGGACACACCAGACGAGCGCAATCCACGCGTGGTTTCCGATCGGCCGGCCCATCAGCAGCCCGCGCAGGGTCTCGATGATCGACGTGAACGGCTGGTACTCGGCGAACCAGCGCAGCCCGGCAGGCATGGAGTCGGTGGGGATGAACTGATGCCCGGGGCGGTTCGCGGGGCTTGTTCGATCCGGGCGGAGTGCAGGTAATCGGCCTCGACGATGTGGTCGACCCTCTTCTTGCGTAGGTCTTCCGCGCGGTGGCTCGTCACGTTGGTCTACTTCTGCACCGGGAGGGTCATCGCGGGCTCGCTCGGAGGCGAGCATGCGGGCGCGGTAGTGGGCAAGCCACCATCTCGCCCAGTGGATGCCCGATGAATGCATCCTCAGGTGGGTTGGATCCCCTCCGGGATGACACGCATAACTTCAGAGTGAAGAAAAAATGGGTTACTGTCCCGTAGAATCGCTGGTCAGGAAG # Right flank : TGGGTTCGGCACGTGGTGCGAATATTAAGCGGGCCCCCGGCGCTACTCCGGGGGCCCGCTTAGAGCGTGTCTCGTTTGGATCTTGGTTGGGTTGCGGGCATGATCTTGGTTCGTGGTTGATGAGTTGTCGCGGCGGTTGGTGCCTGATGAGCTGTGGGCACTGGTCGAACCGCTGGTCCCTGCGCATCAGGTTCGTCCGCAGGGAGGCGGACGGTCGCGCGTGGATGATCGTGCTGTGTTCACCGCGATCGTGTTCGTGCTGACAAGCGGGTGCGCTTGGCGACACCTGCCACCCAGCTTCGGAGTGAAGGTCCCGACCGCGCATCGTCGCTTCACCGAGTGGACGAAAGCCGGATTATGGCGCAGGTTGCATCGCGCGGTACTCGATGAACTCGGCAGCCAGGGAATGATCGACTGGTCCCGCGCGGTCCTGGACGGAGCCTCCGTCAGGGCCAAAAGGGGGGATCTCTGACCGGTCCCAGTCCTGTGGACCGCGGGAA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCGGCCCCGCGCACGCGGGGATAGACC # Alternate repeat : TATCGTCCCCGCGCACGCGGGGATAGACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.90,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 4 2344477-2344870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001484.1 Saccharomonospora glauca K62 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2344477 28 100.0 33 ............................ ATAGTCGGCCGGTTGTCCGGGCCATACGTCGGC 2344538 28 100.0 33 ............................ GTCGAACAGGTCGCCGGACGAGCTGCTGGATGC 2344599 28 100.0 33 ............................ CGGAGACACCATGTCCGACGAGACGATCCGCTT 2344660 28 100.0 33 ............................ GGCCTCTAGGGGGCTTTAGCTTGGTGAAACACG 2344721 28 100.0 33 ............................ TACGCCAACAGCATCGGGATGAGCACTGCGGCA 2344782 28 100.0 33 ............................ GCGGTTGCCGGGCTTGGTGGCCTCGCGGGCCAA 2344843 28 75.0 0 ...........G..T........GTTTT | ========== ====== ====== ====== ============================ ================================= ================== 7 28 96.4 33 GTCGGCCCCGCACACGCGGGGATAGACC # Left flank : TGCGCCCTGTGCGGCGCCGAGCCCGTCGCTTGTCCCCATGCTGAGGCGTGGATGGTCGAAAGCCGCTTTTGCGTCGACTGCATTGACCGTTGTCTCAGCGATGCCCGCCATGGCCACTGGTGCCCCGTTGATGCCTTCGCCCACGACCAGGAAACAGGTTCCCGAGGTCGCGGCGATGAATGACGTACCGGTCGCCGTGGTCACCCCACCGCCCGAGACCGAGACCGAGCGGACCGCACGGCTCTGGCTGCCGGATACTTGGCAGTGGCCCATCCGTGACCCCGATCCCCCACCCGAGAACGTGATCGCCGAAACCCACACGGCACTACACCGGTGCGATGAGCCGACCCTGCCGATCCTGCACGCCGTCCTCACCGAACTACGACAGCAACTCCCCCACACGGCCCCGGAGACACCGGGGAGTGGAAGGGATTCCCTCCTGCGGTGGCAGACTGAATGAAAACTGCTCGTTGCTCGGGTAAACTCCCAGGTCAGCAAGT # Right flank : TCGATACGCGCCCACCTCGTTGGTTTCCCAGTGGGTGTGGGGTCGGGCTGGGATGGCGTGTTGGCCGTTAGGGCTTGTCAACCGTGCGGTGTCGAGGACTAGTGGCCAGGTGTTCCCGGGGCGGTGAGTGGGGTTTCCGGTTCCGGGCAGTGTGGTTGAGCGGCTTACTTCAGCCGTTGCAGGCCCCGGAGGGTTTCCTCCGGTAATTGCGATGCCGGTGGTGGGCATCATGGGCCTCCTTGGTGGAGGCATGATCAGGGTTTCGGTGGGGTGGTTCGGTGGTTGGTTGGCGCGCCGTCGAGTGAGGTGGGCGTGTCGTTCTCGGTCGTGGGGAGCACGGCTGTGGGCTGTTCGTGCTCGACCGTGGTTCAGCCCCAGTGATCGAAACCCAGTCCGGTTTGGCGTGATGCTCGGCCTTCGACTGCAATCGGTGGGTGAGTGGGTCGGCCGTGGTCATTGTGGTGGTGGGGTGGCCGTCATGTCGAGGCGGTTCGGTGTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 5 3410522-3410917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001484.1 Saccharomonospora glauca K62 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3410522 29 100.0 32 ............................. GTCCGGTCCTCTCGCCTAGGCTCCGGCCAGGG 3410583 29 100.0 33 ............................. CCACCGTTCAGCGGCGCGCGCGTCGCCGTCCAC 3410645 29 100.0 32 ............................. TTTTCTGTAATTACCGTGAAGTAGTCTTTCAT 3410706 29 96.6 32 ............................C AGCTTGTCGATGTTGCCGGTGGGGTTGTCGTC 3410767 29 96.6 32 ............................C TCCACCGTGCTCACCTCCACTCTGGGCGTCAG 3410828 29 96.6 32 ............................T GGCACTTCCTTACCGCGGTTGTTCCACAGGTA 3410889 29 96.6 0 .......................G..... | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.1 32 GTCGGCCCCGCGCACGCGGGGATAGTCCG # Left flank : ACGGTAGATCACAGCCGAGACCTCCGCCTCATCGGCCACACCGCGTGTCCCTCGGCGCCGAGCCAGGAGTTAGGCTGCTCGGTGTCGGGCCCGTAGCCCAATTGGCAGAGGCACACGGTTTAGGTCCGTGCCAGTGTGGGTTCGAGTCCCACCGGGCCCACCGACACGGATCGACCGGCGGGACACTGCTCCGCTCACCGCCTCGACGGGCAGGCGCAGTAGAAAGACGCGCCCATGCCGAAGCCTTCGCCCCGTTCCGTCTTCGGTGTGACCACCGGTGGCCCCTCTGGCCTGCCGCATATCCCCGCCCTCGCCGCTCCGAGAAGGCAGGCACCGGCCCGCCCTACAGACATCGGGCACGCTAGAAACACACCGCCAGCAACTCTCGAACCATGACAGAGACTGCCCCTCCCGGAAGACAGATGACCAATCCCCACCCACTCTGTGCCAGACTGAATGAAAACCACTCGTTGGCCGAGTAAAAGCCCAGGTCAACAAGT # Right flank : GGACCTCCGACAACGGAAAAGGCCTCGGAAGCTCTGCGGTGGCTGCTGGTGCGACAGTGATCTCCTACTGCCACATCCGGAACGTTCACCGGTGGCTCCGGCACCGCAGGCACTCACGGCGGCCCGCTCATGGTCGACGGTCATGGTCGTGGGCGGATTCGCACTGCTGACGCTCAGCCACAACGCGAAACGCCGGTAACCACCGCTGTGCCGTCGTGGTGGCTACGCTCTGCGGCAGAACCTGGTCGCAAACCGGGGTCCGACCACGCCGAGCGGAGGGTTCCCATGGGCGAGAACGACATAGGTCGTCGTATCCGTGAGGTGAGGGCCTGGCGGGGGCTGAGCTTGCGCGCGACCGCCGAACTGACCGGCATCACCCACGGCTATCTCGGGCAGATCGAGCGCGGCGAGAAACCCGTGAAGAATCGACAGTTGCTCGAGGCATTGGCTCGGACGCTACGGGTCTCTCCCGTGGAGTTCCTAGCCGACGCCTACGGCCC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATAGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3415156-3415794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001484.1 Saccharomonospora glauca K62 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3415156 29 96.6 32 ............................C CATCCACGAGATCAGCGGGTGGCCGGGGAAGA 3415217 29 100.0 32 ............................. CGGTTGCTCGGGTTCGACCACTACATCAGGGC 3415278 29 100.0 32 ............................. CCCATTCCGTACTGTTCGACCAGGCGCCGCTG 3415339 29 96.6 32 ............................T CCCGCTGGGTTTTCCCCTCCCCTAGCGGGCTT 3415400 29 96.6 32 ............................T CGATGGGTAGGCCACAGAGAACGGGTAAGCAC 3415461 29 96.6 32 ............................T CGGACCGTTGGGGTCGGAGTGTTCTCGCTGAG 3415522 29 100.0 32 ............................. CGTTGAGCTGATGGAGAAGCCGCCGGGAAGCA 3415583 29 100.0 32 ............................. AACCACAGCCCGTCACGGCCCTGGTGCGGCTC 3415644 29 100.0 32 ............................. CGCGAGTGTGGGTACGCGCTTCCTCGGGCCTG 3415705 29 100.0 32 ............................. CACCGGATCAGCACTCCGGTGTGGGTATGGGC 3415766 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.5 32 GTCGGCCCCGCGCACGCGGGGATGGTCCG # Left flank : AAGTCGGCCAGGCATTGCGAACTCTCGCCGAGGACATGATCGCTCGCGCCGACGAACTCGACACCACGGCAGTGGTCGGTGCCCAGTGATGCCCCGACCGCTCCGAGGCCGCCGTGGTCGACGACCGTCCGACGCGGCTTCTCGGTGGCCTGTTGCATACGCCAATATCTCGGCCTGCACAACTCGGACTCCCAGTTGGCGGTCTGACTCCGGATGAGGTTGAGACATTGCCTCAGGGCGTCGCTCACTCCGGTACTACGCGCGCTGAGGTTCGCGATACCGTCGGTTGCGTGCGAGTCAGGGAAGAGCTACGGAACGTGTCAGTCCCACGTGGTAGTGATGTCGCTGCACCAAGCCCTTGCCCAGACGTTCGCCCCACCCACATGTCCCGCCATCCAACGACTACCTCCACCGGAGAACAGATGACCAGCCTCTACCCGTCCCGTGACAGACTGAATGAAAATCGCTCCTTGACCGAGTAAACGCCCAGGTCAACAAGT # Right flank : CGCAGTGCGCTTCGCTCCAAGGGCCAGGCGGTGCCACCGCATGTGGCCGGTCATCCGGGTGCGCGGCTGATGGCCTGGGCCGGGTTCGGCACCGTGATCTCGGTGGCGGCGAACGTACTGCACACGTGGATTCCGCAGCAAGGCGTAGCAGTCCGGCCTAGCTCCGCAGCTCGGCGCGGCGGTGTGGCCGCTGGCGCTACTGCTGTCGGTCGAGGTGCTGTCGCGGGTAGCGTGACTCCGGGTAACAGTGGACGGCAGCGAGATTCGGCGCCGTCACCGTGGTGGCCGAGGCGGCAGTGATCTCTACGGCCATATCCGGGACGTGCTCGTTCACTGAGGCTATGGCACCGCAGGCGCGCACGTCGGCCCGCTGGTGGTCGACGGGTTGGTGATCGTGTGCGGGTTCGCGCTGTTGGCGCTCAGCCGTGATGAGAAACGCCGAGGAGTCGAAGAACGACATGTCAGCGACATCCACCGCTGAGAGGACACCCCACATGGTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCACGCGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3418788-3419059 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001484.1 Saccharomonospora glauca K62 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3418788 28 100.0 33 ............................ GCGGACGTTTGGGCGGCTATCGCGGACGCCGCG 3418849 28 100.0 33 ............................ GTTCCGCAGGATCGCCCACAGCCACGAGCCCTT 3418910 28 100.0 33 ............................ CGGCGGCCGCCTCGGCCGCCTCGGCCGACGCTC 3418971 28 100.0 33 ............................ GTAGCCGTCCTCCTCGTCGAGGTCCCAGCCACC 3419032 28 89.3 0 .....................G..CC.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 33 GTCGGCCCCGCACACGCGGGGATAGACC # Left flank : CTGTGCGGCACCGAGCCCGTCGCTTGTCCCCATGCTGAGGCGTGGATGGTCGAAAGCCGCTTCTGTGTCGACTGCATCGACCACTGCCTCAGCGATGCCCGCCACGGCCACTGGTGCCCCGTTGATGCCTTCGCCCACGCTCAGGAGACCTCTTTTCGAGGTAAGGCCCGTCTCGATGCATGACTCACCCGTCGTCGTGGTCACCCCACCACCCGAGACCGAGGCCGAGCGGACCGCACGGCTCTGTCTGCCGGACGTCTGGCAGTGGCCCGACCGTGACCCCGATCCCCCACCCGAGAACGTGATCGCCGAAGCCCACACGGCACTACACCGGTGTGAGGAGCCAACCCTGCCGATCCTGCACGCCGTCCTCGACGGACTCCGGCGACAACTCCCCCACACGGCCCCGGAGACACCGGGGAGTGGAAGGGATTCCCTCCTCCGGTGGCAGACTGAATGAAAACCGCTTGCTGCTCGGGTAAACTCCCAGGTCAGCAAGT # Right flank : CCAGTGGACGTGTCTGGTCCAGACCAAGACGAACGCTCCGCTCACCCAACGCTTTGCGAGTGCCCCGAGGAAGTCGGACACGTCGCTCACGCCCGCCTCCTCGGGGCCGTGTTCTATGCGTGGATGGTGATGCGTCGGCAGGTGTGCGTGCCGCCCTCGGGGCCGTTGAGGACCACGCCGTGCAGGTGCGCCCGACCGAAGGTGGTCTGGTCGGCGTCGGTGAGGGTGTGGTCGATGACCAGTTCGTCGTCGAGGAAGCAGCGCACCAGCGGGCCCCGGATGTCGACGCGGTAGCGGTGCCACACGTTCGCGGCGGTGTCGCCGTAGACGCCGGCGAGTTTGGTGGCGGTGCCCTTCTGCCGCTTGTACAGGCGCAACACGGTGCCGCCCGACTCCGCGGTGAACCACAGGTAGTTGTCGGGGTCGACGGCCCGCACCACCACGCCGGTTCCGGACATCCCCGTCCACCGCATATCGGCGGTGACGGTAACGTTCGCGGA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACACGCGGGGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //