Array 1 153047-152629 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVY01000033.1 Corynebacterium diphtheriae bv. gravis strain 1270 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 153046 35 77.8 27 .GACAC.C..-...................A..... TCCTACGGCTCATCTCCGCTGGCGCGG 152984 36 97.2 28 G................................... CAGCAGCACCTAGCGAGGCTCGCGCCGA 152920 36 100.0 28 .................................... GCAAAAAATTTAGCAACTGTTAGACGAT 152856 36 100.0 28 .................................... TTCTATGGTACGTGGAAGCCGCTCGCGC 152792 36 100.0 28 .................................... GTGGACGCCGACACCACCAAAGCCCGCA 152728 36 100.0 28 .................................... CAGCACTCGCTCAAGGCTCAGGCAGCGT 152664 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 96.4 28 ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Left flank : AGGCGCTCTTGTTGACTACGTGGCCACCATCACGGACTTTGATACGCAGCGCGTCGAGGAAGATCACGGGGTAGAACTCGTCTAACTGGCGGTTTTGCCACACCATTACTTCATCAAGTACTGCATCTGTTACTGCAGAGATGGTATCACAAGAGATGTCCACCCCCGTCGTGTCCGCCACTGGTCAGTTTCTCATGTCCGCTAACAATCCCACCGGCATACAAACTCACGATCAAGCCATCGACATCCGTTAAACGCCTCGAACCTTTCGGGACCATGGTGGGAATATACGTCCCAGCTCTATCCCGGGTACCGTTGCGATAATTGTCGATCCCAGCAGCAGCTTTAGCTTCCCGATCACCGGATTGATAGCCAAGGTTAGCAAGCAGCTTTTCCTCAGGTCGTGCCAATCTTGGCCTTATCGGCTGGGTCTCGTCTTGCCACAGTAGCCATTCTGACTTATCTCCTTATGCGGAATGGAATCCCACACACAAACCATC # Right flank : AGGTAGCCCAAAAAATCCTGTTTAACATGGTTTTTTGGGCTACCTGAAGTCTAAAAAATCGCGAGTTGATCAGGCTTTTCTTCGCCAGAAACCTCTGCAGAAGAAGAAAAACGGATCATCTTCGACCATTGGATGTCCGATACCGAAAGGATTCGAACATCCCCACCTGGGGGTAATTTTTCTTTAATTAATTTCACCAAATTAGATAACTTTGCGGCCAGAGGCAGGTACTGCACATATACACTCAGCTGTGCCATACAGAATCCAAGATCTAAAAGATTCTGACGAAACGCCGTTGCTTGCTTTCGCTGAGTCTTTGTCTTCACCGGAAGATCAAACATCACCACACACCACACCGGATCGCTACCTTTCTTCGGCATCGAAGGGACCTTCCCAAATAGGCGGTACTAATTTCTCAACATCACCTTCCACATACCGCCCATACTGTTGAGCGAACGCGGTAAAAACCGTCGGAATTGACTGCCCCGCAGAATTGAAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GCTGGGGTTCAGTTCTCAAAAACCCTGATAGACTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], // Array 1 115867-117666 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSVY01000023.1 Corynebacterium diphtheriae bv. gravis strain 1270 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 115867 29 100.0 32 ............................. ACGTCGGTGAGTAAAACTCCGAAAGTTACCGG 115928 29 100.0 32 ............................. CCAAGGAAATGTTTCTTAAACTCCCCACCATC 115989 29 100.0 32 ............................. AGGTGGTTACCGTGGCGAACCAGTGCGCTGGG 116050 29 100.0 32 ............................. CCGCGGCCGATGTGACCGCAGCACGGGGCGAC 116111 29 100.0 33 ............................. AGTTTCATATCCCTGAAATAAACTGTTCCAGTG 116173 29 100.0 33 ............................. ATCGAAGTACCGGTCTGCCATGAGGTCGTTATA 116235 29 100.0 32 ............................. TTCCGTTGCTCCAGGGGCAAGATTCTTAGTCT 116296 29 100.0 32 ............................. GCCCGCAGGTCAGACCACCGTAGTGTCCGGCC 116357 29 100.0 32 ............................. ATTGGTGGATAATAGGCTAGGTGATTCTTGGT 116418 29 100.0 32 ............................. GACGAAAAAGGAGGCGATCGCCGGTTCTATCG 116479 29 100.0 32 ............................. CTACGGCTCCACAGGGCCAAAAGTTCGAGAAA 116540 29 100.0 32 ............................. AGGCAAGCCGCTGGAGGAGCTTACTCGCCAAT 116601 29 100.0 32 ............................. GCCATCATGGTGGCAAACGAGACGATCGAAGA 116662 29 100.0 32 ............................. AACGAATAGCCCCTGTAAATGCTACATATGCT 116723 29 100.0 32 ............................. GAAAGCTGTTCACCTGATCCGGCTCCAAACCT 116784 29 100.0 32 ............................. CTGTTTTGGTTGTGCAGTCCCCGAACATATCT 116845 29 100.0 32 ............................. GATGACCGCGGCCTTGTGCAGGTCAAGATTAG 116906 29 100.0 32 ............................. ATGGAAAGAAATCGCTGAACGCCGACTCCGCC 116967 29 100.0 32 ............................. ATACTTAGGATGTCCCAAAGCTAAGGTAGCGG 117028 29 96.6 32 ............................G CACGTAGGCTTGTCGGGCCGCATATGAATGGT 117089 29 100.0 32 ............................. GTCTTCGAGGATTCGACGGGTTTCCATTGTGC 117150 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 117211 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 117272 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 117333 29 100.0 32 ............................. AATCTTGTGAGGGTCCTCGGATGACCGCGCAG 117394 29 100.0 32 ............................. TTAAAGCACCATCCACGGGTGTTATTTGCTGA 117455 29 100.0 32 ............................. AGCTCAGATTGCGGGGATTCTCCCCACATTTT 117516 29 96.6 32 ............................T AAAGCGAGGTCGCTGCGCGTGACGCTGCCGAA 117577 29 100.0 32 ............................. GCGAGCGACCGGCATGCCATCAGACCCGACCC 117638 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTCTTCTCCGCACACGCGGAGGTATTTCC # Left flank : GTCGGCATCTCCGCCGTGAGATCCATTCAAGAAAAATAATGGCAGGTATGCTCGAAGCACTAATGGAGGTGCTGACACCGTATCTTCCAAATCGTAATGACGATCGGCTAATCGGCGACAGTGACGAAGTCAAAGGGCACATACAGTATGGCAAGGAGATTAACTAGATGTTCGCTGTACTTTACCTTCAGGCAGCACCTGATCATCTCCTTGGTTACGTCACCCGTTTCCTTACTGAAGCGGATACAAGCATCTATGTTGGAAATGTTTCCAAAAACGTAGCTTCAAACTTATGGATTCGTGTAACAGAAGCTATTAAAGATGCTCATGCCACAATGATTGTGAGCGATAATTCTCGTGAGCAAGGTTTCTCAATAATGACGACAGGTGATAGCACACTACAAGTTCTTGATGCAGATGGGTTATCCGTCCTGGCTTCACGCCCTGGACGAGCCGCTGTAAAATTACATGGCCTACAGTAAAACTGCAGTACAGTTAGT # Right flank : CGGCAGGCAATCCAAATATTCGTGTGATGCGTGTGTCTGATGGCTCGCTCATGGACTCCGAGTCTCAGAAGATTCTCTCCGATATTGCGACAGAAACAGGATTCCAGGTGTGGGTTGAGCTGGTTGATGAAACCGGTGAACATGGCATTGTGATTGAAGATGGGCAAGTGCGGGAACTTATAGAAGAAGCAGTGTAAGTGCTGCGTGGTGGGGCGCGCATACCTTCAACGCGCACTAGATCAAAGGACAAAGAAAATGGCACAAGGCGAAGTCAACGTCACCATTGTTGGTAATCTCGTTGCAGACCCAGAACTTCGCTTCACCCCTAATGGTGTAGCAGTAACCAGCTTCCGTGTTGCTTCTACCTCCAAGAAGTACGACTCCCGGTCGAACCAGTGGGTAGATGGTGACGCGGTTTTCTTGCAGTGCAACATTTGGCACCAAGCTGCCGAAAACGTTGCAGAATCCCTCACCAAGGGCATGCGCGTGATCGTCACCGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCTCCGCACACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //