Array 1 67738-65134 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000020.1 Anabaena cylindrica FACHB-243 contig20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 67737 37 100.0 37 ..................................... TTGAGATAGCTAATGGTGCTAGTGAATTAGCTATCAG 67663 37 100.0 36 ..................................... CTTTCTAAAATATTCACTTTTCCTTCTAGACTTCCA 67590 37 100.0 41 ..................................... AAATAAATTTTCTAATACTGATTTTGAAAAACAAAGGCTTT 67512 37 100.0 36 ..................................... CAGAAGCAGCCCCGTTGTACAAGCTGTAAACTTGAT 67439 37 100.0 39 ..................................... CCACGCCAAAAGATTGTAGAGGCAAATAAGCATTTTGAT 67363 37 100.0 37 ..................................... CATATTCTGCGCGTTCCTCTAGCTGTACTTCCTCAGG 67289 37 100.0 41 ..................................... ATCCCGGACTTGTCACCAATTCAAAAAGCTTTAAATGATAA 67211 37 100.0 37 ..................................... TCTTCGTCGTTCTGCTTACCGTGCAACTCATAGAAAA 67137 37 100.0 35 ..................................... TGTTAGGTGGTCTTATTCGTGCATTTGGATATCGA 67065 37 100.0 41 ..................................... TTGTAAACTCCCATAGAGATAGAATAAGTTTATCTAGATAG 66987 37 100.0 41 ..................................... AGTATCTGATACTACACATACAGCACTTGCAGCACGTATAG 66909 37 100.0 36 ..................................... CAGATTAGAGAATGGATTCAAAGCCATACTTGACAA 66836 37 100.0 34 ..................................... TCCCTAACGTATTCCCGTATCTTCTGAAGGACAG 66765 37 100.0 36 ..................................... ACAAATACATAACACCTACGCTTTATGATGTAATCT 66692 37 100.0 38 ..................................... ACTAGAGTCAGGAATCCCGTCATTATCGAAATCTTCTT 66617 37 100.0 33 ..................................... TTAATGTGTGGTTCTTGGGGCCATTCCTACCAC 66547 37 100.0 39 ..................................... AATAAAGGAATATCAATCATATATGATTTGATTTTCTAT 66471 37 100.0 34 ..................................... AATGATATCAGACTGATAAATAGCCAGAAGTCTG 66400 37 100.0 34 ..................................... CGATCGCCTCTGTGGATGATGGTGATTTAGCCAA 66329 37 100.0 33 ..................................... GAAAAATTTAGATAAGTTGTCAGACGAGGGACT 66259 37 100.0 34 ..................................... AATACAAACCCCAGAAAACCGCCAACTGTAATGA 66188 37 100.0 35 ..................................... GTTAGAACAACTCCAGCAGCAGTAACAGACCGAAC 66116 37 100.0 34 ..................................... GTTTCCTCAGCTTGACTGGTGGGGATAAGGTCAG 66045 37 100.0 36 ..................................... ACAATAATATATTAATGGTTCAGATTTTGAGAGATT 65972 37 100.0 35 ..................................... CGATTTTCCCCAAGCGATAATTGATTAATACCATA 65900 37 100.0 34 ..................................... ATCACGATTTACTGATACAAACGAACTACCTTTT 65829 37 100.0 35 ..................................... ATTGGAGACTTATCTAGTGCGTAAGAGTAGAGAGC 65757 37 100.0 39 ..................................... GTTGTCGTTATCGTCAATACGACAAGCTAATTTTAATGA 65681 37 100.0 36 ..................................... GACAATTAAGATTGCATTACCGTTTTCTTCTTTGAT 65608 37 100.0 34 ..................................... ATTTAATTCCAGTTCTCTCACAAACCATGTCTCA 65537 37 100.0 40 ..................................... AATCACGCTTTCAATAAAGCTATGATGCTGTCGGACAATG 65460 37 100.0 38 ..................................... TCGCTGCCTCTATCAACCGTTTTTCACTTGGAGTAGTG 65385 37 100.0 33 ..................................... TCTGCGTCCCACGTAATTCCAATTGCATACAAA 65315 37 100.0 35 ..................................... GGCAGCAGCGCAACGCTAGGGAGCTTCCTAGGCTC 65243 37 100.0 36 ..................................... AGAAGGTGATGCAATAGCTTTTCAAACTGATCAAGG 65170 37 94.6 0 .......................A....A........ | ========== ====== ====== ====== ===================================== ========================================= ================== 36 37 99.8 36 GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Left flank : ATGATTAGTTTAATACCGCAAAAAATAGGTATGGACAAATTTGAGATTACCTATGAAATTACGGTAGATGAGGTAATAGTTGCTAAGGCAATTACTAGGCACGTTTGTATTCATGCAAGTAGTAGAATTAAGCAAGAATTACCAAATGAGATGATTTCTTGGTTGGAAACGAACCGCAGAGACGCAGAGGGTGCAGAGAGAAGAAAGTCACGGGAAGAGATAATTTGACCATCTCCTTTTACTTCCTTGGCGCTTGCTGTTTTCTTCGCCTCATGCGCGGGCGGGTGGGTGTAAAAAATCTCAGTCAGCAAAAAATGGCTGAAATCTCATCTAGGCAAGCTTTTCCATACTTTTATTTGGTTCACGCATCCGCGCACCTTACACAGCAAGGGTTTCAGCTATTTTCACCCTTGACAGAATTTCTGAAATGGACTATGATAAGACCATTCGCGCAACCGCACCTTGAAAACTACATATATATAGGTTTTCAGCCTCCCACT # Right flank : GGAAATCTCAAGCATTTTAGCTTTAAAAGCTATACTACAAACTAGGTAAAGCCAAATTATTATTTGCCAGAAAATCCTCGGCAATTTTTTGGAGTTGTTGACAGTTAATTTTTCCTTGTCCATTTCTGGGTAAGTTTGGTAGGGAAATCCAATGTTTAGGAATTTTGAATTTACCAAGTTGATTTTTGAGTTGAGTTTGAATTTCTAAAATAGAGGTATTCGGGTTTTTAGGAATATAAATAGCTGTTAATACTTGTCCCCAATGTTTATCAGGTATACCAATTACACAAACATCAATAACCATATTGGTTTTTCTAATCGCTGATTCAATTTCTGCTGGGTAAATGTTTTCGCCACCTGTAATTATTTTATCGCTACTACGTCCGATAATATGTAAATAGCCTTGAGAATCTAAAAAACCAATATCATCTACTGCAAAATTATCTGTATTTTTCCAAAGTTCTGGATAGTAACCTAAAGCTAAAGATTTAGCTTGAATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 128576-128990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000022.1 Anabaena cylindrica FACHB-243 contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 128576 37 100.0 38 ..................................... CTTTGTACGAGCAGACAACATTTTAGTTTTCCTCCAAA 128651 37 100.0 36 ..................................... TCACCCCGCTGCATCCATTCCTCTACTTTTTCAAAA 128724 37 100.0 38 ..................................... TTTTATGATCGAAGAAATCAAGGATAGCTGTACCTCAA 128799 37 100.0 39 ..................................... TCCACAATCCGCGTTTGCGATCGCAATTAGCACCCCCCG 128875 37 100.0 42 ..................................... AAGCGAGAGAAAGAAATACCAGAAACAGAATATATCGTTGAG 128954 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 100.0 39 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : CTGCGCTAATTTAGTTTACTAATCCGAACCTTGACAATATAATATGGATACAACAGCGCCGTAGTTCATGCTCCTTGGAGTCTCTGTACTATGAAAAATCTGGCTTAGTTTGGCAGTTGGAAGACTGTCATGCTTTCTGAGCCTGGTAGCTGCCCGCTTCTGATGCTGCTGTCGCAAGACAGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTTATAACGATGTGGATTTCCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCCCAAATCTTTTTTTTGGCGAACCATAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAACCTTGAATCCCTTGTCCAGTATTTATTTGACTCATTTGAAGAGTGATGAATGTCCTCTATTGAGAGCAAAAAAACAGATTTTTTAACAGGTTTGCCAAAATCGCATCTGGAAACCTGTATTGGCAAGGGTCTAGACGGGCGCG # Right flank : GATAACTAGAATTTACTTGCGTTAACCATTAAAATAAAATGGTTGCAAAATAGAAATGATCATGGGAGGGTTGAAAGGAGTGCTGCGATCGAACACATATCAATAATCCAATAATGCCCTTGCAGCAATAATTTATTGTATAGTAAATGTTAAGTTCATGCGACATTAATTTGCGAAAACTTAGAATAATTAAATTGACTCTGAAAAACAACCACCACGACATTAATTTGCGAATAACGACACTAAATTGCGAAAAGCGACATTTAATTTGCGAATGTACATATATAATGGAGAATAGGAGACTCGAACCCCTGACCTCTGCGGTGCGATCGCAGCACTCTACCAACTGAGCTAATTCCCCTTGCTAGTCTCAAGTTACTAACTCAGACAGCCGTACTATATGTTAACACTCAGGCAGGGTAGTTTTCACCTCTTTTTGCAAAAAAACTTCCTGTACCCGGTCTAATTCCAAATCAGTCAGATAATCTACTGTCCAGTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 40634-40091 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000011.1 Anabaena cylindrica FACHB-243 contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 40633 36 100.0 37 .................................... GGGGGTTTGTTTATCAATTTCCGTAAAAGCGGAAGGT 40560 36 100.0 35 .................................... TTTTGATACGGGTTCGTTGTTATCACTAGGATTGT 40489 36 100.0 38 .................................... ACCATCGTTGGTGGGTGGTAAGTTCCAGCCCGAAAAAT 40415 36 100.0 32 .................................... GTAAGTTCAATTAGGTGATATTCAATTGAGTC 40347 36 100.0 34 .................................... CATAATTATTTATCACCAATACTCCAGAAAAGCC 40277 36 100.0 43 .................................... TTTCTGTTTCCTTATTAATTTTTTTGAGGCTGGATTTTGTAAT 40198 36 100.0 36 .................................... TTAGTAGATAGATATTGAAGGAATTGTTGCAAGAAC 40126 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 100.0 37 CTTTACAAAACCACTTCCCCGCAAGGGGATGGAAAC # Left flank : TGTATCAAGGCTTGGGCATCCATCACTGGTTTTTCTTTCCTAGCCCCTGGTGATAGGTGTTCAGTATTGGAGAATAAACTCAGTTGTTCCATCTTGAAAGCAAATAACCACCAGTTAATTATCGCAGATTTTTCTTGAGGGAAATTGAAAAGGCTGGTAGGGTAGGCGATCGCTCAAAGTAAACTATCTGAACTTACTTAGTATTTCTACACAGAATTTAATCATTTTAGCGTTACGTGAGTTTTCCCCCAATAAAAAAGCTAACCACTTGACAAATCCCTGTAAATAATATACTTTCGACAATTATGTAACAAGTTTTCGACACACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTAACCTGTGTCGATGCCTTACTGTGTAAGGATTTCAGGCAACAAATTTCATGAATTTGAGAAATTTTTTTCTCACTTTTCAGAGGTGTGTCGATTTGGGTATCTGAAACCTTTGCCTAGTAAGCTTTCCAGAAGTGAACT # Right flank : GCTACAAAAATTGCCAAATCAACCAAGAATAATCTACTTATTGCTTGCAGCACTGCCGAAGGTGCGGATACCAGAAGCGATCGCTCCTCCCATAAACCACGACGATAGTTTGATAAGCAGTAGCGATATTTAATTATCAGCCTGTCGGTATTGTCGGTTTTCAGTTCTTAGGGGAAAATAAAGCGATGGGCTTCGCCCCGCCGTAGGCGATCGCTTTGCGGCACTTCGTGAACGCTCCTCAAATCAGAATATGCTTATTTTTTAGAAGTGTTGGGCATCGTTTTTAAAACTATTGATTCCCCCGTCGTAAAATTTTTGAACAGCTTTTTCTACTTGTTTATCTGTTAAATCGTCAACATCTTCATCTTCTATATCACCCCAGCCACAATCTTTTATCCAGTCTCTAGCTAATTTTAATTCTTCTTGAGATAGTTCTAATTCTGTATTCTTCATATTCTTAGGGGATAATTTTTAAGCGATGGGCTTCGCCCCGCCGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAAACCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 20531-17617 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000029.1 Anabaena cylindrica FACHB-243 contig29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 20530 23 100.0 49 ....................... ACCTCTTCTGGCTTTAAAACGTTACTATTTTCTAGGTTTCGATATAACT 20458 23 100.0 50 ....................... ATTAACCTTAAAATCTGTTGCATCTGTCCAGTGAATGTTTCGATATAACT 20385 23 100.0 54 ....................... TCATCTATAGACACAAAATTCGAGGCTATGTAAGACTCTAGTTTCGATATAACT 20308 23 100.0 51 ....................... AAATAGCCGGATTCGGAAAAGTTTGGCACAACTTCAAGTTTCGATATAACT 20234 23 100.0 50 ....................... GTGATAGGCTTGGTTGTTCCAGGGAAAGGGAACACTGTTTCGATATAACT 20161 23 100.0 50 ....................... TCAACGGTATATACCCAGTCTCGTTGCACCTTAAAAGTTTCGATATAACT 20088 23 100.0 50 ....................... GGCTTTTATATTGCCTAAGATGTTTTTGTAAGCTACGTTTCGATATAACT 20015 23 100.0 56 ....................... ATTAATAAGTTTTTCTTTAGCGATCGCTTGACCGGTTCGAGAGTTTCGATATAACT 19936 23 100.0 49 ....................... TGACAATGAAACGGAACAAAAAACCTTTGTTGAAAGTTTCGATATAACT 19864 23 100.0 50 ....................... TAGATGTTATAAATTCTATTTCTAATTTAAGAAAAAGTTTCGATATAACT 19791 23 100.0 50 ....................... ATGATTTTATGAATTTCTTTTAAGATTCCCTGTAAAGTTTCGATATAACT 19718 23 100.0 51 ....................... ATCCAAAAGTCTGGAGACTCAATTATGTCGTCTACAGGTTTCGATATAACT 19644 23 100.0 51 ....................... TTCATCTCTATCCCAATACCAGACAGTTGCAACAATAGTTTCGATATAACT 19570 23 100.0 50 ....................... ATAGTTCAGTTTTTTGGCAGCTTCTTTTAATGGAATGTTTCGATATAACT 19497 23 100.0 51 ....................... ACTGCTAGTACCTATCTAGCATAACCTGTAACAGGTTGTTTCGATATAACT 19423 23 100.0 49 ....................... ATAGCATCGGAGTTGAATAATATGAATTTTGCCTTGTTTCGATATAACT 19351 23 100.0 51 ....................... AAGATTAAACTCCCCTTTGCTATCAAACCTTATCTGGGTTTCGATATAACT 19277 23 100.0 51 ....................... ACCAGTCGATGTACCAGACTTTTTTACAGACTAGATAGTTTCGATATAACT 19203 23 100.0 48 ....................... CAGTCAAGATTTGATAAGACTCGATTGGAGATAGGTTTCGATATAACT 19132 23 100.0 57 ....................... TTAGCATTGATCCAAAAACCTAACCCTAGATAAGTTAGCCCCCGTTTCGATATAACT 19052 23 100.0 53 ....................... ATCCCTACACAGGTTATCAGCAATTATGATTTTCATCAGGTTTCGATATAACT 18976 23 100.0 56 ....................... GTTTTAAAGTTGAAGATACCCTTAATTTAATTGAGGTTGATGGTTTCGATATAACT 18897 23 100.0 52 ....................... ATTTATCAATCAAAACTGAACCTCGACAATTTAATGAAGTTTCGATATAACT 18822 23 100.0 51 ....................... CTGCCCCTTGTCCGATTCCTGGCAGCTATCAAATTGAGTTTCGATATAACT 18748 23 100.0 51 ....................... TCTCCTAGATATAAGTACAGATTCTGGTAGTTTAGTTGTTTCGATATAACT 18674 23 100.0 53 ....................... AAAGGAGTATCGTCTACATTAAAGCATTAAAGTTATATCGTTTCGATATAACT 18598 23 100.0 51 ....................... TTAAGAGCAGTTTGTGTGGTAGCCATGATTTTTTTTAGTTTCGATATAACT 18524 23 100.0 49 ....................... CCTTTAATCGCGGCCGGAGTTGTAAAAGCTCAGAAGTTTCGATATAACT 18452 23 100.0 48 ....................... TTGCACCCCACTTACCAGGCACTAAGGTCAAATAGTTTCGATATAACT 18381 23 100.0 47 ....................... TTTATTTGTGGAGTTTAGGAATATCAGTTATTGGTTTCGATATAACT 18311 23 100.0 48 ....................... TTCATATTTCTTGCCTTCGCGATCGCAATAATTTGTTTCGATATAACT 18240 23 100.0 55 ....................... ACATCTGAAGGAATTTCTAGCTTCTCAGAAGCTACGCCCAAGTTTCGATATAACT 18162 23 100.0 56 ....................... CAACAAAACAAAAGGTATCTATATTGTAGGATGTCTTGCCAAGTTTCGATATAACT 18083 23 100.0 55 ....................... ATTATTTGTGATGAAGCCCACGAGACTTGCTGGATATCAGTGTTTCGATATAACT 18005 23 100.0 53 ....................... GTTTCTTGTGAACAAAAATATCCCACGATTCACTATCGAGTTTCGATATAACT 17929 23 100.0 48 ....................... CATTTCCAACGATAAATAAATGGATCTAAATTATGTTTCGATATAACT 17858 23 100.0 48 ....................... ATGGAAAAACAAAGTAAGGAATAGTAGGAGTAAGGTTTCGATATAACT 17787 23 100.0 53 ....................... TTTTCCAGATAATCTCTTTACGTTCTAGTTCTTGTCTATGTTTCGATATAACT 17711 23 100.0 49 ....................... TCACTTACCACACATACCGCACTCGCAGCGCGTATGTTTCGATATAACT 17639 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 40 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ACAAAAGGCAGAATTATTAAAGGTTATGGCAAATCGTTCCCCAAAAGATGCTTATTACAGCCTTCAATATCGACATGGGGATAATAACGTAACTATGCGCTTACGAGCTTGGCGACCAAAAGTAGAAATTTTGTTACCTTATGATTTAAGACAGAAAGTTAAAGCCGATATTATCAAGGAAATAGGGCTTTATCAGATATAATTGACTAAATTGGTCAATTTAACACTTAAATATTTGTAATACAGTAAATCTTGACAAGTAACTTGCTAAATTTTACACTTAATATAAGGATAAATTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATCCGCCAAATCGCCAGAACCTTGATAATTGAATACTTTCAGCGTTTCATTAGTTTCAGTAGGCAGTTAACCCAAAGCCGGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCCCCCCTACAGTCTGCTCCTAGACTGTGTTTCAGATGGCGGGGTTTCGATATAACT # Right flank : AGAGTAAAATACTGAGCATAAGATCATGTAGCATCAAAAAAAAATGCCAAGAGTAGCTACATCTAGCAAACGCAAAACCCCATCACAAAACACCTCTCTAGTATGGGCTGATGATACTGAATTAGTTGGTTTAGTCTTTGACCTAGAAGTAACCAATTCCACATCGCTATACTCGCAATATACCATTGGACTTCATGCTTGGTTTCTAGATCAAGTTCGCCAAATTAACCCAACCCTTTCAGCATATCTGCATGATGGCGAATCAGAAAAACCCTTTAACATTTCTGCCCTCGAAGGTCAATTAGTTCCCACTGGTAAACAACTGCAACTGCAAGCAAATCACATTTATCGTTGGCATCTTAACGCCATTTCTCAACCAGTAGTTCAGTTCTTGAGTCAGTGGTTAAACCAACCTCCAACTATTCTGACATTAAGAGATGCTTCCTTACAAATAAAACAGATAAGTATTGTCCATCCACCAAATACTTATAGCCTACTAC # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.32, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 43720-47213 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000029.1 Anabaena cylindrica FACHB-243 contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ========================================================= ================== 43720 23 100.0 51 ....................... AATCAAATTCAGCTACGTACTTCGCGAAGCTTTCTAAGTTTCGATATAACT 43794 23 100.0 48 ....................... TCTTATCGTCTTGTTCTGCGGTTAGACCGATGCTGTTTCGATATAACT 43865 23 100.0 50 ....................... GCTACAATCACACAGAAAAAATTTTTATTGACCTAAGTTTCGATATAACT 43938 23 100.0 51 ....................... ATTAGATCAGAATATTCATCTGTGGCAGATGAGCCAAGTTTCGATATAACT 44012 23 100.0 53 ....................... GTTTCACCACTGCTACCAGACCAACTACCTTTTTTCTTGGTTTCGATATAACT 44088 23 100.0 53 ....................... AAGCGTAAATATTTCCCGTATGAATTGGGGTAGGGTTTCGTTTCGATATAACT 44164 23 100.0 50 ....................... AAGACAATGCAGGAATTAAAAGGATACACACCAACAGTTTCGATATAACT 44237 23 100.0 52 ....................... GCTTTGTCTATAGTTTATAAGGGTTAGAGTGATCCAAAGTTTCGATATAACT 44312 23 100.0 50 ....................... AATTCTTCTTGTTTCTGGATGTTATAGAATTTAGATGTTTCGATATAACT 44385 23 100.0 49 ....................... CTCTTTTTATCAATCTTCCTCTGTAATCTTTTGATGTTTCGATATAACT 44457 23 100.0 49 ....................... GTTCTGGAGGAGGAGGATCAGGGGGTGATGCGAGTGTTTCGATATAACT 44529 23 100.0 53 ....................... TCAACGCATATGGCGCGCAAGGTACAAGTTTCTGGACGAGTTTCGATATAACT 44605 23 100.0 52 ....................... TTCAGTTGGAATACAACAATAGGCGAAGTCCAGCTTTAGTTTCGATATAACT 44680 23 100.0 54 ....................... TATCTTACTATAGATACGACTATAGATAGTGATATAGGGGGTTTCGATATAACT 44757 23 100.0 49 ....................... TCAATCAAGTACAATGGTGGCAATATCTCTTAAATGTTTCGATATAACT 44829 23 100.0 50 ....................... ACCCTCGCTGTCTGGCAATTCTACTAGATGAGCTATGTTTCGATATAACT 44902 23 100.0 49 ....................... TAGTCAGGTAGCTGCTGATTACCGTTTTGTGCGTAGTTTCGATATAACT 44974 23 100.0 48 ....................... ATCCTACTAACCGATGGCGAAGATCTCAACATAAGTTTCGATATAACT 45045 23 100.0 56 ....................... GTTAAATCTCTGATTCCAAGCTCTCTGTTATTCGCTGCTATAGTTTCGATATAACT 45124 23 100.0 52 ....................... TAATATCTGGGGGATTGAGTGCGATCGCCAAATAGCAGGTTTCGATATAACT 45199 23 100.0 49 ....................... AGGAATTTAACTCATTTTGTAGGTTAGTTTCTTCAGTTTCGATATAACT 45271 23 100.0 57 ....................... TCTTCCAAAAATCAAAAGATATTCTTGCTGACAAGCAATCAATGTTTCGATATAACT 45351 23 100.0 52 ....................... TACACTAAAAAAATAATCCCCCAAACCGTCGTAACCGGGTTTCGATATAACT 45426 23 100.0 52 ....................... GAGAAAATGACAGAAGAACAAGCAAAAGAACTTTTAATGTTTCGATATAACT 45501 23 100.0 50 ....................... TTGGCGTAAATGTAGCCTATTAAATCCCCCTCAAGCGTTTCGATATAACT 45574 23 100.0 52 ....................... AACAATGGTTCGGGTTTCTCTATGTCTTGACCCTTGCCGTTTCGATATAACT 45649 23 100.0 51 ....................... ATATCGTTATATAGTAATACGCGAGGATAGCGATATAGTTTCGATATAACT 45723 23 100.0 52 ....................... GCCAATTTCAGAAAGATTGCCAACAAATGATTTAAGAAGTTTCGATATAACT 45798 23 100.0 49 ....................... TTAAAATCAGCCATGATCTTTAATAATTAAATTTAGTTTCGATATAACT 45870 23 100.0 50 ....................... ATTTCTTCCAGGGTTGGTTTATGGTGGAAAACCCTGGTTTCGATATAACT 45943 23 100.0 50 ....................... CAGAGAATCCAAACATCTTTAGAATCACCGCCAACCGTTTCGATATAACT 46016 23 100.0 51 ....................... AAAAGCTTGTTGTTTGTCAAGATGAATGTCGCAGAAAGTTTCGATATAACT 46090 23 100.0 47 ....................... TAAATGTACTATGCTGCTCTGGCATTTAAAATAGTTTCGATATAACT 46160 23 100.0 48 ....................... TTAAGAATATGACTAATTATTGCAATACAGGTGAGTTTCGATATAACT 46231 23 100.0 51 ....................... CAACTATCGAAGCGGTTTCTTTCTGCTAAGTCCAATGGTTTCGATATAACT 46305 23 100.0 51 ....................... CAAACAGCCATAGACAACACTATTGCCACCGTTGGCGGTTTCGATATAACT 46379 23 100.0 52 ....................... GAGATACAAAGCAATCTGAGAAGTCTTTGCCACCTATAGTTTCGATATAACT 46454 23 100.0 50 ....................... TAATAAGCTTCCTTTATCGATCTAAAAGCTTCAGTAGTTTCGATATAACT 46527 23 100.0 49 ....................... TAACATAAACCCATAACCCTTGTCAAGCATGACTTGTTTCGATATAACT 46599 23 100.0 50 ....................... TTCTTGCCATATCTGCAATAGCATTAGCAATCAAGAGTTTCGATATAACT 46672 23 100.0 53 ....................... ACAATACTCGCAGACTTAGAAGATTTTTCAAGCCTAGCGGTTTCGATATAACT 46748 23 100.0 51 ....................... AAAAGTTAGTTGCTAAAGAAGTTGGTGCGGCTGTCGGGTTTCGATATAACT 46822 23 100.0 55 ....................... ATGCTATCCTATTAATTGCCTTATCAAAATAGTAGTGATTGGTTTCGATATAACT 46900 23 100.0 49 ....................... AATGTAAAATAGACAACATGAATCCATCATTGTAGGTTTCGATATAACT 46972 23 100.0 49 ....................... ATTATCTATCTAATTGATTATGTTGTATGTAACTAGTTTCGATATAACT 47044 23 100.0 52 ....................... TCAATCAAGTCCCAACATAAAGGCACTAGTTATCAAAAGTTTCGATATAACT 47119 23 100.0 49 ....................... AATCCAATTAAGAACAGAAATAAATAACTCATCTTGTTTCGATATAACT 47191 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ========================================================= ================== 48 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATCTGATTATTTACGACTTACCTGATAATAAAGCTGCAAATAAGCGGCGTACTCGCTTACATAAAATGCTGAGTGGTTATGGTAAGTGGACTCAATATAGTGTGTTTGAATGTTTCTTGAGTGCGGTACAGTTTGCTACACTACAAACAAAGATAGAAAAACTGATTAAGCCTGATGAAGATTCTATTAGGATGTATGTACTAGATGCTGGTAGTGTGAAAAGAACTATCACCTATGGTTCGGAAGTACCTAGACAAGAACAAGCAATAATTATATGATGAATACATCAGCTAAATTTTGGCAGACCTAGAGCGGGGTCAAAAACCCTGGAGATCCGCCAAATCGCCAGAACCTTGATAATTGAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCAAAGCCGGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCCCCCCTACAGTCTGCTCCTAGACTGTGTTTCAGATGGCGGGGTTTCGATATAACT # Right flank : CGGCTTTCACTATTGCCAAAGGAGTTTGCCATGTTTAGCAAAAGGTCTTACCAGAAGCAGTGATGACCAGTGTGAATCACAATTACCTAAATCAAAATTACATCAACTGACATTTTTGTACAATGGTCAATCTTTCCGGGCTACCTCTGCTACTGCTAAGTTAATCAAACGATTAGAACCATAGTTGCAGCACAGTATTTAAAATTAGCGATAGCTTCGCTCTCTTCTCTTCGTTCGCGGAGCGTCTGTCTACGACACGCGCCGCGACCGAGTCCCTTAAGGGATACGCCGTAGGCATCGCCCCAACATCAAAATCATCAAAAAATTGAGCATTACTTTACTGATACTGGAACTCGATTTTCCAAACGATTTTTCAGTTCTAGATTCAGGTTTTCACCACTGCGATGAGCTTCCCAGTTTCCAGAGCCAAAGTTACCTAAATCCCATATTCCCTGGATAAAATCGTCATCTCCTGAGATAGTACCCTGATAATTTACTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.29, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3117-3368 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000044.1 Anabaena cylindrica FACHB-243 contig44, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 3117 36 100.0 38 .................................... GTCCATTCTTCTTCAGTTTCTTTAGCAGAATCAACTAT 3191 36 100.0 31 .................................... ATACAGTGGTATTCAGGTTACCACTGACCTG 3258 36 100.0 39 .................................... TTTCATTAACCCAACCATTTCACCACATTGTTGTTCTGA 3333 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 4 36 100.0 36 CTTTACAAACCCACTTCCCCGCAAGGGGATGGAAAC # Left flank : AAAAGCTGCGGGGTTATCCACAGATTTATTTTGCTCAAGGTAATTATGCCTGGGGTATTTTGGAAGCCTTGGATTATTACGACTTTTTTGGTAATCTGTCTCAAAAACAGCCAGAAATGGTGACGGTTTAGGTTGCGATCGCACTAAGTGATTTGTGAATAATCAGATCTCCGACTTCTTTTTTTAAACTTGTCAAGAAATTATGAATTGATGCCAGAAGTCGGGGATTTTAGATTTTGCAAGCGGGAACATTTTTAACATTTTGGGATTGACATTTTCAGTAAAATTATCTATTTTAATGTGATATGTTCAAATTTATCGACGCACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTAAGGTGTGTCGATGGCTTACACCACAAGGTTTTCAGGCTACAATTTCGACCATTTCTGAAACTTTTTTTTCCATTTTCAAGAGGTGTGTCGATTAGGGTATCTCAAACCCTTGCTATGTAAGGTTTCCAGAAGTGAACT # Right flank : CACATCCAATACCCTAATTGCTGATCAAATCGCTTTTTTCATCCTGTTAATCCTTTAATCCTGGACATCCTGATTCAGACAGTTTCTCCAAAACTCCCCAAAAATGTCATTATAGTAAAGGTAAAAACGCACTGGAGACAAAGCCACGGTTTACGCACGCCCTTTAGCCCGGTTAATTGAGCAACTGCAACGCCTTCCCGGAGTTGGCCCCAAATCTGCCCAGCGTCTAGCGTTGCATATTTTGAAACGTCCAGAGACAGAAGTAGAAGCCTTAGCACAGGCCATGATTGATGCAAAAAAACAAATAGGTTTGTGTCAAGTCTGCTATCACCTCTCATCTGAACCTGTATGTGAAATTTGTCGCAACCCCAACCGAGATAATAAAATTATCTGTGTAGTTGCAGATTCCCGTGATGTAATTGCACTAGAAAAAACCCGCGAATATAAAGGCAAGTATCACGTTTTAGGTGGGGTAATTTCCCCAATGGACGGTATTGGCC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 5243-7608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000013.1 Anabaena cylindrica FACHB-243 contig13, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================== ================== 5243 36 100.0 43 .................................... CAGATGGATCGAGGATAACTAGGGGGAGTAGGGAAGAGGGCTA 5322 36 100.0 39 .................................... GTCGTAATCAATTGATTCTTCAGCAGCCATTTTTGCAGA 5397 36 100.0 49 .................................... ACTATTTACGGCAGCTAGATGAGGACTTAGCTGATTCTACTGATCACAA 5482 36 100.0 36 .................................... TATTCGTAAATGTTGAGCATCGAACTTACCGCTTTC 5554 36 100.0 41 .................................... AAACAACTATTAAATGAATTACCAGATAAAGCAGTTTACAC 5631 36 100.0 41 .................................... CCATAGATTGAGCAGGTAAACTAACTACCAGTACATCATCA 5708 36 100.0 34 .................................... TTGATTTTTCGTTAGTCATAACCGCGTCCTTAAC 5778 36 100.0 36 .................................... TATCTCATCATCGTCTATACCTAAAAAGCAACAATC 5850 36 100.0 38 .................................... CTCCCACATCAAGTCCTCAGATAGTACCGTGATAAAGT 5924 36 100.0 36 .................................... CGAGGCAGTAGCTACCGAGAATGGTGAGACACTCCA 5996 36 100.0 35 .................................... TGGTTTAATCCGTCCCAAGAAGATGCCTTAATATG 6067 36 100.0 42 .................................... TGTAGAATGCTCAGGTCTAACTTGATTGGTCTTTGGTGGTAG 6145 36 100.0 39 .................................... CACCTTGAAAATAAGAGACTTTACCTGACTCTGCGTAGA 6220 36 100.0 35 .................................... CATTTCACGCTGTTCAACTTGTCTGATAATGTCAG 6291 36 100.0 39 .................................... ATCAGTAGCAGAAACTATTACAGTTATTGTGCTAAAAGG 6366 36 100.0 41 .................................... TTTGATGAATGGAGCTTATAACCCTTGTAGAGTGTCATCTT 6443 36 100.0 38 .................................... TTAGAATAAGCTTCACTTTGTAGTTTTAGAATACTTCC 6517 36 100.0 37 .................................... CAGATGAGAACGTACACAGTTGGATTAAACCACTATT 6590 36 100.0 38 .................................... TTTCGATTTTCAAAAGTTACATGATGTCCTGCTTGATG 6664 36 100.0 41 .................................... TTTGCCAAATTTAGTTTGTTCAAGTAATGGTACATCACCTA 6741 36 100.0 39 .................................... CGTAAAATGACTCTTTAGTAAGAATTAAGCTAGTATTAA 6816 36 100.0 36 .................................... TTTGTTGACAAAAAGACGTATTGAAGACTCGGATAA 6888 36 100.0 39 .................................... TCTAATTTGTAGAGTAGCTTGTAAGCTACAACAAACAGA 6963 36 100.0 39 .................................... TGGTTATTTCAAATATGATGATGTAGATGATGATTGTTT 7038 36 100.0 50 .................................... TAGTAATTGGATCTTCAACACTGATTTGACCAGTTTGAACTACTTGCCAA 7124 36 100.0 46 .................................... CTAGTTGCTATCTCTCTCCACCTACGAGCCAGCATGGATGACGTGG 7206 36 100.0 39 .................................... CATCATGTGATTTACTACCAAAGTTTACAAGTTCATCTA 7281 36 100.0 41 .................................... TATTCTTCCGTGTTATCTTCACATAACCCGATGTCAATCAG 7358 36 100.0 35 .................................... AGATAGCTCTTTATCTTTAGCTGTAAAGGTTTCTA 7429 36 100.0 36 .................................... ACTCTACTTGTGTGAAAGGTAGATTGTGACTATATT 7501 36 100.0 36 .................................... TTTAATTGAAGTTGCGACAGATTGCACTGCTTTAGA 7573 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================== ================== 32 36 100.0 39 ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Left flank : TTATAAACCGTATCGAATTGACTAAAATTATGTTATGTTTTTGTATGTGATTGCTTATGATATTCCCTGTAATAAACGGCGCAAAAAAGTGGCTGATTTATTAGAAGGTTATGGACAGCGTGTGCAGTATTCTGTGTTTGAATGTCAGTTAAATACCGAAAAATATCAGAATTTACGCCGTCAATTGAGAAAAAAGCTGAAGTTAGAAGAGGATAATGTCAGGTTTTATCCTTTGTCTCGACATACTTTGTCTCAAGTGGAAACTTGGGGCGTGGGAATACCTGTAATTGAACCACCTAGTTCAATTATTATCTAGTTGTTTCTGAAGTTTGGATAAAATGGCTGGAGTGTTTATTTTATGGTTGTGAACTTCGGTTACTTATTGGGTAAGGGTTATGTAGTTTTTAATGGTGGTTTTGTGATCTGTTTAGCAGCGGTTTTTGCTGACCTTCGGAAAGTGGGTCTAGACTCCTTAATGAGTAAGGGTTTAAAATAGAGGT # Right flank : CGATATTAACGGCTTTAAGAGCAATAGCGATCGCTTCCCCAACTAAACAGTATTTATTTTTACATTCTTAAAGCTTGTACTAGCAACGCCCAATACAATACATTTGAACTACAAAAGTTTAGTTAGAATAAAAACTATAGTTTAATACGTGCATAAATAAGAACTTATGTCAAATACAAAAAAATATTTGTAATAAAATCCTTATGGATAGGAAAAGCTTACAAAGAAAGCATTATAGGAATTATTGATAGAGATGTTGCAATATTTTATATTCCTAGACAAATACTTAAATTCGCTAATACAATGTAAATATCAGCTACACAAGGAAAATACTGGTGTCAGAAGAATATTGGCGGGCTAAAATCTGGGGGTTACTACATGACCCTGTATTAAAAGCATTACATGACAACACAGGACGGGGTAAAAATAGCTTCTACGAACAACTAGAAGTAATGAAACCTTGGGTAGAAATTGGCAAAACCCCCGATGATTCTGGTGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCCACTCGCTGGGGATATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 118254-119098 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000058.1 Anabaena cylindrica FACHB-243 contig58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 118254 37 100.0 35 ..................................... TTAAAACTAGGTATCAAGGGTGGGTAGAAGCTAAA 118326 37 100.0 37 ..................................... CAAGCTTTGACAAGAATGTTTTTGGAAGGAGAGAAGC 118400 37 100.0 47 ..................................... CCAGCAGCACAGGTGTGTAACGTCATGCAAGAATTGGTTGCTACAAT 118484 37 100.0 35 ..................................... GTAAATTCTTGATTCCAAGCTAATCTAATTCCCAG 118556 37 100.0 37 ..................................... TAACATTGAATTGTTAGACATATCAGATCGTATTCAC 118630 37 100.0 36 ..................................... AAACTGCTAGAACACGCTGCATTTTACAAAGCTCAA 118703 37 100.0 34 ..................................... CGTTAGCTTCTGGGTCAAAAGTTAAGTCTTTAAC 118774 37 100.0 35 ..................................... TGTGTAAGAGTTTCAGGCAATTGTACGCATGGGAA 118846 37 100.0 35 ..................................... AGTGCTATTTGGGATGCAGCAAAACCAAGACTTGA 118918 37 100.0 37 ..................................... CGGCTGTTTATGTTAATAAAAAGGCTTTCTTGTTTCT 118992 37 100.0 33 ..................................... CAACTTTTAAAGCAAAATCAAAGTAGTACTTTG 119062 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 12 37 100.0 37 CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTGAAAC # Left flank : CCAGCAAGCAGTTGAAAAAAGAAGGTGAATGCGCCGATAAAACCAGAAGCACCAACACCTATATAGATAAATTGCCGCAAACCACGATAAGGGGCTGCTATTTCAGCTTTCAGGTGGGCATATTGTTTAGAGTTAAGACGATTTTGGGAATTTGGGTCTATCATAGGTAAATAATGCTATGATATCAAACTGTGTATGCCGATGTGGCTCAGGGGTAGAGCAACTGATTCGTAATCAGTAGGTCGTGGGTTCAAATCCCATCATCGGCTTTGGTGTACATTCGCACACTATATGTCTGTACATTAACAATTTATTTGTCACTGTTAACAAATTAATGTCATTTTTAACTAATTCGTGTCACTGTTAACAAATTAATTGTCCCTAAATGTCACAAGCAACACTGTATTTATATAGTGTTTTCAAGTGTTTTCAGAGTTAAACCCACGACCTACTGATCTTTCAACCCACCTAGATATTTTTTATTCTACTTGCATTAATGT # Right flank : CTCCGCCCGACCAAACCCTTATTTAGTGACACTTCCAAAAGCAATTTTGGCGGATGTCCTAAATTTGCTCTTAATTTCCCTTTAAAGGGAACATTTTCAAAGCATCTCAACATCTGAAAAACAGACTAGACAAGGGATTTGGACTTTTGGCAGAACCCCAGGGAAATTGACCTCGCTTATGGTTCGCCAAAAATAAATAATTAAGGTGGATTCCTCCTTGCTCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTTTACAAGAAACAGCAGCATCAAGGTGGGCAGCTACCAGGGTCAGAAAGCAAGACTGTCTCACAACAGTCAAACTAACCCACATTTATCTCAGTTCAGAGGTTGATCAACAACATGAACTGCGGCGCTATTGTTAATTACTATTCTATTATCAAGGTTCAGTGTTTTGTCAATCAGGCTTTTCGAGATTGATAGGCGTTTATGGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCCCACTCCGGGAGGGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 176338-182546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000040.1 Anabaena cylindrica FACHB-243 contig40, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================ ================== 176338 23 100.0 48 ....................... CGGATTCTACACTTTGAGAAAGGATGTTAGCTAAGTTTCCAAATAAAT 176409 23 100.0 54 ....................... AACCCTACTAATTTCTTGGGGATGAAATTTAACTTGCCGTGTTTCCAAATAAAT 176486 23 100.0 51 ....................... CCTTCCTGAATCTTGGATTGATTCTCCTTTCTTCCTGGTTTCCAAATAAAT 176560 23 100.0 54 ....................... AGCATCTACTAAGCTGCTAATAGATTGATTTTGTAAAGTTGTTTCCAAATAAAT 176637 23 100.0 55 ....................... TATAGAAAATAAATCTATATCGGCTTGGGTAAGCAATCCCGGTTTCCAAATAAAT 176715 23 100.0 50 ....................... AAAGTAGAAAGTTTGTTGTCAAAATGCCCCTGAGATGTTTCCAAATAAAT 176788 23 100.0 51 ....................... CTGTTATATCAGCGGTTTTCCAACTGTTTTTAATAAAGTTTCCAAATAAAT 176862 23 100.0 54 ....................... TCAACTGAGCAATAAAGCTCTTTGCTTCTTTTTCTCTTAAGTTTCCAAATAAAT 176939 23 100.0 49 ....................... TGGCGATCGCTGCTGCAATCTGTTTGTGGTTTTCCGTTTCCAAATAAAT 177011 23 100.0 52 ....................... TATCTGACTGGGCTTCTGATAACTGGTTACAACCCCTGGTTTCCAAATAAAT 177086 23 100.0 50 ....................... AAGGTGGAAATCAACGGGTAAATCTTCATGCACCTGGTTTCCAAATAAAT 177159 23 100.0 52 ....................... ATTTCTTTTACAGTTTCGACGGTAACTGTACCTTTAGGGTTTCCAAATAAAT 177234 23 100.0 54 ....................... CTCCATAATCCCAGCAATCATTACTAAGGATTTACCCAAAGTTTCCAAATAAAT 177311 23 100.0 53 ....................... CCCCTAAAGAGACTATCTAAAACATCACCGCTATTTTATGTTTCCAAATAAAT 177387 23 100.0 53 ....................... AGTTTTAAGAAATTATCCTCAGTCGGATCTACATCACCCGTTTCCAAATAAAT 177463 23 100.0 52 ....................... TTTGAAAACGGACATCCGAGAATTTTAAAACTCATCCAGTTTCCAAATAAAT 177538 23 100.0 49 ....................... GGGCATTAACTCAAACTTTTGCAAACATTGGGAAAGTTTCCAAATAAAT 177610 23 100.0 55 ....................... TTAAATCAGAGATTTCAACAAACCAAATGGGGTATTTCTAGGTTTCCAAATAAAT 177688 23 100.0 51 ....................... TTACCAGCGATCACGCCTGTGAAGTCATTATTAGCAGGTTTCCAAATAAAT 177762 23 100.0 48 ....................... AAACAACCAAAGCAAAGGAGATGCAGAGATGAAAGTTTCCAAATAAAT 177833 23 100.0 51 ....................... AAACGCTATGTATATGATTATTAGGACACCTGAATTTGTTTCCAAATAAAT 177907 23 100.0 53 ....................... AATTTGGAGATGAAGGTGGGCGGCTTGCTTGGATTCCTTGTTTCCAAATAAAT 177983 23 100.0 47 ....................... CTACCCCTAAATCCAATGCAAACTGACGCACAGGTTTCCAAATAAAT 178053 23 100.0 52 ....................... TCAATACCTTGTTTAAAGTATTTTTGAAAACAAAAAATGTTTCCAAATAAAT 178128 23 100.0 51 ....................... ATTAACTTTTGGGGGGACACTCATGTTTTAATTACTAGTTTCCAAATAAAT 178202 23 100.0 52 ....................... GTGAAGTTGAAACAGCTAAAACAGAGGAAGCCCCCACGGTTTCCAAATAAAT 178277 23 100.0 50 ....................... ACGATCAGGAAGAAGTGAAGAAGTTGGTAAAGCCGAGTTTCCAAATAAAT 178350 23 100.0 60 ....................... TTTGCCCTCTATTTTCTTAACTTCTTATATTATAGATTAATTCATCGTTTCCAAATAAAT 178433 23 100.0 53 ....................... GGATCGGAACCCATCACGAACGACAATGCCATCGACAATGTTTCCAAATAAAT 178509 23 100.0 52 ....................... TTTTCTTCTGGATGTACTCGCCAAGACTCAAATCGTTCGTTTCCAAATAAAT 178584 23 100.0 49 ....................... ATTATTTTTAATAATAGCACGATGACACTATATATGTTTCCAAATAAAT 178656 23 100.0 51 ....................... CCTATCTTCCTTATGTGTTCAATTACCTGCTTCTCTAGTTTCCAAATAAAT 178730 23 100.0 52 ....................... TGCGTTAGAAAATATGCAGACATCTATAACCTAGTATTGTTTCCAAATAAAT 178805 23 100.0 50 ....................... CAGCGATCGCATAATTGTTCTTGAAATAATTCTTGGGTTTCCAAATAAAT 178878 23 100.0 54 ....................... GTCAATATTACATAGCTAGTGCTACTTCGGTGAAGGGCATGTTTCCAAATAAAT 178955 23 100.0 49 ....................... TCATTATTCAAAATTGTAGGATTTGGATAATTACCGTTTCCAAATAAAT 179027 23 100.0 51 ....................... CTGTCAGTGGCCAAGGCAAGCGATTAAGAGAAGTCGCGTTTCCAAATAAAT 179101 23 100.0 51 ....................... TATTTTCCATATTTCTATATAAGCCGTATTCCCAATTGTTTCCAAATAAAT 179175 23 100.0 49 ....................... ACAATGATGTTATTAGGAAGACCAAGCAATTGTGCGTTTCCAAATAAAT 179247 23 100.0 54 ....................... CCCAAGATCTATACCAGATTGATGGTACTTTGTATAGGTAGTTTCCAAATAAAT 179324 23 100.0 49 ....................... TTATTAATGTTCGACATCGACATATTAACCTCTGAGTTTCCAAATAAAT 179396 23 100.0 47 ....................... ACGATTGGTTTGGAGTCTCTATCCCTGATGGGGGTTTCCAAATAAAT 179466 23 100.0 57 ....................... ATAATTTCTTGGCTTCCTCAGCAAGTCCTTTAAGAGCGGGAAAGTTTCCAAATAAAT 179546 23 100.0 53 ....................... TCCTAATGGATAGTAAGCTTTGTTTACATATAGTCTAGGGTTTCCAAATAAAT 179622 23 100.0 49 ....................... TTAACACCGAAGCCCGTGCCAGTTGCAGCAACAGTGTTTCCAAATAAAT 179694 23 100.0 48 ....................... GGGACACAATAAAGGTGTGCCAGCGCAGGGGATTGTTTCCAAATAAAT 179765 23 100.0 52 ....................... TTAACTATTCAAATATGTGTCCGCTTCATGGTCAAAATGTTTCCAAATAAAT 179840 23 100.0 50 ....................... CTAGATTATAGATGCGATCGCACCATGCCTTAACTTGTTTCCAAATAAAT 179913 23 100.0 52 ....................... TTTGGGCTATTCGCATCAAGGCAGACGCTTCTAAGGTTGTTTCCAAATAAAT 179988 23 100.0 48 ....................... CTGTATCGTCGCAACAATGAAAGAACAACCAAAAGTTTCCAAATAAAT 180059 23 100.0 49 ....................... GAGAACAATATTACCCGAATTAAAGTTGATTTAGGGTTTCCAAATAAAT 180131 23 100.0 56 ....................... TCTCCATCAATAATCACGATTTCGCCGTGCGCCATGTTTCCAGTTTCCAAATAAAT 180210 23 100.0 52 ....................... GCATCTCAAACACCTGCTGAACCTACCGCACCTGTAAAGTTTCCAAATAAAT 180285 23 100.0 52 ....................... TTGAAGACTTCAAACAAGAATATGGAGATTATTTTGAGGTTTCCAAATAAAT 180360 23 100.0 50 ....................... ACACAAAAGCCTGCCAGCCCGATTGTCACAGGTTTAGTTTCCAAATAAAT 180433 23 100.0 54 ....................... AAAACTTTCCCAAACCAATCAGCATCCGGAATTGAGAAAGGTTTCCAAATAAAT 180510 23 100.0 51 ....................... GTTTTTCTTCTCTTATGGAATCTTTCTTTCTAGAATGGTTTCCAAATAAAT 180584 23 100.0 48 ....................... GATTGAGGAGCTATTTGACTACGCTCTACAACTAGTTTCCAAATAAAT 180655 23 100.0 51 ....................... AAAACATATCAACACTGCTGTCTATATTGGCTTTAAAGTTTCCAAATAAAT 180729 23 100.0 51 ....................... AGATGCTAGTAAGCGAGGATAGCACGCTTGCTTATTAGTTTCCAAATAAAT 180803 23 100.0 55 ....................... TGTTCCCAAGGAATTGAGCGATGGCACAAAATTAAATCCTGGTTTCCAAATAAAT 180881 23 100.0 55 ....................... AAAGCTACAAGCAAGAAATCTAAAATTATTTTGCATGATAGGTTTCCAAATAAAT 180959 23 100.0 48 ....................... ATAGGATTACTGCTGGCGAGGTGGTGACATGATAGTTTCCAAATAAAT 181030 23 100.0 50 ....................... TCTATTCCTAAGTCAGCCGCAGATAGCCCAAATGTCGTTTCCAAATAAAT 181103 23 100.0 54 ....................... AACCACTCAGGATGAAAAGGCCACACCCGCCGATAGCCTGGTTTCCAAATAAAT 181180 23 100.0 55 ....................... GTCCACCTTCATTTTTTAGAGAGATACCCTTATATTGCGGAGTTTCCAAATAAAT 181258 23 100.0 54 ....................... TTTTGTGAGGTTGTGCGAGGGATGCAATATTGCATCCCTGGTTTCCAAATAAAT 181335 23 100.0 51 ....................... ACTACGTAAGAACCGAAAAGCACGGTCAGAATATAAAGTTTCCAAATAAAT 181409 23 100.0 45 ....................... AATTCCCGACAACCAACCGATTATCCCCACGGTTTCCAAATAAAT 181477 23 100.0 53 ....................... CATTTGAAGTTAACGACGAGGTTAAAATCCGTCGTCCAAGTTTCCAAATAAAT 181553 23 100.0 52 ....................... TTCTTTCCCCGATTGTTTTTATAGAAACTATCCACTCAGTTTCCAAATAAAT 181628 23 100.0 50 ....................... CGGATGGCAATATCAGGAAGAATCAGTTCCAGGGATGTTTCCAAATAAAT 181701 23 100.0 52 ....................... AAAAGTCAAATTGCTAACCAATCCGAGAAGCAAGTCAAGTTTCCAAATAAAT 181776 23 100.0 52 ....................... TTGAAGACTTCAAACAAGAATATGGAGATTATTTTGAGGTTTCCAAATAAAT 181851 23 100.0 55 ....................... AAAGCTACAAGCAAGAAATCTAAAATTATTTTGCATGATAGGTTTCCAAATAAAT 181929 23 100.0 49 ....................... TTTTCTGCTGCATGGGTTCAGGACAAGTGGCGACAGTTTCCAAATAAAT 182001 23 100.0 50 ....................... ATTGGATTCCTTTTGAGTGGATTGACAAGATTTTCGGTTTCCAAATAAAT 182074 23 100.0 50 ....................... AGGGATTGAGGTGGATTACTTAGGAAAGCGTCAGGTGTTTCCAAATAAAT 182147 23 100.0 52 ....................... GCATCTTCAACCTCAGCCGATTCAGAAATAAATAGCAGGTTTCCAAATAAAT 182222 23 100.0 51 ....................... ATTGTATAGGTGGGAGGTGTCCGGCTGGAGACAACCAGTTTCCAAATAAAT 182296 23 100.0 53 ....................... ACTATTTCAGGGATTCCCCAAGGGTTTGGCATATTCTATGTTTCCAAATAAAT 182372 23 100.0 50 ....................... TATTGCAGTGTATTGATACACGCTTATAGGCTTTTAGTTTCCAAATAAAT 182445 23 95.7 56 ................T...... CCTCCTGTTTGAGCTTTGTAAACTGCCTTATCTCCAGCGTCAGTTTCCACATAACT 182524 23 95.7 0 ..................A.... | ========== ====== ====== ====== ======================= ============================================================ ================== 84 23 99.9 52 AATCCCCGCAAGGGGACTGAAAC # Left flank : GCGTTTACGAGCTTGGCGACCAAAGGTAGAAATTCTATTACCTTATGATTTAAGACAAAAAATTGCGGCTGATATTACCAAAGAAATAGGACTTTATCATATATAATTTAGTCGATTTAATGCTTCACTATTTGTAACCAAATAAATCTTGACAAGTAACTTGCTACATTTTAACCTTAATATATAGCGGTTCCCGGTTGAGTGAGATACAAGAACCCCACCCCCAACCCCCTCCCCGCAAGCGATGAGGGGGCTATGATGTATTTAATTCAAATGCATACCGCTATAGCGATAAATTTGGCAGACCTAGAGCGGGGGCAAAAACCCTGGAGATCCGCCAAATTGCCAGAACCTTGATAATTGAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCAAAGCCTGAAATGAGGTTTTTTAAGAGGTCTGCCAAAATCGTCTCTAGATTCCGCCCCCAGATTATGTTTCAGATGGCGGGGTTTCCAAATAAAT # Right flank : CCGTGTAAGATACCAAGTATAAAATAATGTAGCATCAAAAAAAAATGCCAAGAGCAGCTACATCCAGCAAACGCAAAACCCCATCAAAAAATACCTCTCTAGTATGGGCAGATAACACCGAATTAGTTGGCTTAGTCTTTGACCTAGAAGCGACCAATTCCACATCCCTATACTCACAATACACCATTGGACTTCATGCTTGGTTTTTAGACCAAGTGCGGCAAATTAACCCAGACCTTTCAGCATATCTGCATGATAGCGAATCAGAAAAACCTTTTAACATTTCTGCCCTCGCAGGTCAACTGCTTCCTACAGGTAAACAACTACAACTACAAGCAAACCAAACTTTAACTTGGCAGATAAACGCCATTTCTCAACCAGTAGTTCAGTTTTTGAGTCAATGGTTAACCCAACTTCCACCTACTCTACAATTAAGGGATGTTCACTTACAAATAAAACAAGTAAGTATTATTCATCCACCAACTACTTATAGCCAACTC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20916-21142 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000081.1 Anabaena cylindrica FACHB-243 contig81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 20916 35 100.0 31 ................................... CGGTGCAACCCCACCCACAAATTATCATCCA 20982 35 94.3 28 .....A..............A.............. TGGTGGAAACACAAATCACCCTGGTCAA 21045 35 97.1 28 ....................A.............. TGGTGGAAACACAAATCCCCCTAGTCAA 21108 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 4 35 97.8 29 TCACCGAGTAAAGGTCAGGCGGGATCTGGCAGTGG # Left flank : CTCAGATTGGTATGGGTTTCGGTTGGAGTGGCGTAGGTTTAAATGCTGGGGTTTCCTTCGTTCCTGTGCCTACCATTCCCTTGATAATTACGGCTCAAGGTGCTGATCTCACAGATAACAGTTTCGGCGGTAGGATATTTGTTCTGACTGTGGGCTATGGTTTCAATTTCCTACCTAGATAGGTTTGATAGCATCAAAAATCAAACAATGCATGAAGGTTTTCAATGATTATGAAAACTTTCTAACTTCTCCTGCTGACTCCTAAAAGGCGGTTGCTCTTGGGAAACCTCAAGACCGTACTGCCTTCTCTTGATTCCTACTCTATGGCTTGCGTCAAGCCACTCCTCACGACAAAGTTTTTCAGCCAACTCTAAATCAGCACTTCAATATCGACTATCTAGAGAATCACCATGTTAAAAATTAGAACCTTTTTTCTCGCTCTGGCTTGTGCGCCTTTAATTTCACTTTCTTTACACTTAACGAATCAAGTCCAAGCGGGT # Right flank : GAGCAAATTCATCTAATATCATTGTTACAAAAGAATTGGATGGGTCTATCAAGATTACGCTTTTACCTGATGCTGTAAAGAGGCTAAATGATATTGCTGCTAGACTGCGTGCTAGTGGAAGGGATAGTAGATTTACACGGGTTAAAGCTATTTTACTTCAGAGATATTTCGTTTTAAATGGGATTCATCCACCATTAGCAAAAGCATTCACAAGTGTATTACCAAATATTTTCTTGACCTCGTCCGATGCTTCTACTACACCCAATCTTCCTTCAGTTCAGTTACCACAAGGAAAGTTAATAGCCAGCATTAAAGCTTTGAAAGCTGGTTTAACAATTGCTGAGGCTAATGAAGCACCAACTGTGAATGTTGATAAATTGAACGAAGCTATTAATATCCACAACAAGATTGTTCTAGAAAGCGATCCAGCAACTTTTCAGCAACTTGTACGAAATTCAGATTTTGTGGAAATTGGTAAAGCTCTCACAGAATTAAGGGCT # Questionable array : NO Score: 2.55 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACCGAGTAAAGGTCAGGCGGGATCTGGCAGTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 29431-31506 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000008.1 Anabaena cylindrica FACHB-243 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 29431 37 100.0 41 ..................................... AAAACTGGAGAATGTACCTTGAATGCCGAGGGAGTATGGGA 29509 37 100.0 39 ..................................... AAGTAAAAGCTGGGTATTTGCCTCAACTTTTTCCCAGTA 29585 37 100.0 35 ..................................... AATCCTGAGAAACCGTGGGAAGATTCGGTTAACTC 29657 37 100.0 39 ..................................... ATCTTAGTCATGAAAAATGGATCGCTTTATGGAGACAAT 29733 37 100.0 39 ..................................... AAAAGCATCTATTCCCAATTCTTTAAGTACTGGTAATTG 29809 37 100.0 33 ..................................... TTCACTATCACCCAGTACCCTGATTCTCCTTGG 29879 37 100.0 33 ..................................... CACATATTTTACTCTCCCCTTCTAAAACATTCT 29949 37 100.0 35 ..................................... ATTATGGCAACAGGCATTAAGTCCATTGTCCATTT 30021 37 100.0 36 ..................................... TAGATTTTCAGAGAATTGGAAAAGCTGTCGTTGCTT 30094 37 100.0 33 ..................................... TCCGCTTCTAGCTGAGTAGGGAAAACGCAGTCA 30164 37 100.0 39 ..................................... GTTACTGTTCCAGTTACAGGCGCGGGGTATGCACTTAGG 30240 37 100.0 35 ..................................... GTCCGGTGAGGGGAAGTCCAGTGGTGGTACATATC 30312 37 100.0 33 ..................................... TTATAGATTTTCTACTAGATATTATTCTCTAAT 30382 37 100.0 44 ..................................... AAAGAAATATCTTCGCCAGTCCGCAATTGCATTATTTTTGGGAT 30463 37 100.0 34 ..................................... TTTAATATTAAATACCCCAGAATTTTCATACCAA 30534 37 100.0 35 ..................................... TTTACACACCTGATACAAATTGCTTTGCAAAAAAG 30606 37 100.0 37 ..................................... TCCACAAAACCCAGAAAGAGACTTTTTCCAACAGCAA 30680 37 100.0 35 ..................................... TCCGCACTTCCTGACAATGAAAAAGTTATTTTATG 30752 37 100.0 33 ..................................... AACACTTTAGGTCAACCTAGGCTTAAGGGGAAT 30822 37 100.0 34 ..................................... GCTACATGGTTTGTTACTCCCAAAAAGTCAGATA 30893 37 100.0 39 ..................................... CAAATCAATAATATTCATAAAACGCCCTGAGAAAAATTA 30969 37 100.0 36 ..................................... AACCGAAATACTTGAGCTACAACGGCAACGGCAATA 31042 37 100.0 39 ..................................... TATTAGATTATCTATTAGATAATTTACCCATACCATAAA 31118 37 100.0 34 ..................................... TTTAGCGAATTGTGATTGATAAGTTTTTCTTTGA 31189 37 100.0 33 ..................................... TTTTTCCAAATTAGGCATGAAGACATCTTCCAG 31259 37 100.0 33 ..................................... TGGACGCTCAAAACCAATGCGCCAACCCCAGTT 31329 37 100.0 33 ..................................... GAAGGAAGTATTTTTACAAATATATTTGCTACA 31399 37 100.0 34 ..................................... AAAACTTTAGTATATTAACTGATGCCACCTACTT 31470 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 29 37 100.0 36 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Left flank : TACACCCTACATCTCACACCAGTCCGGTATATATTGATGAGGGTGTGGTACATTATGGTGTTCCTAATATGCCAGGGGCTGTACCCTGGACATCCACTCAAGCTCTCAACAACAGCACTTTGCCCTATGCTGTGCAGTTGGCTAATTTGGGAATTAAGGCTTTGGATGTTAACCCAGCTTTGGCTAAGGGTTTGAATGTGCAGAATCATCGTTTAATACATCCGGCTGTACAAGAGGTTTTCCCTGATTTGGTGAGTTAATCATCAGCTTTTTCGCGCGGATGGGTAGGTGTAAAAAATTAGAAGTAGCAAAAAATGGCTGTATCTCTTGAGGGGCTTGGTTTTGAGGCTACTAATGTTGATGAACCATCCGCGCACCTTACACAGCATGGGTTTCAGCATTTTTTGTTCTTGACACAATTTCTGAAATGGACTATGATTATCCCATCCGCGTAATCGAACCTTGAAAACCAAATACAGACAGGCTTCCAGGATGCCGCT # Right flank : CCAAAAGCGCAGCATTCAGCGAAGGTGGGATAAATCATTGCAATAATTTGTGTAGTCATAATTTATGCTAGTATTTGGACTATATGTATTTTATAATACTTCTCTTTGCTTTGCGTTCCAAACTTTAGAACAAAACTCTTGTATGGTAAGTTTTACATTGCTTATTTTATAAAGAGTCACAAAAGATAAATATGCCTAATTCTATCAAAGCATCAACTACAGGATTAGAAATTGTTGATAAAGCCCGTCTGCGTTTAGGATGGACTAAAACCAGTACAGCGCGTTGGTGGCAAGATGCTCATACTTCTAAAGCTACTTTACGCCGGTTCTGGCAGGGCGATCGCATTCAGAAAGAAATCTTCATTGCTATCTGTCAAGCTGTAGGTATTAATGAATGGGAAACTATCTCAGATTCATCTGATACCCAATTAGATATTACTACTCCTTTGATTGACTGGAATGAAGCACCTAATATTGAAAGTTTCTATGGCAGAAATGCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 110151-111882 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000083.1 Anabaena cylindrica FACHB-243 contig83, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 110151 37 100.0 41 ..................................... GGATGTCTTAATGCTCGTTGTTCTGTGGGATTCTAGGTCAA 110229 37 100.0 38 ..................................... GAATAAAGAAAGTTGCTGATGTTTTTTAAGCATCCCAT 110304 37 100.0 39 ..................................... TTTTATTAATTATTTATGCTGCTACTGCTGCCAAAGGAA 110380 37 100.0 36 ..................................... CTCTCCACAATGATGAGAGAAACTCACAATCCTAAT 110453 37 100.0 35 ..................................... ATCTGGACTAGGATTTTACGAAAAATGCTTCGCTA 110525 37 100.0 41 ..................................... GGCTTTGGTCTTACCGGATATGCAGAAGGTGAAACCATTAA 110603 37 100.0 34 ..................................... ACTTACTTGTTTAAGAGTGCTAGAAAATTAGTAA 110674 37 100.0 42 ..................................... CAAAGTTTGCTCTGTCACAAGCCATATCCATACGCTACGCAA 110753 37 100.0 34 ..................................... TACAGATGGTTTCAAAGACATACGTATTATCGTA 110824 37 100.0 34 ..................................... CTCTGATTTGCAAAGTAACGGTGTTGGCGCAATA 110895 37 100.0 33 ..................................... ATTCGACTAAACTAGTTACAGGTTTTATTTTAT 110965 37 100.0 36 ..................................... TTATCTCCCTCTGGTTCAACTCAAAGAGGTTGTATT 111038 37 100.0 38 ..................................... ACGGCAATAGTCCAGAAGAAACTTACCAAATTCTTCAA 111113 37 100.0 41 ..................................... AGAACCAACACCATAAATAGTGGAAGAAATACCAAGCGCAG 111191 37 100.0 33 ..................................... ATCTCTTGCTCAAAGGATTATCCAGGATTATTA 111261 37 100.0 40 ..................................... GCGATGAAATAATGAGTGAAATAAACGCTCTAAGGGGAGA 111338 37 100.0 36 ..................................... CACGTAATTTATCAGCATATTTATCTGGAAGCTCAA 111411 37 100.0 33 ..................................... GGAGGAAGCCCCCCCGACTTGTTCGGGGGGGGT 111481 37 100.0 37 ..................................... TCTTCTAGAAATATGAGGATATCTACTGATTTGAGCC 111555 37 100.0 37 ..................................... ATTGAAACTAAACTCATCAGCAAATGTGGAAGAAAGA 111629 37 100.0 34 ..................................... TCCAAGCAAGGCGACCACCCTCCTCACCAAATCT 111700 37 100.0 37 ..................................... GTCTTTGGAATTTCAACTGGAATGCTAGTGATAAGCA 111774 37 100.0 35 ..................................... GTGATAGGTTTGTCTCTTGTTCCTGGGTACGGAAA 111846 37 94.6 0 ...................................TG | ========== ====== ====== ====== ===================================== ========================================== ================== 24 37 99.8 37 ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Left flank : GATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGGCGGACTAAAATCCATAATATTCTCAAGTCTTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTGACTGACACTCAGTATGCTAAACTGCGATCGCGCCTCAATAAGCTGATTAAGCCGAATACTGATAGCATTCGCTTTTATTTTCTTTGTGCTTGCTGCTTTGGTAAGGTGGAACGAATCGGTGGTGAACAACCCCTCGATACGACGATTTTCTTCGCTTAATGCGCGAGGGGGTGGGTGTAAAAAATCTGGGTTCTCAAAAAATGCCTAAATTCACATCTATACAAGGCTTTGATGGATTTTTTTGATTCGCCCGCCCGCGCACCTTACACAGCAAGGGTTTCAGCCATTTTGACTCTTGACACATTTTCTGAAATGGACTATGATGAGAGCGATCGCGCAACCGCACCTTGAAAACTATATATATAAAGGCTTTCAGCCTCCCGCT # Right flank : GCACTAAGAAAAGAGATCAAAAATCTCGAATCACGCTCTAGCAATAGATTTGAAAGAATCAAATAGAGAAGTGCTATTCAGTATATTGAAGAGATAGGTAAAAAGAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 87931-90143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRP010000090.1 Anabaena cylindrica FACHB-243 contig90, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 87931 35 88.6 36 AC...T.A........................... ATTTCAATTACAAAGCAACACTTTCAACATTTTGTT 88002 35 100.0 43 ................................... ATTGTGATATTTGTTATAATTAGAGTTTCGTATTCTATTAAAA 88080 35 100.0 36 ................................... TTGGTTGCCAAGGGCGACCAAGGAACAATCGACAAT 88151 35 100.0 36 ................................... AATGTTTTACTAAAAGCAAAGAATATGTGTCTTGAG 88222 35 100.0 35 ................................... TTTTAGAGAGCTAAAATTTCAGTCCAACTTAGAGG 88292 35 100.0 37 ................................... TATAGCTTATATATTGATATCTTTGTTTGTATCTGCT 88364 35 100.0 41 ................................... GTATTGGTGGTCGACTACGGCAATGAGTGCAATTGCCTTGA 88440 35 100.0 37 ................................... TAGTTGTTATGTTAGGCATAACAACCGGAAATCAGAT 88512 35 100.0 37 ................................... TTCTGCCTCAAAAGATCTCGCTGATTCTGCACGAAAA 88584 35 100.0 41 ................................... TTGCAAAATGATTTAGAAACTGAATAGAATAACGCCACCGA 88660 35 100.0 39 ................................... TGGTGGAAACGGAGGAAACTCCACCTCCCAAGGCGGCAA 88734 35 100.0 39 ................................... TTTACAACTGGTATTTGGGTTGATACAGCCCACGTGAGG 88808 35 100.0 39 ................................... TTTGATGAAAAAATCTTGAAAGAGCAAGGGTACCCTCCT 88882 35 100.0 36 ................................... TTTTTATAGTTCAGGCGATGTTACGCTTGTTTTTTC 88953 35 100.0 37 ................................... AATCCCACTGAGAAGGATAAAAGAGTTCTGGAAAGAG 89025 35 100.0 40 ................................... TGTTTAGCTGTTTCATTAATATTCCTGGCAACAGGTCACG 89100 35 100.0 39 ................................... TTGCTTGGCTCCATGACGCGTTTAGTTGGTGTACGAACA 89174 35 100.0 39 ................................... AACTGATAGTCCTGCTCCAACTTTTGCGATAGTGGAATT 89248 35 100.0 38 ................................... TTTTTCAAGTCCAGTTTTGGCTCAGTCTCAGTCTGAAA 89321 35 100.0 34 ................................... TCAAGTTGTGGAAATTTACACAGTTAGAAAAAAA 89390 35 100.0 37 ................................... AAGTGTCAACACTGTAACTGCATGGTTGAAGAAGCTT 89462 35 100.0 35 ................................... ATTAGTCGGAGTTGCCACCCATGCGGCTCTCGCCG 89532 35 100.0 39 ................................... AAATAGCTTCAGCCTTACAAAGGCTCAAAAATTCGCAAG 89606 35 100.0 38 ................................... AACATGGAACTCAGTATCGCATTCAGGTTTCCAACCAA 89679 35 100.0 35 ................................... ACTACAAAAAGCCGATGGAAGTTGTTTTATTTGAG 89749 35 100.0 38 ................................... TAATGATGCAGTATTGGTACCAAGAGAAATTGAGATAA 89822 35 100.0 37 ................................... CGCTTTCTATTTTGGGTTATCTTGAATGGAAAAGACA 89894 35 100.0 36 ................................... TACAACTAACAACAATGGAACAGTTACATTGATGTA 89965 35 100.0 39 ................................... AGAGAAAATCATTTCTTTTTTAGATTCAAAACAGAAAAC 90039 35 100.0 35 ................................... AGTTTCAGCACCCATTTTATTCATGCTGTTTCCTC 90109 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 31 35 99.6 38 GTTTCCATTAGTTCAACTTTCTAAGAAGTTAAAAG # Left flank : CAATCTACCAATAATTTCGCCAAATGGAGTTATGTACAAGACGGGAATTTGATGAGCAACTACAACTTTAATTATTTCTTTTGGCAAGGTGATGTTACCAAAAAGAATGATTTGGCTGACGTTACTGATTCTCAGGCTTACACATTGTTTTTGTTGATGGAACACCTTTAAATAATGGTGTTGGATTTGAAGGTTTGCATCTTGTTCGGTGATATAAATTGTGGACATGGTTAGAATTAAGTAAAAGGTTAAGAAGTAAAAAGTTGAAAGATGGTGGAATATTCTTGTTTTTTGTTGGCTTTACTTTTTACTTAATTACATACTCTCAGATGGATATATAACCTAATATATAATTCAAATTCATTTGTGTATAAGTTTGTATATAACTTAAATAATGGCTAGACTGATAATTAAAAACTCAATAATTCACGCTAAAAAATAACCCCAATTTCTCAAATAAGTTGGGGTTATAGGGTTTATGACTTGTATTCTATAATTCA # Right flank : GGGCTAGGCTATGAAAGCCTTACCTGGTGGAAATCCTACAGCAGATTTTCGGGGCTTGTCAAATTTATGCAAAATCAAGAGCCTAAATTGAAAATAACCCTGGATAAAAAAGCCTGAAACCATTACTGTGTAACCCTGCCGGGGCTGCCAACGAAAGAATCAGGGTTTGGGGCTTTGGGCTTCAGCCCCGAAACAAGCAAACAGTTAAGTTTTACTTATCCCAAATCATCGGACGATACACCTCAACCTCACCCATTAAACAAGCAATATATTCTCGCACCTGTAACTCGATACAACGGCGATAAGGCAATTTACAATCGGTATGAGGATGAGTTACTTCTGTTTGTAGCTTTTCCTCCCAATGCTTGAGAAACTTTTTGAGTGCATGAGGTTGAAAATACACTCCATTACGTTCATCTGGTGAGGTAAAATCGTCAATTGTAAACAGGTTTCGATTTACTAGATATATTACCAGAGAATCAACAACCAAAGCCCGAAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAGTTCAACTTTCTAAGAAGTTAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //