Array 1 2231069-2230709 **** Predicted by CRISPRDetect 2.4 *** >NC_009697.1 Clostridium botulinum A str. ATCC 19397, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2231068 30 100.0 37 .............................. TACAAGACTATATTGATAAGCATTAAGGTATAATTTA 2231001 30 100.0 36 .............................. AGTTTATCTCATTTATTGATGCGGATTTGATGAAAT 2230935 30 93.3 36 ........G......A.............. TGAACTTATAATATATAATGTAATTAAAGGTTAAGA 2230869 30 100.0 35 .............................. TCTTTAGCGTCTTGATCTATACCTATATATTTAAG 2230804 30 96.7 36 ..................G........... CCAGTTAATTTATCTATAACCTTAAATACCATATAA 2230738 30 90.0 0 ...............AG............C | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 96.7 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTTTTTGCAGTAAACATTTATGATACGATTGTTTTAGATATAGGTCTTTTTTGTCATAGTAAAAAAACTAGAATACCTGGTACAGAGGATATGGATAAAGAATATAGGAGTCCGTGGCATCATATAAAAGGGGCTGGTATTGGAACTATAATAGGTGCTGTAGTAGCATTATTATCTGGAGGAATGGTTCATTTTATATCAATAATATAGTATTTAAGCAGGGAACCCAAATCTACGATTTGGTGTGAGTCGCTTACTACTTCGAGAATGGGAGAAGTAGTTTCATTAATGAGTATAGTATATAGCTTATATATAATTGAAGTTTTCCAGGCGTAACAAATTTTAAAACCTATTCTAGCTATTGGTATATAAGGCTTAGAATAGGTCTTTATCATGTGCTTATGAAAAAACAAAATCACTTGGGAAACTTTTTCTAGAACCTTGTAAAATCAATGGTTGTATGATAATCTTAAAAATAAGGAATGGCTATTTTACTATGG # Right flank : AAATTAAAATCCATGATTTTTTCCCTTTAAATTTATTTAGTTTTTAGAGCAGCGTTGATAATATATCAATTTTTAAGAGAAGCCATTTTAGACTTCCCTTAAGTGGTATTTTATTTAATTGTATAAAGTACATTAGTTAAAACTTATTTTTTCAAATGTACCCTTTTCTATGTGTAATTCAATATCAATATCTGCTTTTTTATAACCTACTAATTTTATACGATTATTACCTTTTTTTATTGGTAAAGTTAATGATGTTGTTCCTTTCATAGTGGCTTTATCTGTATTTTCTACAAGATTAACAACCGTATTGTCAGGAGACATTAAAACGATTTTTGCCTTTCCACTTTTTACTGATAAGATATATGGAACTTTCAAATCAAAATCAGAACTACTTTCATATGTCCAAATAGTTCCACTTCCACTTAATTTCAACTTCCCTTTATATATTCCAGATTCTATGATTTCATCACTTTTATCTAATCCAAAAGTATCATATA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 2238000-2237705 **** Predicted by CRISPRDetect 2.4 *** >NC_009697.1 Clostridium botulinum A str. ATCC 19397, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 2237999 30 100.0 35 .............................. TCTAAATCTTTTGCACTTGCTAATTTACCTTTTTC 2237934 30 96.7 38 .................A............ TTAATATATTTACCAAGGTTTTATATTATCATACTTAA 2237866 30 100.0 36 .............................. ACTACTGCAGTAACGGAATGTGGTGGCAAACCTAAT 2237800 30 100.0 36 .............................. AAGGGTTCTCCACACTCTAGTTCTTTCATAAGTTCA 2237734 30 90.0 0 .......................C....GC | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 97.3 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TTAAGCAGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAGGTTGAACATTAACATGAGATGTATTTAAATTATTTACATTCTGTTATACCACAACATTTACAACATGTTGAACAATAACATAAGATGTATTTAAGCAGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATG # Right flank : AAGAAATGCAATCATCTGATTTAGAATAATCATTTATACATGGCAATAATTTTTTGCTTTATTACTTCTTGAGTTAAATTGTGGGATTTTATTGACTAAAATATTTTTAAAATATAGTTTTAATTTTGGTTGTGCTTTAAAGTAGTGTTGGAATTTTAAACCCCATTAAAAGAAGTTAAATATTTTCTTTTAATGGGGTTTATATAAATTGTAAGATACTAATTATTTAAAAATTTATTTAATGAATCATTATCTTTAAATAAGTCTTTTAAGTTACCGTATTTTTGTCCTAAATTTTTTCTATCATATTTATAGGATTCTTCTCCTATATTCTCTACATTAAATTTAATAATTTCAGCATTTGGTATAAGAGACAATAATATCACTGCATTCTTTTCTAAGAGTTCTTCAACTTTTTTGTCCTTCCAAAATTTATTATAATTTTCTTCCCCTAAATTTTTATTTGTTTTATAGTTAACGGTTATTTCATAGGGCTCTTT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 2238790-2238280 **** Predicted by CRISPRDetect 2.4 *** >NC_009697.1 Clostridium botulinum A str. ATCC 19397, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 2238789 30 100.0 35 .............................. AAGGCAGTTATACAGGTTAATAGATTGGTTTTATC 2238724 30 100.0 38 .............................. ATTTGTCCAAATAACAATATTTATCACCCCCTATTCGT 2238656 30 96.7 36 ................A............. TTTCTATTTTCTTTAAAAAATTGCCTATCTACATTT 2238590 30 93.3 37 ............T....A............ ATAGATAAACAACTCTGAAGATATGCTTTGCTTACCA 2238523 30 76.7 118 .......CT......GAT..........GC AGAGAACCCAAATCTGTGATTTGGTGTGAATCGCTTACTCCTTCGAGAAGAGGAGAAGGAGTTTCATTAAATAATAATTAGACACTTAGTATTTTAAGCTTAAGTATGATCTGAAAAG 2238375 30 90.0 36 ........T......GA............. TATTTACATTCTGTTATACCACAACATTTACAACAT 2238309 30 86.7 0 ........A.......A...........GC | ========== ====== ====== ====== ============================== ====================================================================================================================== ================== 7 30 91.9 50 GTTGAACAGTAACATAGGATGTATTTAAAT # Left flank : TAAGGATTAGAATAGGTTTTTATTATGTATTTTTTAAAAAGCAGAATCACTTGGAAAAATTTCTTTAAAACCTTGTAAAATCAATGGGTATATGATATTCTTAGAAATAAGGAATGCCTATTTTACTATGATTGAACAATAACATAGGATGTATTTAAATTCTTTATATAGATGCATATCTTCTAATACTCCACCTGTTGAACATTAACATGAGATGTATTTAAGCAGGGAATCCAAATTCCTGATTTGGTATGAGTCGCTTACTCCTTCGAAAAATAGAAGAAGTAGTTTTATTAATGAACATAGTGTATATATAATTAAATTTTTCCAAGTGAATTTAATCTTCAAACCTATCCTACCCATTGAAATATAAGGATTAGGATAGGTTTTTATTGTGTATTTATGAAAAAACAAAATCACTTGGAAAAATTTCTACAAAACCTTGTAAAATCAATGGATATATGATATTCTTGTAAATAAAGAATGGCTATTTTACTATG # Right flank : AGAGAACTCAACTTTACGATTTGGAGTAAGTTGTTTATTTCCTGTAGAGGAGAAGTATGAGACTCATTAATGAGCATAGTATATATATCATATCTAATTAAATTTTTCCAAGTGAATTTAAATTTAAAACCTATTCTAGCCATCGATATGTAAGGATTAGGGTAGATTTTTATTATGTATTTATGAAAAATAAGAATCGGTTGGGAAAATTTCTTTAAAACCTTGTAAAATCAATGTGTATATGCTATTCTTAAAAATAAGGAATGGCTATTTTACTATGGTTGAACATTAACATGAGATGTATTTAAATTCTAAATCTTTTGCACTTGCTAATTTACCTTTTTCGTTGAACATTAACATGAAATGTATTTAAATTTAATATATTTACCAAGGTTTTATATTATCATACTTAAGTTGAACATTAACATGAGATGTATTTAAATACTACTGCAGTAACGGAATGTGGTGGCAAACCTAATGTTGAACATTAACATGAGATG # Questionable array : NO Score: 4.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:-1.39, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACAGTAACATAGGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 4 2252643-2252803 **** Predicted by CRISPRDetect 2.4 *** >NC_009697.1 Clostridium botulinum A str. ATCC 19397, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================ ================== 2252643 33 100.0 32 ................................. GGTTACTGGCTTTCTAATACATATAATTAAAT 2252708 33 97.0 30 ..G.............................. CTATATAAAAGCCATTGGGAATTTTGTTTA 2252771 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================ ================== 3 33 99.0 32 TACATTTAAATACATCTCATGTTAATGTTCAAC # Left flank : GCAAGTTTCTATTTTATCTATAAATTCTTTACTCAATCCCCTAATATTAAAAATATATAATCTATCCTTTTTATAAAATTTGTCTCTTTCTATAGGATAAAAACTATTAAATACGTAATTTTTGTACTGTTTCTTTGGATGTATTTCCTTTAAATCTTTATCCAAAAGCATACTTTTATTTATGTTTTTCCCTATTATATATCCACAATCTTCAAAATATATATCTTTTTTTAACATCACTGTTGCAATCAGTTCACAAAATTCCATTTATGCACCTCTTTATACAAATTTATCTATATTATACCATATAGCCTTTAGTTAATATAACCGATTATTCTACTTTTATTTTAAAAATATTATTATCTTTATTAATGATAAGTTACTTACCTATCATATTCTATTCTAAATCTTTGCATAAAATAAAAGCCTTAGATTTTTCTAGGACTTTTAATGATTCTTATTATTCAACATATGGCTAATACTTTAGAAAATGTATTAAA # Right flank : CCATAGTAAAATAGCCATTACTTATTTTTAAGAATAGCATATAGCCATTGATTTTACAAGGTTTTAAAGAAAATTTTCCAACCAATTATGATATTTTATAAATATATAAGGGAAACCTACCTTAAGCCTTACATTTCAAAAGCTAAGATAGGCTTATAAGTTAAAATTGGCTGGAAAAATATTAGCGTATTCTATATAATTATTTGTTATTTTTATCCTAAAATAAACGTAATATTCTAAATGGAAATATGATTTACCATTTAATCCCTCTGTTTTTAATATAGATAATTATGATATAATATCCAAGTTAGGATAGTAATTCCGTAGTGGATGGCTACGGGGGTTTTGAATATTTTATCCTCCTAGGATATTGGTGAGTCTTTCACTTATAAATAGGAGGTGGTATTGGATATGCTAGAATTAACCATAAAAAGTTTTGTTGTAATTTATATTGTTAAATTAATTTTAAAACATAATCTTTTTATTTCCAAACTAGTTAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TACATTTAAATACATCTCATGTTAATGTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 5 2253937-2253709 **** Predicted by CRISPRDetect 2.4 *** >NC_009697.1 Clostridium botulinum A str. ATCC 19397, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2253936 29 100.0 37 ............................. CATATTTTGTTCTACTTCTGAAACTGTTATAGGGTCG 2253870 29 100.0 38 ............................. CTTGTTATGTTTTCCTTTTTCATATAAAATCACCTCTA 2253803 29 100.0 37 ............................. TTCTTCCAAGAATTTATATTCATCTGAATACTCTATT 2253737 29 89.7 0 ...............T.A.......G... | ========== ====== ====== ====== ============================= ====================================== ================== 4 29 97.4 38 ATTGAACATTAACATGAGATGTATTTAAA # Left flank : AATCGGATTTGCATTTAAAGAAGTAAAAGCTGGAGAAGAAAAAAGATTTGAGATAGTAATAACCTATAATAAAAAAATGTATATTTTAGAACTTAAAATATGGAGAGGTGAAGAGTATCATAAAAAAGGCTTAATACAGCTAGCAGAATATTTAGAGCAATATAAATTAGATAAAGGGTACCTTTTAATATTTGATCTAAGAAAATCCACAAATTTAATAGGAGAAGTAGAAGAAAACTATATAGGTATAGAAAATCATAGTAAAAAAATAATACAGGTTTATTGTTAAAAAGTATATAGCAGTTAAAAATTATTTCTAAATATTTTTCCAAGTGAATTAAAAATCTAAACCTATCCTAGCCATTGGAATATAAGGCTTAGGATAGGTTTTTATTATGAAATTTTAAAAAACAAAATCGATTGGAAAACGTTCTATAAAACCTTGTAAAATCAGTGCTTATATGATATTCTTGAAATTAAGGAATGGCTATTTTACTGTG # Right flank : AAAACAAATAACGATGAAAGGATAACAAATAATAATTAAGGTAGCTTTTCATTGACAAGGTTTTTCAGCATTTTGAAATTGAAAAATCAATAGCAAATATTATACAGAGAGGGAATCAATTGTAAGCAGTAAAATCTAATTTTATAGTTAGTTTTTTATAGAATTAGATAGTTAAAAAATTAAACATATAAATATGTGTTTATTTTTTATATAAATTTGATATAATATAAATAAGAAAAGCTTAGTGTTGGAGCACTAAGCAATCCTTAGAATATTTATTTTGTTTTAGGGCTATTGGATGAATTTAATAATTAAATTTGAGAGATTGAAGCACTATTCTTGGTCGGATGGGTGCTTTTTCTCTTTGCCATTAAGTTCTATGTGAATACCAAGAAATTTAATCTTGATAACTAGTTTGGAAATAAAAAGATTATGTTTTAAAATTAATTTAACAATATAAATTACAACAAAACTTTTTATGGTTAATTCTAGCATATCCA # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAACATTAACATGAGATGTATTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //