Array 1 36988-34060 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFD01000022.1 Porphyromonas gulae strain COT-052 OH2857 contig_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 36987 30 86.7 36 T........T.C.C................ TGCAGTCCCTTAACGCCCCCGCCGTTCAGTTCGAGC 36921 30 100.0 35 .............................. TGATACCTGCGATCGTCAGCATGCCGAATTACAAA 36856 30 100.0 34 .............................. AAAAGACGATCGAGATACCATGCTTCTCCACCAC 36792 30 100.0 37 .............................. TCGACGAAGTGCGTCGGTATCTGTTTCTTTTTGCGAT 36725 30 100.0 35 .............................. TCATTTTCTTGATGTCACGAAAAAGGTCATCGCTT 36660 30 100.0 35 .............................. AAAATATCTGCAGATACGCTTGCTCTGTACGAGAC 36595 30 100.0 38 .............................. AGCTGAGAAGCTGGAGGGCATAATTCGCGCTAAGATGG 36527 30 100.0 37 .............................. CAATATCGAAATTGACGGTCTTTTGAACCTCTCTGAA 36460 30 100.0 34 .............................. GATCAGAGAGGCCGTTGACTTGATCCTTCAGCGC 36396 30 100.0 37 .............................. AAGTACCAGTCCCAAGGATAATCCGCGCGCACGAGTC 36329 30 100.0 36 .............................. ATAACTTGATTGTAGGGTAACAGAAGCCGTCCCCTT 36263 30 100.0 34 .............................. GGATCTACTGGCCCAAGAGGTAAGAACTTTTTTT 36199 30 100.0 36 .............................. TGTTCGGGATAGCGTCAGTTGGCGGTTATAGCTTTC 36133 30 100.0 36 .............................. CTACAGCTCACAGGTCGAAACGTTGAAAAAGATGAT 36067 30 100.0 36 .............................. ACTTCTTGCAGTTCTTACAAAGCCGTTGAATATCAC 36001 30 100.0 36 .............................. AGGAGCAATAGGCTCCAAGAACGCTCCTACCATCCA 35935 30 100.0 37 .............................. TAACTTTGCTCATATTTTGTTCTTAAAAATTAAAGAG 35868 30 100.0 35 .............................. TTGAGTAATGTACTCATCTTAAAAAAAATACCCCT 35803 30 100.0 36 .............................. GCGTAGACCCCTCAGGCAGCTGAATGTTGTGCTGCT 35737 30 100.0 37 .............................. AGAGTGCCTTGAAGAAGGCCAAAGAGGAGTTGCTAAA 35670 30 100.0 36 .............................. AGCCAGGAAGTTCATTATAAGAGCCTCCTAACTTGT 35604 30 100.0 37 .............................. TGAAACTCTTTGAGCCGCTCATCTTTTAGTTTTTGCT 35537 30 100.0 37 .............................. TCTCCCTGTCCATGTGTCGTTCTCTTTTAGTTTCCCT 35470 30 100.0 35 .............................. AGCTTCAGCGAATGCCTGTGCTTCATCTTTCAGCA 35405 30 100.0 35 .............................. TTCCTGCATCAAAGCAGAGAATCAAAGGCAAATGT 35340 30 100.0 36 .............................. GCCACTTCGTGATATGCCAGATGAAGGTCAAGCAGT 35274 30 100.0 36 .............................. TGAGAGCACAATATGACGTTACCGTGCTCTGGCACA 35208 30 100.0 36 .............................. TCTTAAGTTATGTTAAAAATTAATTCTTTTACATAT 35142 30 100.0 36 .............................. CAACTGCCGTTTCATTACTTTCCGGCCTTTCTTCTA 35076 30 100.0 36 .............................. TTCAAGGTATTGAATACAACTTAACAAAAGTAAGTG 35010 30 100.0 36 .............................. TTACACTTTCACATACAGACTCTCTGACGACAAGGG 34944 30 100.0 34 .............................. GTAACCACGTTGTCTACAATCGCCTGTTGTTCAC 34880 30 100.0 37 .............................. AAGGAGTGCCCTCTAAGTATTTCTGCAGCGACCCGAT 34813 30 100.0 38 .............................. ATGTTATCCCGACCACCTCGAACGAGCCCGCCTCGCTG 34745 30 100.0 36 .............................. AGTTTCACCGTGACGGACAAGATGAGCTGGATCACG 34679 30 100.0 36 .............................. GCACCTCATCAGAATGATCTGATACCGACACTGCAG 34613 30 100.0 36 .............................. ATCCGGCTCGACGGACGTGCGACTCCAGCTTGCGGA 34547 30 100.0 36 .............................. CACAGCAGAAGGCTAACGCTGCAGTCAGTGCCGCAG 34481 30 100.0 36 .............................. ACCGCCTCCGGGAAGGAGATGCCTTCATGCTCCTGC 34415 30 100.0 36 .............................. AATGATTTCTTAAACTGCTCTTCATTGTTTATTTCA 34349 30 100.0 35 .............................. CTCAAGCGTCCACGTTATTTCTAAGAATTGAATGT 34284 30 100.0 35 .............................. ATTAATAAACAAATGTTTATTATAATTCCAAAATT 34219 30 100.0 36 .............................. TATTAATAAACAAATGTTTATTATAATTCCAAAATT 34153 30 100.0 34 .............................. TCGTAAATAACACAAATTATCGCTTCGACTTACG 34089 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 45 30 99.7 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CACCTGGGGTAGAGCGATATCGTATACGGTGTCGCCCTTCTCCACGGTGACCACGGTTCCGTGCCGCAGCATGGAATCCGGTATCCCTAAGCGCGGCTCCTGAGTGTACAATCGGCTCAAAGCCAACAACTTCAAACCCAACAAAAGCAAGGCTTTTCTATACATGTCTCAAACTTACAAAAAAACGACTGAGACTGCTTATACAATCGCAGCAAAAAAATACAATCGATTGATTTTCAAAATATTCTATACAAACCCACAACTCCGCATCCATCCCGATATTCTTTGTAGACCGTTTCCGGATATTTCCTCATTATCGCCAAAGAAATCCTTTTGACAATGGCCCTCTCTCCAATTATTTTGACTCCAAAAATTCCCTGTTCTATAGGCTCAAAAACGTGGCGCGGGAATTTTTTCGGTTTGGTTGGGGAAGTAAAAAATTCTCGTTAAGGAACAATTGAAATGGCATGCAACGGCAAGGTTCTCCGTGACGGAGCTAA # Right flank : CCGTCACAAATATAGGTTTTTCGGTTTGAATGTGAGAGGGTTACGAGAAAGCGAACCCCAATATTCAGACATTATAGTTGTCGATGTCCGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCAAGGGTTAATCATGACAAAAGGCTGGACGAATTTGTTCGAATCGACGCTTCAAAAGATAGATGACGGGAGCTGTATCGTGCTGTATTATAGGAATATATCTGTCGCAGCTCGCTCTTTGCCGATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCCTCTTTTTCCATGATTCTGGCAGCTCTGTTCTTCAGTTCTAAGAGTTTGACATCGGAGATTTCTCCCTCGAACACAGAGTTCTGAATCCAATTCAGATACTTTCTGCACAGTTTTAGCATTTTGCCAACGCGCTTTTCCCCGATATCGTACACTAAAAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 33990-33072 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFD01000023.1 Porphyromonas gulae strain COT-052 OH2857 contig_23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 33989 37 100.0 35 ..................................... ATCAACAAGATTTGGATAGCAGAGGTTGGTATTCT 33917 37 100.0 36 ..................................... GTGGATTCTTTAGATTTTCGAATGAAAAATAAAGGA 33844 37 100.0 36 ..................................... GAAAATGATGATGAAATAGGCATCTGGATCAATGGA 33771 37 100.0 36 ..................................... TTCTAGACTTGGTACATGAAGTAGAAATAGCAATCT 33698 37 100.0 34 ..................................... TTGAAATACTTATTAGAGTCTTTAGTTGAAATAA 33627 37 100.0 38 ..................................... TAGAAAGATCACAGCTCCTTCTGGTTATTCAGTTCAGG 33552 37 89.2 37 ...............................T.A.TC TTTTTGGATGACATATTCTCTCTTCACAGGGAACAAA 33478 37 100.0 36 ..................................... GTCTGAAATCATAATAATCATGAGTGTTATACTTGC 33405 37 100.0 36 ..................................... TGACCGAAAAAGATGTGGAAAATTTGATCAATTTTC 33332 37 100.0 36 ..................................... TTAAAATAAAAAAATAATATGCAACAACTTAAAGTC 33259 37 100.0 38 ..................................... AAATATATTTGTTTGGTTTTAGGGCAAAAAAAGATCAA 33184 37 100.0 39 ..................................... CTTTTCATAAAGACATATGTTGGAGAAGTCTATGAAATC 33108 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 13 37 99.2 36 GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Left flank : AGATGCAGGGGTGAAGTTCTCTTCGATGCACTATACTTTCCAAGGCAAGGACTATCCATACGGTTCTTTCCCGACAGAGAGCGAATTGGGAGCGCATCTGTCTGCCATCAAGCAGGATATTTTGGGTCGTATCCGAGATGTTGTAGAAGGGTAAGAGCTTAGAACCGGCTTCGGAGGTCTCGGAAGTCTCGGATTTCAATTATTCCGATCGGATTTTCTCGAACCGCAATTGCTGCGATTGTGGCGCGTGTTTTCGGGAAAAGCGGCGCGGGATTTTTTTCGCTGTGGCACGGGAAGTAAAAAATTCTCGAACCACAGCGAAAAAAATCTCGCGCCACGTTTTTCGGAGCATCGAAATAGAAAATTATGGTGCGCAAACGGCCTTGGCTCGCACACAAGCGGAAGGCTGTGATTATGCTCTTATCTTGTGCAAAACACAATATTAACCGCTCCAAAATCTAACTTGGAAAGTCCAAGTGATGATGAGTAGAGCATCAAGA # Right flank : AACTTGAGTGACTGCAAGTTACGAATAATCCCAAACGTAACGCACTGGCAGAGAACGATTCTATTTTTTTCGAAAATGCAAATTGAGAAATGTAGCTATAACACCATTTTTGCTGTTGAGCTGATTATATCTTATTGATATACAATCAGATTAGCTGATTTTCTATTTTCGAAAATCAGAAAGAGGGAACCTTCGTTTTTGGCATTTTCGAAAATAGAGAAAGACACCATTTGATAATCAAACACTTACAAATAGCGAAACGCCCCTGTTTTTCGAAAATAAAAGCCCCAATTCTCCTTTTCTCCTATTTTCGAAAAAAAGGAGAAAAGAGTTGTTTTTGCAACCGGTTGATAATCAGTATGTCAAAGAGCGATGCGTGGTTCTATTTTTTCGAAAAACTAAACCACTATACTTTTCCTTTTTCTACGGCTCTTAGGTGGGGTCGGATGTCCGTTCATCCAAGCTGCAGCATAACAATGCTGACAGAGAGGGAGAAAAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGCCTTACGGACTGTGTATGTATAGTGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 99-727 **** Predicted by CRISPRDetect 2.4 *** >NZ_JRFD01000046.1 Porphyromonas gulae strain COT-052 OH2857 contig_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 99 36 100.0 30 .................................... GAAGTACAGCTCAATAACAACTACAAGATT 165 36 100.0 30 .................................... AGCAGGTGCCGATCGTACCCGAAACTGGTA 231 36 100.0 30 .................................... TGGAATGGCGGCATTTATGCTGTCTTGGTT 297 36 100.0 30 .................................... TGTTCCTTCTTTTGCTCTTATTACCATTCC 363 36 100.0 30 .................................... AAATATGAGAAGAAAGACGAGACAAATGTT 429 36 100.0 29 .................................... ATGGATAGTAAGGGTGCGACAATCGAATA 494 36 100.0 30 .................................... AAGGCCGCTTCGTTGATTATATGAATGTTT 560 36 100.0 30 .................................... TTATGTCTGCATCTTTGGCTTTCATTGCTT 626 36 100.0 30 .................................... ATCAGCGAAAACAATAGTTTTTTTTTCATT 692 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 10 36 100.0 30 GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Left flank : CTATGAAGATAAGAAAACTTGCAGATTTAGCAAAGATATTCGCAAACTAATTTGCTGAATATCAGAGATTAAAAAGAATTTTAAGGGACGACTATTTAG # Right flank : CCTACCCCCATCGAATTTGAGACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGTGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTACGTTCCTGCCGGTTCGCACTCAAAAGTTCAAAGTTCGCCCCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACGGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGCTATCCCTCTCCGAAAGCAAAAGGCCGTAAACGATACTTCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAACACCGTTGCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAAGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //