Array 1 1450582-1450309 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002280.1 Streptomyces niveus NCIMB 11891 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1450581 28 100.0 33 ............................ GGAGATCAAGATGAAGTTGTTCGGTCGTGAGCC 1450520 28 100.0 33 ............................ GGCGTTGCAGGTGTTCGACGAGCTGGCCGGCGC 1450459 28 100.0 33 ............................ ACGTGCTACCTAATTCGCCTTCCCAAGCTGTAC 1450398 28 92.9 34 ...........A....G........... GTTGATGTTGTCGGCCCGCCGGCCCCGAATAGGC 1450336 28 92.9 0 ...........A...............G | ========== ====== ====== ====== ============================ ================================== ================== 5 28 97.2 34 GTCCGGTCCGTGCGCGTGGGGAGCGACC # Left flank : CGAAGGTCCGGCAGAAGTCCGGACTCAACCGCTCCATCCTCGACGCGTCGCCCGCGGAAATGCGGCGTCAGCTGGACTACAAGACCCGCTGGAATGGATCACAACTCGCCGTGTGCGACCGGTGGTTCCCCTCCAGCAGAACGTGCTCGGCCTGCGGGTGGCAAAAACCACGCCTGACCCTGGCCGAGCGCGTGTTCAACTGCGGACAGTGCGGTCTGGTGATCGACCGGGATCTCAACGCCGCCCGGAACATCGCCGCCCACGCTGTCCTCGTGCCGCACGGCACCGCCGCCCCCGGTAGCGGGGAGGCGTCAAACGCCCGTGGAGCAGCCACAAGACCCGCCACCCCTCGGGGCGGAAGGCAGGCCGCGCTGAAGCGGGAAGACACTGGTCCACCGCGGCCGGTGCCACCTCAGCGGAGCGATCCGCTGACGCTCTTTACCCTCGACGTACCGGACCAGCAAACGGCAAAGCGGCCCTGAAACCGCAGGTGGCGAAGT # Right flank : AGTTGCTGTTGTGCCTGCCCGCATGCCGTCTTGGTCTAGGCGATCTCCCAGCGGTTGCTGTCGTGGGTCTGTTCGTGTGTGTTGCGGGCGGTTTCCAGGAGGCGCTGCCAGGAGGTGACGTTTGGCCGTCGTCGGAGCAGCGCGCGGCGTTCCCGTTCAGTCATGCCGCCCCAGATGCCGAATTCTTCGCGGTTGTCGAGCGCGTAGGCCAGGCATTCGGTACGCACCTTGCAGCCGAGGCAGACGGACTTGGCCCGGTTCTGCTCCTGGCCCTGGACGAACAGGGTGTCGGGGGCGACAGTGCGGCAGGCCCCTCGTTCGCTCCATCTCGACGGCGCGTTCACTGCGTTTCCTTCCCATGGGGGAGAGTGACGCTACAAAACATTCCATCGTTGAAACAGACCGCGGTGCGGGAGTCACTCGTTCGGGTGCCGATCGCAGGAGTGCGCCGAGTCGAGCCTCAACAGCTCGCATTCTTCCGGCTCTTGAGCGCGCCGGCC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGGTCCGTGCGCGTGGGGAGCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1463062-1463577 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002280.1 Streptomyces niveus NCIMB 11891 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1463062 29 100.0 32 ............................. GGCCCGGCGACTCCGTCCCACGCGAGCGTTGC 1463123 29 100.0 32 ............................. GCGTTGGGCCGTAAGCCGCCGCGGCGGGGGCA 1463184 29 100.0 32 ............................. ATGCAGCGCGCCGCCGACGAGCTGCGGAACGC 1463245 29 100.0 32 ............................. GAGGCCCGGAAGTTCGTCGACACGTACCTCGA 1463306 29 96.6 32 ............................T TCGGCTTCACCGGGGTCGACTCCATCGGCCGG 1463367 29 100.0 32 ............................. GCCCTGATCCGGCAGCGTGACCCCAGGATCAA 1463428 29 100.0 32 ............................. TGGCTGGGTCACAAGGATCCGTCGATCACGTT 1463489 29 100.0 32 ............................. TCGGCGGAGAGGGCTTCCCGCACCCGTTGCCC 1463550 28 96.6 0 .................-........... | ========== ====== ====== ====== ============================= ================================ ================== 9 29 99.2 32 GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Left flank : TCCGACGGTCATATGACCGTCGGACAGGGCCCTGGCCGAACTCCCAGCGACCGCTGGGGCATCCAGCACTCTGAGCGGTGGGGACCGGTTTGGAGATGCCGAGGAGACCTGCTACACACCACCGTCGGGCGGCGACGAAGAGGGCAACCGCGTTGCCAACCCTCCGGTCCCGATGACCGACGTACGCGTGCCGTCGACTCGTGGCCTTTGGGGTACCGCGGACAACATGAGATACAAGGGCCACGAGCCACCTTGCTCCCGTCACATCGCATATAACGACCACCGCATGTGTTTCCCGAGGGCAGCGCGACGATCCCGAACAGCGACAGGTCACTGCGTCACGATCCGCTGGGGCACCTGAAACGGTTCCGGGTCGGCGGGGAGAGCATCGGCGGACTCAGCGACAACCTGCCGCGTTAGGCTGAGCAGATGCCAAACTACGATGCCAACACTCAGGCAAAGGGATTGCAAAGCCCTCGCTAAGCCGCAGGTCAAGAAGT # Right flank : GCCTTAGCAACGGCGTTCCAGACGCCTCGAATTGTCTTCCCCGCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCCGCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1465141-1464624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002280.1 Streptomyces niveus NCIMB 11891 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1465140 29 100.0 32 ............................. ATGCAGCGCGCCGCCGACGAGCTGCGGAACGC 1465079 29 100.0 32 ............................. ACGAACACGAGCCGGTCGGCTGCGCGGACGCC 1465018 29 100.0 32 ............................. GCGAACGACATCGACCCGAGCCTCGTATCGGA 1464957 29 100.0 32 ............................. TCGGCATGGGAGAAGCGGAAGCTGGACCAGGC 1464896 29 100.0 32 ............................. ACAGCCGAGGCGGCCGTCGCGCTGCACAAGAC 1464835 29 100.0 32 ............................. GTCCTCATCGCCTTCTTCATTCACGACCTGTC 1464774 29 100.0 32 ............................. AAGGCAGCCCCGGCGATATCGGCGCCGTACGC 1464713 29 100.0 32 ............................. CACGAGACCCCCCGAGACGCCGACGGCGCCAA 1464652 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGCCCGCGCGGGGGTGTTCCGACGGGACCGGCTTCCCCGACAGCATGCAGTGC # Right flank : GATGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCCCGCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1466197-1467571 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002280.1 Streptomyces niveus NCIMB 11891 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 1466197 29 100.0 32 ............................. TCCGCTAAGAGTCCACAACCCCACACCGTGCC 1466258 29 100.0 32 ............................. ATCGGCGCCGATCGGCCCGCACACGCTGCCGC 1466319 29 100.0 32 ............................. CCGGGGCCTGCCGGTCCGCGATCCACGCCCCG 1466380 29 100.0 32 ............................. TGCGCGGACCGATGGCCGCGTCGTCGATCGTC 1466441 29 100.0 32 ............................. CCGGGGTCAGCCAGGAAGCGCTCGCCCACCGC 1466502 29 100.0 32 ............................. GCGACCAGCACCAGGAGCAGCGCGGCGAGTGC 1466563 29 100.0 32 ............................. TACGGCCGACCGGTACCCCCCGCCGACCCCGA 1466624 29 100.0 32 ............................. CGGGTACGGGCTCGTTCCACGACTTCGGCACC 1466685 29 100.0 32 ............................. CGCAGGGATGCAATGGGATGTGTGGAGACGAT 1466746 29 100.0 32 ............................. CGGTTCCTCGAACCGCGCAGCACAACCATCGA 1466807 29 100.0 32 ............................. TCGGTCGCGTTGAGCTTTCGTCCCGGCAGTCG 1466868 29 100.0 32 ............................. TGCTCCTCTCCGATCTGGACACCTACAAGAAG 1466929 29 100.0 32 ............................. GTTCGCCGCGATCCAGGCTTCGGCGCAGGTCT 1466990 29 100.0 33 ............................. CCGACGCCGATGTCGAGGAACTGGTCGACCCCC 1467052 29 100.0 32 ............................. CCGACGCCGATGTCGAGGAACTGGTCGACCCC 1467113 29 100.0 32 ............................. AAGAAGGCCGACGACGCGGTGAGCGCGGCGAA 1467174 29 100.0 35 ............................. TCCCTGCCTCCCTGCGGTGCCGCAGGTCAGGCGTC 1467238 29 96.6 32 T............................ ACCAGTTCACCCCTGGACGAGCCGCGACCGTG 1467299 29 100.0 32 ............................. ACCCGACTCTCGGCGAGGTGATGCGCCGCCTC 1467360 29 100.0 32 ............................. CCGAGGAACGAGCGGCGCTTGGACTTCTGTTC 1467421 29 100.0 32 ............................. ACCTGCATGGCCTGCACCCAGGCGTCGCAGCC 1467482 29 100.0 32 ............................. CCGGGCTACCGGGGCGCGCCAGCCAGCATCGC 1467543 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =================================== ================== 23 29 99.9 32 GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCGCAC # Right flank : GTACACGGCGCGTGGGACGCCAGCCCGGACGAGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCCGCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 5 1468444-1468777 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002280.1 Streptomyces niveus NCIMB 11891 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1468444 29 100.0 32 ............................. GAGACGATGGAGTCCTGGAGCAGCTCGTTCGG 1468505 29 100.0 32 ............................. TGCTTCTCCTGCTTCATCTTGTCGGCGAGCGC 1468566 29 100.0 32 ............................. CACTCGTGCCCGAATGAGGGTTGCGGCCACCG 1468627 29 100.0 32 ............................. TCCTGCGGTACCTCCATCGGACCGGCGCACCA 1468688 29 100.0 32 ............................. ACCAACTGCGACGCCGCGCACCTCGAGTCCTG 1468749 29 69.0 0 ...C......A...........GCCCGTC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCGCGCGGGGGTGTTCCGCCCCTCGTACAGACGTGGCTGCCAGACTTCAC # Right flank : CTGGTCGTTGGACTCTGGCATGAGCGTGCTGGGTCCTCCCCGGCTCAGGCCCCACGGGTCGCTGCCCCGGTTCGTCCTCCCCCAGACCCGCAGGTCCCTAGAGCGACTCCTCCCCCGCCCCCGTGCCGCTTTCAGATCCACGGCGTTCCAGCTCGCTGCCGACGCCTCGACCTTGCGCGGTCATCCTGATCAAGGTCAGCCCGTCAAAGTCGACAGGGTGGCGTCTGCGTGTACCGGCCGTACGCAGTGCGAAGCCTTGTTCGTTTGCTGCGGGGTGTACGAGAAGTGCGGCGCCGTCGCCGACAACTTCCGTGACCACGTTCCAGAGTTGGTCACGTACTCGGGCGGACAGAGTGCCGACGAAGATACCCGGGGTGACTTCAACGGTCCAGCGGCTCAGCGCACCTCGGAGGCTGTCGGGGACGGCTGTGGTGGCGATGACGGCCATGGCGGGCATGATCAGGCGTCTTCCGGTGAGTAGTTGACGCCTGCGGGCAAGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCCCGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCCGCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1478357-1479362 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002280.1 Streptomyces niveus NCIMB 11891 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1478357 29 100.0 32 ............................. ACCTCCGCGACCTCGCCGCAGCAGCCGCAGCC 1478418 29 100.0 32 ............................. TCGATCACCCTCGACGCGGCCACCCACAAGGC 1478479 29 100.0 32 ............................. TTGAGGGCGATCACGGCAAGCGCCCACAGCTT 1478540 29 100.0 32 ............................. TACTGGCTCTCGCGGGCCATAGCCCGGTAGGT 1478601 29 96.6 32 ............................C GAACAGGGTCGGGAACATGAGGCTCTCCTAGA 1478662 29 100.0 32 ............................. CGCGGGGACGGCGAACGCGACCGCGTGCGCGC 1478723 29 100.0 32 ............................. CCGCCGCGAAGGGCGAGGACAAGCCGATCAAG 1478784 29 100.0 32 ............................. GACACCGACATGGACAAGCAGCAGGCCGTACG 1478845 29 100.0 32 ............................. GCGGGGCCGGCGGGGGTGACGATCGCTGCGCA 1478906 29 100.0 32 ............................. ACCAAGGCCCCCGAGCCGGCCGAGGAGACCTC 1478967 29 100.0 32 ............................. GCGGTCGCCTTGTCCCACATCTTGCCGGGGTC 1479028 29 100.0 33 ............................. TCCGGCACCGGCATCACCGGGTTCGACTGCTCA 1479090 29 100.0 32 ............................. CTGGGCAAGCGCAAGGTCACCGAGGAGCTGGC 1479151 29 100.0 32 ............................. GCCGAAGGTCGTCAACTGGCCGATGTGTCCTG 1479212 29 100.0 32 ............................. GCCACGCCGCATGACCGCCATCCGCACCAACC 1479273 29 100.0 32 ............................. TGCCGGTCTGCCGGAGGCGTGCGGGGAGCGGG 1479334 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GTCCTCCCCGCCCGCGCGGGGGTGTTCCG # Left flank : TCCCGTAGCACTTGGCTCAGCTTCTCGTACGCCTCGGCTACACACTGCTGGAATCCCGGCGTCAGCTTCCCAAGATCATGGAGACCTGCCCAGAACGCCGCCAGTACCCGGGCCTCTCTCTCCTCGACTCCCAATCCACCAGCGATCGCGGCCCGCTGATTTGGCGCCAGAAATCGGTCCCACAGGTCCAGCGCCACGGCGGCGGTGTCGAGCAGGTGAAAGAGCAACGGGTACGCCTTTGCGGCCTTCTCCGCTCCCACCTTGCCCCACGGACTCAAGTCCCGCTCATTCAAATTTTGTTCGGCCACGCCGCTCCGTCTCCTCACCGATGCGAGGGGAGACATACAAGCAGCCAGCACTGACAATCGCCCTGACCAGCACCGATCCATGCCACACAGCTCGGCCGCCACCGCGCGTTACCCTTACCGGATGACAAGCCGCGACGCACGGATGAAAGTAAAGCGATTGCTAAGCCCTCGCTAAGCCGCAGGTCACGAAGT # Right flank : GCCCGCCAGCGCCCCCAAGAGGCGGCGCACCTAGTCCTCCCCGGGGGTTGAGGAACACCGGAACGAAAACCGGCGCTAAGCCCCTGGAGGGCTTGGAAGCGCTTTGACCTGGGGTTCAGCGGGGGCGGAGCCTTCGGCAGTCGTGTTGATCACTGACTGTCTGGAGGTCCGGGGTGCCGGTCGAGTTTCTAACGGATGAGCAAGCCGCGAAGTACGCGGCGTATGACGGGGCGCCGTCCCGTACGGAGTTGGAGCGGTTCTTCTTCCTGGACGACGCGGACCGGGCGCTGATCGAGCCGAAGCGGCGGGCCCACAACCGGCTCGGGTTCGCGGTGCAGATGACCACGGTTCGGTTCCTCGGGGTGTTCCTGGACGATCCGACCGACGTGCCGCCGGAGGTGGTCGACTACCTCGCCGAGCAGCTCAGTATCGGGGACGCGTCGGCGTTGAAGGCGTACGGCGAGCGGGAGAACACCCGGCTTGACCACGTCCGTGAGCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCCGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCCGCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 7 1485183-1485394 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM002280.1 Streptomyces niveus NCIMB 11891 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1485183 29 93.1 32 CC........................... ATCCGCCGCGAGGACGCCATGTGGCTCCGGGA 1485244 29 100.0 32 ............................. CCACCCGCCAGGAGCGCGACCGGGTGTCGGCG 1485305 29 100.0 32 ............................. CAATCCCCGACTTGTAGTCGGGGTTGATGGGT 1485366 29 93.1 0 ..TT......................... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.6 32 GTCCTCCCCGCCCGCGCGGGGGTGTTCCG # Left flank : CCGACGGGCCGTCGTACCCGCGCTCGCCGCACCAGCCAAGCCAGGACAGGACGGAGGCGCGGCGGGCGTTCCAGGTGTTGACCGCGGCCTCGCCCCACAGCAGTTCGAGGACCTCGCCGATCTCGTCGTCCGCGACGGACGCCAGCGACCGGCCCTCGCCGATCCGCTCGACGGTCTTGCCCACCCCGATCCCGTAGTTGCGGACCGTGTTCGGGTTGCCGAGCGAGTCAAGGAACGCGTCGGCCGCTGCGCGGACGGTGAGCGCCTTCCCGACGGGCAGCTGCACGACGGCGGGCACGGCATCTCCCTTGCCACAGATAACGGGGCCGCTTCACGCACGGCCCGGCGAACGTCACCGCAGGTCGCGATCAGCAATGCCACGGATAATAGGGCATTATCTGCGGGACGACTTCAGACCGGTCCGACTGCCGACGCTCCGTCAGCCGCCCACCAGGGCCGGCAGATCCTTAGCGCCGGTTTTCGTTCCGATGTTCCTCAAC # Right flank : GGGTTCTCTTGCGTTCGAGCGGTTCCGCGACATCTGACCAGCAGGACTCAATGGGTCTGCGCCCAGCGTCACCTGCCTGCGGCACCCCATCGATATACGCCCCCCACAGGGCTTGACCTGCCCAACGGATGGCCTGACATACCATCTGAACGAGCGTCATTCGGCGTCAAGATATCGCCCGTAACGCCCACACCGCACATAATGCGCACGCATAAAACCGCAGGTCAGGCACCCTTGCCCACCGGCTCCAGGATCGTCACGCACTCCACGTGGTGCGTCATCGGAAAGATGTCGGCTTCCGACGGAGGGTTGTAACTTGCCTCCTGCTCAAGCACAGCCAGGCTCACGCCTGGAGCTCATTCGCTCGACAGGCTCGAGCCCGCCCTCGCGGGCAGTCGCTCAACGTACCCTTGGCAGCGCTTCGAGTGGCATGACGTCCCGTGCCACCATGCCCCGCCACAACGGCACCTCCTGGGGAGAATCTGGGGAGTATCGACGGC # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCCGCGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCGCCCGCGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //