Array 1 99054-98225 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRB01000142.1 Paenibacillus riograndensis strain CAS34 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 99053 32 100.0 36 ................................ AAATATCATCCTGCTGATTGTAATCGGCGGGTTATT 98985 32 100.0 33 ................................ ACGTTCTCGATCCATATCTTTCGCCGCTGAGAT 98920 32 100.0 34 ................................ AATTCCGGAGTAGAAACCTTGCCGGTTGAAGTAA 98854 32 100.0 33 ................................ TCACGCCAATTCTACGAGCTGGCTAGTACAACT 98789 32 100.0 38 ................................ TTGATTAAATCAGCCCTAACAGGTACAGGCTTTGCCAT 98719 32 100.0 33 ................................ TCTCCTTTTATGCGTTTAAGGGTGGTACGGGCC 98654 32 90.6 35 ............AC......A........... TCCGGCAATGTGTAGATATTAGGACTTCCCGCCGA 98587 32 90.6 34 ...........CAC.................. ATGGTATGACGTAGCTTATAAGCACGTATAGCCT 98521 32 93.8 35 ............AC.................. CCAAACGGTTGTGCCGAAACCAACATCACCACGCG 98454 32 90.6 34 ..........GCA................... TTCCTATGGATTTAGAGGCGACAATCCAACAGGA 98388 32 84.4 35 T.........GCAC.................. CAATACAAGCACCCGACAATTAAGGGGAAGGTTAC 98321 30 90.6 35 ...A......--.................... TGGTCCGGGCCCATATAGTGAAGCGCCTGCTTTCC 98256 32 84.4 0 ...C.......C.C....A.C........... | ========== ====== ====== ====== ================================ ====================================== ================== 13 32 94.2 35 GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Left flank : AACTTGATATTTTTTGCTATTTCTATAGGTCTTCACAAGTAGCGTCAAGATGAAACTAACAATCCGCACCATCTTAAGATATGTAGGCTGTTGAAGGTTTGACTGATGGTGCTCGGAAACTGTAAAAAAGTGTTCGATTGTTCTCCAGACAATGCCGGATTTTTCCTTATTGTGCTGTTATAATGAAGGAAACGTATGTTCCTTAGGTGTGGTATTGTTCATCTGTTTGTTTGCGGAGATATTGGCGGGAGTAGAACTCCAAGCACAAGAATAAAGTCAAACATGCAGGCATAAAGAAATCCATTGACCCGGATGGGCCTTTAATTTTGTAGTGCGAATGTATAGTGCACATGAAATCCCCGGGTCCTTCGCACCGGATTTATTACATTATTTGTTATAATGATCAAGATGTGCTTATGTAATTGTTAATTATTTTGATATTCAAGCGGTTGTTAACCATAATAAAAGAATTTATATCCTTTATTTGGTTGGAAATCGCT # Right flank : AAACTAACAAGTATCTAAAACACCTAACATCATGGTAAAATATTGTGACTTGTCTTGTTACAGTCCATCCTAAATTCAGCAGGTGACCGTGTTGAGATTACGAGAGTTCATGAGCCCTTCGGGGACCTCGGCCTACCGGCAGGCGAAGTGGATCAAACGTTTTTTGCAGACTTATTGGCTTGTAATTGCCCTGCATTTTCTGGCCCAGCTTGCGGCTTATACTTTTCTCCCGTATGAGAGGGGGGCGCATGAATTTTATTATGGGGTTCTGCTGTACCCGACTTTGCTGATGGGGGCGGTTGTGGGCATAGCCCAGTGGATCGACCGTCGTGCTTCCAAGTATTCGTTCCTCTCTCTTTTTATGGCCGGTACCATTATTGCGATGATCATCATCCACCTGAATATGGATATCCGCATTATTGGAGCGCTTATGCTGCTGCCCATCTTCGCTTCGGCGATTTTTTACCGGCTGGATTTAACTTTTTTTACGTTTGCACTGC # Questionable array : NO Score: 8.74 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.80,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 104551-101864 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRB01000142.1 Paenibacillus riograndensis strain CAS34 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 104550 32 100.0 35 ................................ TGACTGGTTATGGCCTGTTTTACTACAAACAAGAG 104483 32 100.0 33 ................................ ACCGTCACTATACCACGAAAATCAGGAGGCGTA 104418 32 100.0 35 ................................ AGGGTACTGTTGATAAATCAATTCTAGAGCAGCGC 104351 32 100.0 33 ................................ TTCGCTTAGACAACGAGGTCCCCGCCGCGATCC 104286 32 100.0 33 ................................ CGTTCTTACGTTTTCATTTTTCGCCAGCTCCGG 104221 32 100.0 35 ................................ GATAATCCCGCGCCGGCTGCGAGTCCCGCAATTGC 104154 32 100.0 34 ................................ GCTTCGCTCGGTCAAAGCTGACGGTTACAGTGTC 104088 32 100.0 35 ................................ AGAAAGCAAAGGGCGCGGCATTTACAAAAGACATA 104021 32 100.0 36 ................................ TTGAAGCAATTCAACAAGTTCGTCAATTACGAACGC 103953 32 100.0 36 ................................ AACGCCACTCAATTAAGAATCATCATGATCATCTGG 103885 32 100.0 34 ................................ TGGTTATAGAGGCTCACAAGACTGTTTCCATATT 103819 32 100.0 35 ................................ TTCAGAGGCAGGCGGTTCCTGTGTGACTACTTTTG 103752 32 100.0 33 ................................ TCCATTAATTCGCCGTGACCATGCTCGAACGGC 103687 32 100.0 32 ................................ CCTGTCACAGGTCCACACCTACGTTGAAGTTC 103623 32 100.0 34 ................................ CTGTTTCTGGAGGTTTATTACCTCCCCCTATGCT 103557 32 100.0 33 ................................ CAACACACATTTTTAGGTAAGGAGATTAACCCC 103492 32 100.0 35 ................................ AGGATAAAACCTTGTCTGACCGATATTTGAACCGC 103425 32 100.0 37 ................................ CGTGATAAATTCACCAGCAGCGCCGATGACCCTGCAT 103356 32 100.0 36 ................................ TTTTTCAAAATAGATTTTCATCCCGATTTCCAAAAC 103288 32 100.0 33 ................................ TTTGAAGCGCGCGCCTCAATAAATTTGTTGTAG 103223 32 100.0 35 ................................ ATTTATCATCACCTAATCAGATATTAAACGTTTTG GTGC [103197] 103152 32 100.0 35 ................................ TCCAATAATTCTTGAGTATCCACGCACTGGATTTC 103085 32 96.9 33 ...........C.................... CTGCAGGAGTGCCTGACATTTGTCTACGATGAC 103020 32 96.9 34 ...........C.................... ATAGGCATGAGTATGGAAATCATACCCTGGCCTC 102954 32 96.9 34 ...........C.................... TCTGTTTTCACTATGACCTACGCCAGGAGTCCGA 102888 32 96.9 35 ...........C.................... GTTTCAAGCATTGCTCTACCCCAAGCTTCCCTACA 102821 32 96.9 34 ...........C.................... ATGAATACGAATGCTTGCCAGAATATTCCTCCGA 102755 32 96.9 34 ...........C.................... CTCCTCTGAAGATTATAGTTCAAGTATAAAAGAT 102689 32 96.9 36 ...........C.................... CGCGATGCTTACCAGTTCTTGGCCCAAGGGCAGGAG 102621 32 96.9 35 ...........C.................... ATTGCCGTGGAAGGCAGTACAACCCTGACTTTTGC 102554 32 96.9 34 ...........C.................... GCGAAATTGCGGATACGTGTCGCGGCGTTATCTG 102488 32 96.9 33 ...........C.................... CTGGAGTCCCTGGTGGAATACCTGAAAGGCCTG 102423 32 96.9 33 ...........C.................... TTCTTCCCCACGTTGGCTTTGCCAATGTGATTG 102358 32 96.9 35 .................A.............. CCTTCAATGTCAAAAAAGTTCTGTAGGAAGCCAAT 102291 32 96.9 35 .................A.............. AAGCTACAACACCTCTCTTTACGGCCTGCCAAGCC 102224 32 84.4 35 ..T........C.G.T.A.............. TGAAGGATCTCAAAGAAGTATGGGAAAATATACTG 102157 32 93.8 33 ...........C.....A.............. ACCAGCAATAGAACGGTGTTGGCGATACTGATT 102092 32 96.9 34 .................A.............. GTTGTAGTAGACAAGCTGCAGAGGTCTGTAGGCC 102026 32 90.6 33 ............A....A.T............ ATTACTCGGGCCTGTGATACGTACCGATCAGTG 101961 32 93.8 34 ...........C.....A.............. CTCCAAAGGTGCCTCACGTTCGGCCCAAAATAGA 101895 32 75.0 0 .C.........CA....AA...AC..C..... | ========== ====== ====== ====== ================================ ===================================== ================== 41 32 97.4 34 GTCGCTCCTTATGTAGGGGCGTGGATTGAAAT # Left flank : TGGATGAGTATCCTCCGTTTCTGTGGAAGTAGGTGCACGGAATGTTGGTGGTGATTACTTACGATGTAAGCACCCTTAGTGGTGAAGGTCAGAGTCGGCTGCGTAAAGTCTCTAAGATCTGTCAAAACTATGGACAGAGAGTTCAGAATTCTGTTTTTGAGTGCGTTGTAGATGCAGCGCAGTTTGCTGAATTGAAAATAAAATTGAAGACTATAATTGATCATGATGAAGACAGCATAAGATTTTATCAGCTTGGTAATAATCACAAAAATAAAGTCGAACATGTAGGAATAAAGAAATCCATTGACCTGGAAGGGCCCTTAATTTTGTAGTGCGAATGTATAGCGCACATGAAATCCCCGGGTCCTTCGCACCGGATTTATTACATTATTTGTTATAAAGATCAAGATGTTCTTACGTGATTGTTAATTATTTTGAGATTTAAGCGGTTTTTGACCATAATAAAAGTATTTTTATCCTTTATTTGGTTGAAAATCGCT # Right flank : TGTTAGAGAGAAAGTCAACAGCAAAAAAGCACCGGAATTCCGCCTAAGCCGAATTTGGTGCTTTTTCTATCTGAGGTTATTCTTTGCGGCATACTTCGAACAATATATTCTTTATTAATATAGTGCCCAGTTTGCAGTAGAGGTTACTTTGCGAACACAATCCTGTACATCCCTTAGCAAAAAAACGGAGGAAGCCATATGTCTAAACGCCTCCCTTGCAATCTAAATACTCAAGCTAAAAACACGGAAACGGGAAAGTCTAGATTTTCTACTTAATCGGAAAGTAAATATCAATTTCAGAGCTTTCTATGTTTTCTCCTGCAAATCGTTCAGTATAACATTCAAAGTCATCACGGTTATCAAGCTCATAGCCGCTTTTAGGAAACCAGACGCCCCAAATATAATGATAGGTCTGCATTAAGTTTTTTACGACTCCTTTATGAATAAACCTTGCATATTTTCCGCCGCGTATTGTTTTTCTTTCCATACCTCTAAGAATA # Questionable array : NO Score: 8.95 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.82, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTAGGGGCGTGGATTGAAAT # Alternate repeat : GTCGCTCCTTACGTAGGGGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 114333-113034 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRB01000142.1 Paenibacillus riograndensis strain CAS34 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 114332 32 100.0 34 ................................ ACACAAAATATTTTGTGACAATTTTGTGAACATC 114266 32 100.0 34 ................................ AAGGAAATGCCCAAAGGAATGAATGGCTATAGCC 114200 32 100.0 36 ................................ TCCCTCCGTTATATACTCCGCCTCCTCCGTGAATAC 114132 32 100.0 33 ................................ TAAGATTGGAGGCGAACTATGGCAAATAAGATT 114067 32 100.0 36 ................................ GAATCGATCCGTCAGGCCCTCCGCCAGCTTCATCAA 113999 32 100.0 36 ................................ TGGTCAGAGAGCGCCGGGAAAACGAATGTCATATAT 113931 32 100.0 33 ................................ TATGGAGAAACATGCACAGGCTACTGTTGCAAA 113866 32 100.0 33 ................................ TTCAAGTGCGTCAATGTATGGCCTGTGATAAAT 113801 32 100.0 36 ................................ TTTGATGGCCTGCAATAACAGAGTCGGCGTTAACAT 113733 32 100.0 35 ................................ GTTTCTGATCTCTGCAAGCTCCCGCATCACTGCTG 113666 32 100.0 36 ................................ ATAGCGTAACCTCCCGTTTAAGGCCCGTCGGCACGA 113598 32 100.0 35 ................................ AGCTTCCTGGTTCAGAAGTGGAAGGGGCAGAAACA 113531 32 100.0 34 ................................ AGGAACTTTTGCGTAATACGGTAACACGATCTGC 113465 32 96.9 34 ..........G..................... GTTCTGCTGATGTTGCTGCGGCAGCTGTGTACGA 113399 32 93.8 34 ......T...G..................... TTCATCTGGGTCCCCATCGTCAGGCCATTTTATT 113333 32 93.8 36 ..........G...A................. GTTTATCATGCAAAAGAACTCTTTCTGCATTTTCAT 113265 32 93.8 34 ..........G...A................. GAGTAAGAAAACCATATACTTGCGCGATATCTCT 113199 32 96.9 34 ..........G..................... CTCCAATGCTTCCGGCTCCACGATCAGCAGTAAC 113133 32 96.9 36 ..........G..................... ATTGTAGGTGTCAGCAAAGCGCTTAAGCATATCCTT 113065 32 93.8 0 ........C....C.................. | ========== ====== ====== ====== ================================ ==================================== ================== 20 32 98.3 35 GTCGCTCCTTACATGGGAGCGTGGATTGAAAT # Left flank : TCTAAATAAAGGTACGAGTATGCGTGGGAGCGTAAACTGAAATAGTTAAGCTGCTGGTTAGTCATCTGCTCCGTGCCCAACAATATGAATTAGAGTAAAGCTTTAAGCTAAGGAGATATTTTGATTCAACACTCTTGATTTCTGCCCATTACCATATGCGCTTAGTATGGAGATTGCGTAGTCACCATCAATTCAAGACTGACATTGCCACAATGTAAGAGTGTAGCCTTTTTTGGATGAATAAAATTGTCACTAATGGTAAAATATACTGCTCGCATGATCTGAAATGGCGTACAATAGACGGTACCTACATTTGGAGGTCAAATTTCTGGTGCGAATGTATAGCTCACATGAAATCCCCGGGTCCTTCGCACCTGATTTATTACATTATTTTCAAGAAATATAAGAATGGATTTCACTGACACTTGGTATCTATCGTAATAAAGTAGATTTAAGAATGCTGAACATTAGTTTGTGCTGTTTTTAAGTGCGAAATCGCT # Right flank : CGGTTGAGCTCGGCGTTGCTCCATTCCTTTACTTAGTCGCTCCCATGCAGGAGATAGATTGAACTAATAGTCAAACGAAACCGATAGGATATACGATCCAAAAGCCCACACCATCTTAGTATGAGTGGGTTTTTGGACGTTTACTTTTTTTGTGCGAAAACTGTAAAAAAATGTTCGATTGTTCTCCGGAAAATGTCGGATTTTTCCTTATTATGCTGTTATAATTAGGGAAACGTATGTTCCTTAGGTGTGGTATTGTTCATCTGTTTGTTTGAGGAGGAGAAACATGGAATACATAGCTCACATCCGGGAAAGTGACATGAAAGTCCAGACCGTCACTGAGCATTTGTTAGAAGTGCGGACGCTAGCTGAGAAGTATGGTAAGAAGCTTGGGATCAAATATATTGCCGGGCTTGCAGGGATGCTTCATGATCTGGGCAAATATACAGAGGGGTTCAGAAATTACATAGTGCAAGCCGTCTACCATCCTGAGGCCCCGC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 123264-122898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRB01000142.1 Paenibacillus riograndensis strain CAS34 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 123263 33 93.9 34 ....................A...A........ CTGACATCCTCACAGTGATCTTTATGAATGTAAT 123196 33 97.0 34 ........................A........ CCCGCCTGACGATGGCCGAAACGGACTCCTGAAT 123129 33 100.0 33 ................................. ACAGAGGATCATTTAACCGGATAGCCTTCAACA 123063 33 100.0 33 ................................. ACAGAGGATCATTTAACCGGATAGCCTTCAACA 122997 33 90.9 34 .............C.....T....A........ ACAAATCACGAAAATAACTGTCAAAAACAGAATC 122930 33 87.9 0 ............A..........AA.......C | ========== ====== ====== ====== ================================= ================================== ================== 6 33 94.9 34 GTCGCTCCCTATGTGGGAGCGTGGCTTGAAATA # Left flank : CTTCGCCTAGAATGACCCGGAGCGTTTCAATGGAGATAGAAGAGACGATCTTGCGTTCCTCCACGGCTTGTTTCAATTTAGAAAGCGACCAATTCGTGAACGGATAACCGGCCACTTTGGGAGGAATTTGGGCAAGTTCAATGATCTCACTGCGTTCTTCTGGAGTGAAGGTGGGCGGACGTCCCCCGCAGTATTTCGGTTTAAGGGAAGGCAACCCTTCCTGATTAAACCGATGAATCGTGTGTCTAATATGCTCGCCCGAGATATGATAAAGCCGACTGATTTCCGGTACTTTCATTTTTTGGGCAGAAGCCAGAATAAGCAGAGCTCGACGAACCTGAACGGGGTCGGCTCCTTTTCGTACAATTCGCTTGAGTCGGTTACCTTCTTCCTGAGTCAAGTCACGAACAAAAATAGTCATACCGTTCACCTCTAGAAGTTGGATTTACGTATCATTACCCGTTTTCCAAACTATGATGTCTGATGGGGCACTAGCTGTT # Right flank : TATGCTGAGCGAAGATAGTAATTCGCGCGACTTCGCCCCCTACGCGAAAACGTGGACCAAAATCCTAAATCCAGTTGAAACTTAAACTTCTTCCAAACCGCTAAAGCATAATGTTCGAACTTTCAAATAAGTTCAGGTACTGAAAAGCACCAAAAGTTTGCTGCATAAGCAGAACTTTTGGTGCTTTGTTGCATCCAGCAGACTTATTCCCGTGTGAATTTCCCCGAAGAAATGAATTTTATGTAGAATCATGGAAAATTAATCTGTAAAAAATTCCATATCAATGTATAATATTGCTATGAAATAATTCTTTTAGCTCATATCGGTGCTTCTTTCTATGTTAAAAGTACTAGTCTTGTAATTAGTCAGAAATGAGGTGAAGTTCAATGTTCATGGATCCTAAAAAGAAAATAAAACCTCCTGCGCTGGATTTGGTAATAAAGGACATACAAGAATCCAGAAAAAAGGTGCCGGAAGACAGATTCAATATTACTATAGTT # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATGTGGGAGCGTGGCTTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 5 125337-124440 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRB01000142.1 Paenibacillus riograndensis strain CAS34 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 125336 32 100.0 33 ................................ CTTTCGGAGTATCGCGAACATGCGATATGCCTA 125271 32 100.0 34 ................................ ATGACCCAGAGTTTCCATGCGGCATCCTCCGATT 125205 32 100.0 35 ................................ CATAGAGGATATGAACGAACGTAAAGCAGAGGTTG 125138 32 100.0 34 ................................ CGATATCCCGCTGAAGGGTATACGGCCAGTCCGC 125072 32 100.0 35 ................................ CTTATCCCTCCCGCGTATGCCCGCCGGCTAAATTA 125005 32 100.0 33 ................................ TTCCGGCGAGAGTCGGGAACGTTTGACCTCTCC 124940 32 100.0 36 ................................ CACGCTTTTTTCGACGCGTTAACGTAGAGAATGACG 124872 32 100.0 36 ................................ AGACGCGGAGAGTTGATCGCTTTGGATGAAGACGAC 124804 32 96.9 35 ................A............... TCGAATAAAATCAGGGGGCGGGCTGGGGACGAACT 124737 32 96.9 34 ................A............... CTCCACGACCAAAGGTTGTGTGCTATCTGGTACA 124671 32 96.9 34 ................A............... TCCGGCGAAGCTCAAGCCAGCGCCATACGTGATC 124605 32 96.9 34 ................A............... CAGCAAAGTCATTATTCATGTTTGCCAACCAATA 124539 32 96.9 36 ................A............... ACGGATAGGAACGACGGAGCCGGTAGTGGATTGGAT 124471 32 93.8 0 ......C............T............ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 98.5 35 GTCGCTTCCTATGTGGGAGCGTGGATTGAAAT # Left flank : GACTCTAGTCATCGGTACGCACGGTGATATTATGACCCTATTGATGAATTATTTTGATTGTCAGTATGGTTATGATTTCTGGCAATCTACGACAATGCCTGATATCTACCGCTTAGAATTTAAAAGTAGAATGCTTGCCCAAGTAAGGCGGGAGTGGGAGATCTGAATGTCAGTCAAACGAGCTGATTATCGAGTGTTCAGCAAAAAAGTGAACTGTACCCTTAAGTAAACGTTGTTCGTGAAAAGATACTACTTGCTCGATGCGATATGACGTACAATAGAGGAGATACCAGCATTTGAAGCATGGACAATAAAGTTATGTAATGTCTGGTGCGAATGTATAGTGCCCATGAAATCCCCGGGTCTTTCGCACCTGGATTATTACATTATTTGTATATAAAAGTTGGAATAAACATCACTGACGCTTTGCATCCAACGTAATAAAGTGGATTTTAGAATGCCGAAAATTGGTTTATGTTGTTTTTAAGTGCGAAATCGCT # Right flank : GCGTTTTTGGAGCTTTTCAAAAGCTCTAGTGCCCCATCAGACAACCTTGATCTTATTTTGCTCGCGTAGAATAATGGCTTTACGTTTATTCTTGTTTCGCCAACGAAGATACGCTTGAATGGCCAACCCTAAATCTTGATGTTTGGCAAAATCACTACCTTCGAGGACGAATTTTCGTAGGGGCCCAAAGTGGCATTCGATTCGGTTAAGCCACGATGCATAGGTTGGAGTATAGACGAATTCTACATTGTTCGCTGCGGCCCATTCTTTCACTTTGTGGTGTACATGCGGAGAAAAATTGTCCAGTATGATATACAAGCGTTCCGACCGATGAAACCGGCGCCGAAGCACATGGAGGAAACGAATAATATCCTGATGCTTCTTCGTTTTTGAAGCATGGCCGTAGAGTTGGTCTGTTTTCAAATCCAATGCCGCAAGCAGATGCTTGACTCCATGCGGACGGTTGTAGGTCGCCCGCAGCCGGACGGGTCTGCGTTGTT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTTCCTATGTGGGAGCGTGGATTGAAAT # Alternate repeat : GTCGCTTCCTATGTGGAAGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : NA // Array 6 129192-127770 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIRB01000142.1 Paenibacillus riograndensis strain CAS34 contig_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 129191 32 100.0 33 ................................ GATGCTGATCGCATGGATTTGGGTCTGATTAAG 129126 32 100.0 33 ................................ AACTATCGACCTGGACAATTATTACTATGCGCA 129061 32 100.0 34 ................................ AATTTTGATCTATTGTGTCTGACCTGATATACTT 128995 32 100.0 34 ................................ ATGAGCACATACTACACGTTGCCACTCTTCCGGC 128929 32 100.0 33 ................................ AGCATTATACTGGCTCAGTTTAGCACGGGCTTG 128864 32 100.0 34 ................................ CTCCCGGATGTGCAGTTCAGTCAGCCATGTAGTG 128798 32 100.0 35 ................................ CGGCTATTCTTTTTTGGCGGTGGTTTGATGTTATT 128731 32 100.0 34 ................................ GGAAATAAAGGGGCAAATACACGTCCTATGAGTC 128665 32 100.0 35 ................................ CCATTCTGCTGTAATAGCGAGAAAATCTTATTCTC 128598 32 100.0 34 ................................ TTTGTTGCGGCCCCGCCCGTAATCAATTGTTACG 128532 32 96.9 34 .................G.............. GATCTCGCGTCACATTACGATCTTTGATAACTGC 128466 32 100.0 36 ................................ ATCCTGGTCTTATTGCCAGTTATAGTTACGAAGCTC 128398 32 100.0 37 ................................ GGCTTCGGCACAGGGTGAAGCCCGAAACTAACCACGG 128329 32 100.0 34 ................................ CCTTTACGAGAAAACCGATCCGCGACAGGTCCGA 128263 32 100.0 33 ................................ AAACCCGAATTGTTAAAGCTGAATGTTTTCGAT 128198 32 100.0 33 ................................ TTTATTGGTTTGTCTAACCATGATAATGTCACC 128133 32 100.0 34 ................................ CTTTGGGGAAGTTGTATTGAAATGAGCGCTGTAA 128067 32 96.9 36 .................G.............. TGGCACATATATATGAGACTGATCCTTGGACAGCTC 127999 32 100.0 33 ................................ AATGCAGCTCAAATGCTCAGATTTGTAGATGAG 127934 32 93.8 34 ............T.A................. CACGGTGATGTATTTGCCATCAATTAGCGCCAAT 127868 32 90.6 35 ......T........A..............T. CTTAGCGTCGGCTCACGAGTTGTATGCATCCTTGA 127801 32 68.8 0 T.......C..CT.A.A..T..A.G.....T. | ========== ====== ====== ====== ================================ ===================================== ================== 22 32 97.6 34 GTCGCTCCTTATGTGGGAGCGTGGATTGAAAT # Left flank : GATTACCCCGTGAGCTTAAGCTCCTACACGAAGGGGCGCAGCACGTTCACTTCCTTTTTTGCCGGCTACGAGGAATGCCCTCCGGATGTCCGGGCCGAGCGCACCCGCCGGGGCGTGAACCCGCTCGATCAGGCGAGGTATATCCTGAGCGTGCGGAAGGCGCTGCAGGGGTAGGCAGAGTGGAAAGAGAATTAGTAGGAAGAGATATTGTTTGCATGTGGCAGGATGGCATTGAATGAACTGTGTACCAGCATGAGGGTGTTGAGAGGAACTTTTTTAAGATAGATTCGGTAAAAAGCAGATAGATTGGATGATGGGATTAAATCCGTGGTGCGAATGTAAGGCACTCATGAAATTCCCGGGTCCTTCGCACCTGGATTATTACATTATTTGTATATAAAAGTTGGAATAAACATCACTGACGCTTTGTATCTAGCGTAATAAAGTGGATTTAAGAATGTTAAAAATGGGTTTGTGCTGTTTTTAAGTGAGAAATCGCT # Right flank : ACTTGGCTGACTTTAATGGGGTCTCCTGCTAACGTCGCTCCTTGTGCATTCCATTTTTGTGAAGGTCATGCCGCTATTGCTTGGCTTGCTAGGTGAGTTGAAAGCTACTTCCCTCATAAAAAACACAAGGTTTTAAGTAATTGTCGCTCAGTTTCTTGTTATTTTTGCCGGGAAAGTCGGTTTTGATCTTGGTTATGATGGGTTTTTGGCGCTACCACCGAGAAAAGGTCGCTGCCTATACAGGAGTATCTTACATTTATACAAGGTTCGATTTCATCATTGGAATATAAGGTTCTTGCTAGGAAAGCTAACAGTAAAAAAAGCACTGAAATTCCGCTTAACAGCCGAAATTCAGTGCCTTTTTGCTATCTCAGATTATTCCTTCCGTCGTACTTCGAACAAATCGTTAGGACTGACCTCGAAATAGAGACATAACTTCATAATCAGTTCCGCTGAAATTTTCTTCTTTTCCATATTCGTATTATGCATTAATTCCATAA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTATGTGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACTCCTTATGTGGGAGTGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [16-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //